Wall clock time and date at job start Mon Mar 30 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47392 * 2 1 4 4 C 1.50703 * 109.47046 * 240.00085 * 2 1 3 5 5 H 1.07997 * 120.00206 * 239.99645 * 4 2 1 6 6 C 1.37882 * 120.00021 * 60.00263 * 4 2 1 7 7 N 1.31516 * 119.99855 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47156 * 90.00187 * 8 6 4 10 10 H 1.48503 * 109.46901 * 209.99980 * 8 6 4 11 11 H 1.48499 * 109.47033 * 329.99978 * 8 6 4 12 12 C 1.50696 * 109.46957 * 120.00394 * 2 1 3 13 13 O 1.21289 * 120.00137 * 102.17560 * 12 2 1 14 14 N 1.34773 * 120.00342 * 282.17136 * 12 2 1 15 15 C 1.46506 * 119.99511 * 6.44285 * 14 12 2 16 16 C 1.39949 * 120.00578 * 186.44378 * 14 12 2 17 17 C 1.39275 * 120.49001 * 187.41422 * 16 14 12 18 18 C 1.38512 * 118.36151 * 179.76114 * 17 16 14 19 19 C 1.38268 * 119.23171 * 0.53760 * 18 17 16 20 20 N 1.31858 * 120.92133 * 359.70419 * 19 18 17 21 21 C 1.31818 * 121.79531 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.47229 * 305.13812 * 1 2 3 23 23 H 1.08999 * 109.46850 * 65.14259 * 1 2 3 24 24 H 1.08998 * 109.46827 * 185.13916 * 1 2 3 25 25 H 0.96993 * 120.00464 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47291 * 265.77234 * 15 14 12 27 27 H 1.08995 * 109.47394 * 25.77160 * 15 14 12 28 28 H 1.08999 * 109.46976 * 145.77952 * 15 14 12 29 29 H 1.08002 * 120.82340 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.38252 * 180.26538 * 18 17 16 31 31 H 1.07999 * 119.54018 * 179.72912 * 19 18 17 32 32 H 1.07997 * 119.66390 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 8 2.4433 -1.8486 1.1482 14 7 2.0249 -0.0812 2.4222 15 6 1.4005 1.2379 2.5501 16 6 2.6138 -0.6878 3.5375 17 6 2.4793 -0.1218 4.8030 18 6 3.0760 -0.7618 5.8767 19 6 3.7892 -1.9259 5.6576 20 7 3.9020 -2.4335 4.4459 21 6 3.3456 -1.8594 3.3978 22 1 -0.3633 0.5915 0.8404 23 1 -0.3633 0.4320 -0.9325 24 1 -0.3633 -1.0235 0.0921 25 1 0.7082 1.1610 -3.4843 26 1 2.1577 2.0120 2.4257 27 1 0.6340 1.3529 1.7837 28 1 0.9452 1.3302 3.5361 29 1 1.9200 0.7912 4.9443 30 1 2.9888 -0.3539 6.8730 31 1 4.2601 -2.4266 6.4906 32 1 3.4604 -2.3048 2.4207 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597219481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:45 Heat of formation + Delta-G solvation = 17.789791 kcal Electronic energy + Delta-G solvation = -16335.284568 eV Core-core repulsion = 13682.769168 eV Total energy + Delta-G solvation = -2652.515399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63332 -38.72749 -35.49197 -34.07558 -31.88380 -31.16217 -29.49380 -26.88984 -25.32311 -23.92226 -23.10551 -21.63227 -19.18854 -17.18122 -17.09690 -16.30484 -15.94082 -15.19590 -15.00869 -14.38431 -13.97887 -13.39381 -13.26302 -13.16895 -13.00940 -12.51620 -12.24814 -11.89900 -11.29864 -11.10344 -10.82932 -10.63818 -10.50425 -10.29284 -10.07543 -9.41692 -9.25305 -9.13689 -8.69115 -8.40460 -7.69363 -6.14307 -4.18946 1.39433 1.46580 3.20509 3.28460 3.33238 3.35352 3.42996 4.15667 4.38371 4.86582 4.90813 5.00992 5.18969 5.19832 5.30384 5.48059 5.58928 5.62602 5.84457 6.09156 6.24251 6.36024 6.49338 6.52493 6.70366 6.78913 7.24114 7.29590 7.58614 7.71406 7.92557 8.14593 8.30104 8.81005 8.89505 9.47015 10.92920 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043197 B = 0.006635 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.041770 B = 4219.197347 C = 4722.037777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 H 0.055 0.945 4 C -0.505 4.505 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.513 6.513 14 N -0.563 5.563 15 C 0.062 3.938 16 C 0.119 3.881 17 C -0.134 4.134 18 C -0.150 4.150 19 C 0.048 3.952 20 N -0.463 5.463 21 C 0.055 3.945 22 H 0.020 0.980 23 H 0.100 0.900 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 2.746 12.689 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 H 0.072 0.928 4 C -0.544 4.544 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.316 3.684 13 O -0.388 6.388 14 N -0.286 5.286 15 C -0.081 4.081 16 C 0.020 3.980 17 C -0.163 4.163 18 C -0.170 4.170 19 C -0.110 4.110 20 N -0.172 5.172 21 C -0.105 4.105 22 H 0.039 0.961 23 H 0.119 0.881 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.684 1.520 12.262 12.375 hybrid contribution -0.295 0.642 -0.421 0.822 sum 0.389 2.162 11.841 12.043 Atomic orbital electron populations 1.21901 0.95964 0.99541 1.02254 1.18933 0.94443 0.96891 0.88314 0.92771 1.21081 1.31572 1.12885 0.88826 0.90803 1.24932 0.94940 0.94978 0.99176 1.69841 1.36747 1.22911 1.23843 0.86404 0.79532 0.79248 0.81799 1.20510 1.21207 1.19657 1.22527 0.75710 0.86392 0.83796 1.90244 1.45404 1.18670 1.84435 1.46023 1.54933 1.19645 1.08019 1.22223 0.99300 0.82812 1.03727 1.19367 0.95469 0.95290 0.87873 1.21252 1.02348 1.01650 0.91073 1.21852 0.99084 0.97023 0.99065 1.22644 0.98810 0.94380 0.95137 1.67870 1.18188 1.31882 0.99265 1.24660 0.93024 0.92551 1.00236 0.96144 0.88111 0.94738 0.92739 0.91889 0.87967 0.91294 0.84807 0.85141 0.83455 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.76 37.16 0.33 -2.73 16 2 C 0.04 0.83 1.81 -92.92 -0.17 0.67 16 3 H 0.05 1.30 7.55 -51.93 -0.39 0.90 16 4 C -0.51 -13.74 8.35 -34.44 -0.29 -14.03 16 5 H 0.07 2.11 6.90 -52.49 -0.36 1.75 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.89 -24.05 11.29 55.43 0.63 -23.43 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.52 11.60 6.77 -10.99 -0.07 11.53 16 13 O -0.51 -12.65 12.20 5.55 0.07 -12.59 16 14 N -0.56 -10.24 3.10 -120.70 -0.37 -10.61 16 15 C 0.06 0.85 9.51 59.85 0.57 1.42 16 16 C 0.12 2.09 6.50 -83.54 -0.54 1.54 16 17 C -0.13 -1.86 9.36 -39.10 -0.37 -2.23 16 18 C -0.15 -1.86 10.10 -39.47 -0.40 -2.26 16 19 C 0.05 0.68 11.18 -17.53 -0.20 0.48 16 20 N -0.46 -8.30 10.35 -13.09 -0.14 -8.44 16 21 C 0.05 1.07 10.15 -17.33 -0.18 0.89 16 22 H 0.02 0.37 5.67 -51.93 -0.29 0.07 16 23 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.48 4.22 -51.93 -0.22 1.27 16 28 H 0.07 0.74 6.22 -51.93 -0.32 0.42 16 29 H 0.13 1.46 6.23 -52.49 -0.33 1.13 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.20 4.44 4.76 -54.80 -0.26 4.18 16 LS Contribution 263.78 15.07 3.98 3.98 Total: -1.00 -29.97 263.78 -5.58 -35.56 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.31 Total: 2.55 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.41 Total: -3.18 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.12 Total: -42.48 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.97 -5.58 -35.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597219481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.348 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds