Wall clock time and date at job start Mon Mar 30 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47392 * 2 1 4 4 C 1.50703 * 109.47046 * 240.00085 * 2 1 3 5 5 H 1.07997 * 120.00206 * 239.99645 * 4 2 1 6 6 C 1.37882 * 120.00021 * 60.00263 * 4 2 1 7 7 N 1.31516 * 119.99855 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47156 * 90.00187 * 8 6 4 10 10 H 1.48503 * 109.46901 * 209.99980 * 8 6 4 11 11 H 1.48499 * 109.47033 * 329.99978 * 8 6 4 12 12 C 1.50696 * 109.46957 * 120.00394 * 2 1 3 13 13 O 1.21289 * 120.00137 * 102.17560 * 12 2 1 14 14 N 1.34773 * 120.00342 * 282.17136 * 12 2 1 15 15 C 1.46506 * 119.99511 * 6.44285 * 14 12 2 16 16 C 1.39949 * 120.00578 * 186.44378 * 14 12 2 17 17 C 1.39275 * 120.49001 * 187.41422 * 16 14 12 18 18 C 1.38512 * 118.36151 * 179.76114 * 17 16 14 19 19 C 1.38268 * 119.23171 * 0.53760 * 18 17 16 20 20 N 1.31858 * 120.92133 * 359.70419 * 19 18 17 21 21 C 1.31818 * 121.79531 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.47229 * 305.13812 * 1 2 3 23 23 H 1.08999 * 109.46850 * 65.14259 * 1 2 3 24 24 H 1.08998 * 109.46827 * 185.13916 * 1 2 3 25 25 H 0.96993 * 120.00464 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47291 * 265.77234 * 15 14 12 27 27 H 1.08995 * 109.47394 * 25.77160 * 15 14 12 28 28 H 1.08999 * 109.46976 * 145.77952 * 15 14 12 29 29 H 1.08002 * 120.82340 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.38252 * 180.26538 * 18 17 16 31 31 H 1.07999 * 119.54018 * 179.72912 * 19 18 17 32 32 H 1.07997 * 119.66390 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 8 2.4433 -1.8486 1.1482 14 7 2.0249 -0.0812 2.4222 15 6 1.4005 1.2379 2.5501 16 6 2.6138 -0.6878 3.5375 17 6 2.4793 -0.1218 4.8030 18 6 3.0760 -0.7618 5.8767 19 6 3.7892 -1.9259 5.6576 20 7 3.9020 -2.4335 4.4459 21 6 3.3456 -1.8594 3.3978 22 1 -0.3633 0.5915 0.8404 23 1 -0.3633 0.4320 -0.9325 24 1 -0.3633 -1.0235 0.0921 25 1 0.7082 1.1610 -3.4843 26 1 2.1577 2.0120 2.4257 27 1 0.6340 1.3529 1.7837 28 1 0.9452 1.3302 3.5361 29 1 1.9200 0.7912 4.9443 30 1 2.9888 -0.3539 6.8730 31 1 4.2601 -2.4266 6.4906 32 1 3.4604 -2.3048 2.4207 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597219481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:45 Heat of formation + Delta-G solvation = -1.956688 kcal Electronic energy + Delta-G solvation = -16336.140839 eV Core-core repulsion = 13682.769168 eV Total energy + Delta-G solvation = -2653.371671 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02180 -40.13945 -36.96129 -35.98469 -33.17389 -32.80236 -30.92301 -28.13762 -27.28824 -25.40605 -24.39362 -23.11057 -20.72643 -18.73331 -18.43699 -17.95315 -17.45614 -16.75718 -16.58117 -15.96508 -15.30734 -14.80305 -14.78131 -14.56657 -14.25762 -14.12025 -13.63048 -13.18963 -12.99686 -12.92293 -12.69294 -12.34402 -12.27633 -12.07374 -11.63326 -11.10748 -10.64645 -10.54447 -10.45420 -10.15625 -9.02072 -8.19106 -6.29910 0.16741 0.31906 1.39994 1.41488 1.51972 1.71957 1.86099 2.42860 2.93755 3.10917 3.69570 3.75923 3.92066 4.04534 4.15417 4.26371 4.47710 4.54601 4.62602 4.75060 4.86012 4.92001 5.06784 5.12141 5.17287 5.36914 5.44452 5.68628 5.88580 5.96998 6.11256 6.35784 6.75729 7.04481 7.23331 7.38737 8.86400 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043197 B = 0.006635 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.041770 B = 4219.197347 C = 4722.037777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.035 3.965 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.046 0.954 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.517 3.483 13 O -0.552 6.552 14 N -0.559 5.559 15 C 0.054 3.946 16 C 0.093 3.907 17 C -0.119 4.119 18 C -0.131 4.131 19 C 0.046 3.954 20 N -0.495 5.495 21 C 0.018 3.982 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.019 0.981 25 H 0.267 0.733 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 4.405 15.442 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.014 3.986 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.310 3.690 13 O -0.431 6.431 14 N -0.281 5.281 15 C -0.086 4.086 16 C -0.005 4.005 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.112 4.112 20 N -0.204 5.204 21 C -0.140 4.140 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.191 0.809 30 H 0.201 0.799 31 H 0.200 0.800 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.190 3.216 15.030 15.371 hybrid contribution -0.093 0.138 -1.076 1.089 sum 0.097 3.354 13.953 14.351 Atomic orbital electron populations 1.21731 0.94725 0.99177 1.02841 1.18810 0.95427 0.96167 0.88216 0.93158 1.21233 1.32123 1.12750 0.91067 0.93553 1.25517 0.95075 0.95660 1.01202 1.69903 1.36772 1.23255 1.24539 0.85617 0.78600 0.78583 0.79231 1.20114 1.19748 1.20495 1.22167 0.75821 0.86022 0.84984 1.90270 1.47111 1.20251 1.85419 1.45837 1.54610 1.20665 1.06995 1.22508 0.99473 0.80889 1.05762 1.19455 0.96456 0.95448 0.89093 1.21732 1.01375 1.02299 0.89291 1.22415 0.96318 0.95441 1.00895 1.23384 0.98267 0.95103 0.94442 1.67777 1.19140 1.33060 1.00445 1.24065 0.95871 0.94473 0.99595 0.92064 0.90275 0.96141 0.92363 0.90464 0.88885 0.87201 0.80932 0.79945 0.79974 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.76 71.98 0.63 -5.01 16 2 C 0.03 1.71 1.81 -12.28 -0.02 1.68 16 3 H 0.05 2.46 7.55 -2.39 -0.02 2.44 16 4 C -0.53 -30.32 8.35 25.60 0.21 -30.10 16 5 H 0.05 2.83 6.90 -2.91 -0.02 2.81 16 6 C 0.03 1.39 5.29 84.66 0.45 1.83 16 7 N -0.91 -49.13 11.29 21.45 0.24 -48.89 16 8 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 C 0.52 23.89 6.77 87.66 0.59 24.48 16 13 O -0.55 -29.32 12.20 -3.06 -0.04 -29.36 16 14 N -0.56 -20.02 3.10 -654.18 -2.03 -22.05 16 15 C 0.05 1.35 9.51 127.77 1.21 2.56 16 16 C 0.09 3.18 6.50 38.24 0.25 3.43 16 17 C -0.12 -2.76 9.36 22.58 0.21 -2.55 16 18 C -0.13 -2.55 10.10 22.34 0.23 -2.32 16 19 C 0.05 1.16 11.18 84.70 0.95 2.11 16 20 N -0.49 -17.69 10.35 -195.33 -2.02 -19.71 16 21 C 0.02 0.72 10.15 84.84 0.86 1.58 16 22 H 0.06 2.16 5.67 -2.39 -0.01 2.15 16 23 H 0.08 3.87 5.95 -2.39 -0.01 3.86 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.27 13.71 8.31 -92.71 -0.77 12.93 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 2.49 4.22 -2.39 -0.01 2.48 16 28 H 0.11 1.82 6.22 -2.39 -0.01 1.80 16 29 H 0.17 2.62 6.23 -2.91 -0.02 2.60 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.17 7.88 4.76 -39.55 -0.19 7.69 16 Total: -1.00 -70.17 263.78 4.72 -65.45 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.97 Total: 10.57 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.57 Total: -2.31 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.81 Total: -90.65 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.04 Total: -29.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.17 4.72 -65.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597219481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.491 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds