Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.78846 * 2 1 4 4 C 1.38186 * 119.16280 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.76589 * 0.02562 * 4 3 2 6 6 C 1.31858 * 121.72721 * 359.68654 * 5 4 3 7 7 C 1.38228 * 120.75872 * 0.58095 * 6 5 4 8 8 C 1.50706 * 120.41861 * 179.72821 * 7 6 5 9 9 C 1.52999 * 109.46953 * 264.72344 * 8 7 6 10 10 N 1.46506 * 109.46684 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 8 12 12 O 1.21695 * 119.99811 * 359.97438 * 11 10 9 13 13 C 1.46376 * 120.00195 * 180.02562 * 11 10 9 14 14 H 1.07999 * 119.99764 * 359.97438 * 13 11 10 15 15 C 1.40037 * 120.00112 * 180.02562 * 13 11 10 16 16 N 1.30672 * 120.00499 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00016 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99670 * 17 15 13 20 20 H 1.48500 * 109.47148 * 239.99461 * 17 15 13 21 21 H 1.09000 * 109.46958 * 269.97937 * 1 2 3 22 22 H 1.08999 * 109.47396 * 29.98324 * 1 2 3 23 23 H 1.09003 * 109.47187 * 149.97771 * 1 2 3 24 24 H 1.08000 * 120.41921 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.61712 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.62249 * 180.28704 * 6 5 4 27 27 H 1.09000 * 109.46974 * 144.72092 * 8 7 6 28 28 H 1.09001 * 109.46547 * 24.72183 * 8 7 6 29 29 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 31 31 H 0.96995 * 120.00050 * 359.72237 * 10 9 8 32 32 H 0.97000 * 120.00986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4908 -2.5116 -0.0005 9 6 1.1341 -2.8978 -1.4374 10 7 0.4280 -4.1815 -1.4369 11 6 0.0139 -4.7231 -2.5995 12 8 0.2261 -4.1457 -3.6495 13 6 -0.6921 -6.0054 -2.5992 14 1 -0.8808 -6.5176 -1.6673 15 6 -1.1219 -6.5684 -3.8072 16 7 -0.8932 -5.9489 -4.9348 17 14 -2.0223 -8.2051 -3.8067 18 1 -2.1537 -8.6974 -2.4119 19 1 -3.3725 -8.0275 -4.3987 20 1 -1.2559 -9.1919 -4.6093 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6966 2.1377 -0.0004 25 1 4.1582 2.0754 -0.0010 26 1 4.1586 -2.0750 0.0077 27 1 0.5785 -2.4247 0.5896 28 1 2.1325 -3.2786 0.4333 29 1 2.0464 -2.9847 -2.0275 30 1 0.4925 -2.1308 -1.8711 31 1 0.2624 -4.6436 -0.6004 32 1 -1.1913 -6.3387 -5.7715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597977704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -21.693358 kcal Electronic energy + Delta-G solvation = -15565.930454 eV Core-core repulsion = 12911.702937 eV Total energy + Delta-G solvation = -2654.227517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33928 -37.37617 -35.10470 -33.41902 -32.47185 -31.69781 -28.71454 -27.69939 -26.09319 -23.48076 -22.37522 -20.98768 -19.69277 -17.19291 -16.73565 -16.37705 -15.44286 -15.12906 -14.60338 -14.25499 -13.96821 -13.94062 -13.18393 -12.87375 -12.66721 -12.56116 -12.38393 -12.03323 -11.51702 -11.36054 -11.13007 -11.05131 -10.65639 -10.46865 -10.20146 -9.42633 -9.40432 -8.89646 -8.86366 -7.62061 -7.52217 -6.18967 -4.64656 1.12561 1.26202 3.12717 3.20860 3.25256 3.78244 4.10135 4.43220 4.58848 4.65821 4.69634 4.84710 4.96181 5.21396 5.34510 5.45617 5.49595 5.56277 5.61880 5.73848 5.79922 5.92011 5.98240 6.08107 6.34748 6.55590 6.57530 6.74626 7.43087 7.92051 7.99003 8.07843 8.32226 9.02231 9.52703 10.59785 10.78235 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054022 B = 0.004599 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.182577 B = 6086.724641 C = 6157.913508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.037 4.037 3 C -0.175 4.175 4 C 0.090 3.910 5 N -0.490 5.490 6 C 0.105 3.895 7 C -0.123 4.123 8 C -0.089 4.089 9 C 0.139 3.861 10 N -0.769 5.769 11 C 0.553 3.447 12 O -0.581 6.581 13 C -0.546 4.546 14 H 0.068 0.932 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.380 0.620 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 9.766 11.629 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 C -0.195 4.195 4 C -0.067 4.067 5 N -0.199 5.199 6 C -0.052 4.052 7 C -0.126 4.126 8 C -0.127 4.127 9 C 0.014 3.986 10 N -0.425 5.425 11 C 0.357 3.643 12 O -0.464 6.464 13 C -0.583 4.583 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.094 0.906 22 H 0.089 0.911 23 H 0.101 0.899 24 H 0.150 0.850 25 H 0.169 0.831 26 H 0.172 0.828 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.212 0.788 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.265 10.216 10.624 15.344 hybrid contribution -1.380 -0.916 0.362 1.696 sum 2.884 9.300 10.985 14.680 Atomic orbital electron populations 1.20939 0.90211 1.04155 1.02771 1.20257 0.96901 0.92452 0.94862 1.22010 0.95624 0.98516 1.03320 1.22672 0.91766 0.96205 0.96053 1.67664 1.41254 0.98507 1.12462 1.22711 0.91149 0.96233 0.95114 1.20747 0.95081 0.95647 1.01112 1.20784 1.00219 0.92940 0.98760 1.20809 0.96697 0.88010 0.93057 1.46152 1.64136 1.22047 1.10140 1.18248 0.78826 0.85946 0.81268 1.90607 1.60501 1.64327 1.30935 1.20921 1.38867 1.04730 0.93743 0.91356 1.25711 0.94458 0.98047 0.95027 1.70031 1.35464 1.36068 0.98162 0.86322 0.79327 0.82069 0.79057 1.18774 1.20173 1.20165 0.90603 0.91086 0.89903 0.85035 0.83088 0.82753 0.90336 0.90327 0.93306 0.93281 0.78846 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.31 36.00 0.34 -1.01 16 2 C -0.04 -0.46 5.92 -104.32 -0.62 -1.07 16 3 C -0.17 -1.95 9.82 -39.44 -0.39 -2.34 16 4 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 5 N -0.49 -6.88 10.36 -13.25 -0.14 -7.01 16 6 C 0.10 1.43 10.84 -17.54 -0.19 1.24 16 7 C -0.12 -1.66 5.15 -104.48 -0.54 -2.20 16 8 C -0.09 -1.21 4.79 -27.88 -0.13 -1.34 16 9 C 0.14 2.63 5.49 -4.04 -0.02 2.61 16 10 N -0.77 -16.89 5.55 -61.72 -0.34 -17.23 16 11 C 0.55 15.78 7.75 -12.99 -0.10 15.68 16 12 O -0.58 -19.05 15.02 5.19 0.08 -18.97 16 13 C -0.55 -15.38 9.54 -35.64 -0.34 -15.72 16 14 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 15 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 16 N -0.77 -23.18 11.83 55.55 0.66 -22.52 16 17 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.08 1.04 5.64 -51.93 -0.29 0.75 16 24 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 25 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.08 0.97 7.10 -51.93 -0.37 0.61 16 28 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.99 6.97 -51.93 -0.36 0.63 16 31 H 0.38 7.16 8.45 -40.82 -0.35 6.82 16 32 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -35.33 279.85 -6.71 -42.04 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.87 Total: 5.40 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.29 Total: -0.95 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.18 Total: -46.76 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.33 -6.71 -42.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597977704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.342 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds