Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.78846 * 2 1 4 4 C 1.38186 * 119.16280 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.76589 * 0.02562 * 4 3 2 6 6 C 1.31858 * 121.72721 * 359.68654 * 5 4 3 7 7 C 1.38228 * 120.75872 * 0.58095 * 6 5 4 8 8 C 1.50706 * 120.41861 * 179.72821 * 7 6 5 9 9 C 1.52999 * 109.46953 * 264.72344 * 8 7 6 10 10 N 1.46506 * 109.46684 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99873 * 180.02562 * 10 9 8 12 12 O 1.21695 * 119.99811 * 359.97438 * 11 10 9 13 13 C 1.46376 * 120.00195 * 180.02562 * 11 10 9 14 14 H 1.07999 * 119.99764 * 359.97438 * 13 11 10 15 15 C 1.40037 * 120.00112 * 180.02562 * 13 11 10 16 16 N 1.30672 * 120.00499 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00016 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99670 * 17 15 13 20 20 H 1.48500 * 109.47148 * 239.99461 * 17 15 13 21 21 H 1.09000 * 109.46958 * 269.97937 * 1 2 3 22 22 H 1.08999 * 109.47396 * 29.98324 * 1 2 3 23 23 H 1.09003 * 109.47187 * 149.97771 * 1 2 3 24 24 H 1.08000 * 120.41921 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.61712 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.62249 * 180.28704 * 6 5 4 27 27 H 1.09000 * 109.46974 * 144.72092 * 8 7 6 28 28 H 1.09001 * 109.46547 * 24.72183 * 8 7 6 29 29 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 31 31 H 0.96995 * 120.00050 * 359.72237 * 10 9 8 32 32 H 0.97000 * 120.00986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4908 -2.5116 -0.0005 9 6 1.1341 -2.8978 -1.4374 10 7 0.4280 -4.1815 -1.4369 11 6 0.0139 -4.7231 -2.5995 12 8 0.2261 -4.1457 -3.6495 13 6 -0.6921 -6.0054 -2.5992 14 1 -0.8808 -6.5176 -1.6673 15 6 -1.1219 -6.5684 -3.8072 16 7 -0.8932 -5.9489 -4.9348 17 14 -2.0223 -8.2051 -3.8067 18 1 -2.1537 -8.6974 -2.4119 19 1 -3.3725 -8.0275 -4.3987 20 1 -1.2559 -9.1919 -4.6093 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6966 2.1377 -0.0004 25 1 4.1582 2.0754 -0.0010 26 1 4.1586 -2.0750 0.0077 27 1 0.5785 -2.4247 0.5896 28 1 2.1325 -3.2786 0.4333 29 1 2.0464 -2.9847 -2.0275 30 1 0.4925 -2.1308 -1.8711 31 1 0.2624 -4.6436 -0.6004 32 1 -1.1913 -6.3387 -5.7715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597977704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = -47.393892 kcal Electronic energy + Delta-G solvation = -15567.044913 eV Core-core repulsion = 12911.702937 eV Total energy + Delta-G solvation = -2655.341976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31341 -39.40033 -36.51606 -34.85393 -34.41407 -33.11944 -30.07820 -28.81976 -27.93237 -24.82623 -23.41353 -22.09916 -21.73671 -19.19316 -17.75306 -17.49467 -17.26281 -16.55903 -16.00324 -15.78256 -15.60166 -15.10607 -14.38729 -14.26575 -14.09332 -13.74099 -13.55815 -13.34511 -13.06475 -12.91679 -12.80958 -12.60485 -12.34764 -12.08649 -11.96319 -10.94739 -10.40958 -10.33639 -9.96464 -9.81907 -9.50230 -8.29168 -6.85791 0.16487 0.30642 1.41419 1.41690 1.59903 2.25395 2.47204 2.79525 3.11621 3.58915 3.61663 3.80964 3.84374 3.97078 4.06476 4.18676 4.36602 4.48255 4.62100 4.68297 4.75008 4.86886 4.92119 5.03395 5.17563 5.25449 5.32736 5.46432 5.81368 5.87993 6.23264 6.26661 6.87052 7.03343 7.55955 8.49183 8.67590 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054022 B = 0.004599 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.182577 B = 6086.724641 C = 6157.913508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.046 4.046 3 C -0.172 4.172 4 C 0.085 3.915 5 N -0.516 5.516 6 C 0.091 3.909 7 C -0.141 4.141 8 C -0.069 4.069 9 C 0.145 3.855 10 N -0.754 5.754 11 C 0.535 3.465 12 O -0.636 6.636 13 C -0.572 4.572 14 H 0.091 0.909 15 C 0.027 3.973 16 N -0.824 5.824 17 Si 1.000 3.000 18 H -0.245 1.245 19 H -0.269 1.269 20 H -0.270 1.270 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.163 0.837 25 H 0.181 0.819 26 H 0.162 0.838 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.023 0.977 30 H 0.031 0.969 31 H 0.398 0.602 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 9.561 13.421 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C -0.192 4.192 4 C -0.071 4.071 5 N -0.225 5.225 6 C -0.065 4.065 7 C -0.143 4.143 8 C -0.107 4.107 9 C 0.020 3.980 10 N -0.409 5.409 11 C 0.339 3.661 12 O -0.523 6.523 13 C -0.608 4.608 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.454 5.454 17 Si 0.819 3.181 18 H -0.167 1.167 19 H -0.194 1.194 20 H -0.195 1.195 21 H 0.114 0.886 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.181 0.819 25 H 0.198 0.802 26 H 0.179 0.821 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.232 0.768 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.490 10.021 12.492 16.391 hybrid contribution -1.086 -0.724 -0.172 1.317 sum 2.404 9.297 12.319 15.620 Atomic orbital electron populations 1.20949 0.89188 1.03733 1.03935 1.20580 0.97824 0.92684 0.94348 1.22352 0.95510 0.99342 1.01973 1.23245 0.92558 0.96575 0.94768 1.67689 1.42069 0.99244 1.13541 1.22895 0.91479 0.96738 0.95408 1.20730 0.95138 0.95793 1.02683 1.20584 1.01377 0.93779 0.94983 1.20825 0.94690 0.86000 0.96446 1.45782 1.62989 1.22843 1.09245 1.18685 0.78932 0.86485 0.82015 1.90559 1.62668 1.65780 1.33333 1.21484 1.39103 1.05061 0.95198 0.89097 1.27011 0.94887 1.02779 0.94095 1.70204 1.37023 1.38812 0.99367 0.84942 0.77529 0.75568 0.80044 1.16746 1.19375 1.19498 0.88552 0.89727 0.92076 0.81925 0.80201 0.82126 0.88623 0.88776 0.95827 0.95020 0.76755 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 9.31 71.24 0.66 -1.77 16 2 C -0.05 -1.08 5.92 -19.67 -0.12 -1.20 16 3 C -0.17 -3.44 9.82 22.36 0.22 -3.22 16 4 C 0.08 1.84 11.18 84.67 0.95 2.78 16 5 N -0.52 -14.06 10.36 -195.84 -2.03 -16.09 16 6 C 0.09 2.45 10.84 84.69 0.92 3.37 16 7 C -0.14 -3.69 5.15 -19.77 -0.10 -3.79 16 8 C -0.07 -1.83 4.79 29.85 0.14 -1.69 16 9 C 0.15 5.61 5.49 86.38 0.47 6.09 16 10 N -0.75 -33.41 5.55 -467.39 -2.59 -36.00 16 11 C 0.53 31.27 7.75 86.36 0.67 31.94 16 12 O -0.64 -43.51 15.02 -4.33 -0.07 -43.58 16 13 C -0.57 -32.31 9.54 24.83 0.24 -32.07 16 14 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 15 C 0.03 1.51 5.50 85.30 0.47 1.98 16 16 N -0.82 -50.96 11.83 21.83 0.26 -50.70 16 17 Si 1.00 40.71 29.56 68.60 2.03 42.74 16 18 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 23 H 0.06 1.50 5.64 -2.39 -0.01 1.49 16 24 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 25 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.10 2.21 7.10 -2.39 -0.02 2.19 16 28 H 0.09 2.20 8.06 -2.39 -0.02 2.18 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 1.33 6.97 -2.39 -0.02 1.32 16 31 H 0.40 14.66 8.45 -92.71 -0.78 13.87 16 32 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -79.23 279.85 2.47 -76.76 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.35 Total: 24.46 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.52 Total: 2.41 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -4.37 Total: -102.79 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.07 Total: -43.58 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -79.23 2.47 -76.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597977704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.364 kcal (2) G-P(sol) polarization free energy of solvation -79.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds