Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.89030 * 59.29459 * 9 7 2 11 11 C 1.55164 * 111.00540 * 183.17878 * 9 7 2 12 12 C 1.54320 * 102.94427 * 153.57193 * 11 9 7 13 13 N 1.47022 * 107.27096 * 337.80638 * 12 11 9 14 14 C 1.34773 * 125.65093 * 178.99429 * 13 12 11 15 15 O 1.21688 * 120.00805 * 179.97438 * 14 13 12 16 16 C 1.46683 * 119.99827 * 359.97438 * 14 13 12 17 17 C 1.37872 * 126.23705 * 180.02562 * 16 14 13 18 18 C 1.39835 * 107.08680 * 179.97438 * 17 16 14 19 19 C 1.35451 * 107.86342 * 359.97438 * 18 17 16 20 20 N 1.35532 * 108.87192 * 359.73367 * 19 18 17 21 21 H 0.96999 * 125.67560 * 180.29840 * 20 19 18 22 22 C 1.47467 * 108.72381 * 358.97382 * 13 12 11 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.08998 * 110.71895 * 271.93961 * 11 9 7 25 25 H 1.08997 * 110.71669 * 35.20535 * 11 9 7 26 26 H 1.08997 * 109.88327 * 97.22026 * 12 11 9 27 27 H 1.08997 * 109.88589 * 218.38877 * 12 11 9 28 28 H 1.08003 * 126.45367 * 359.95799 * 17 16 14 29 29 H 1.08001 * 126.06522 * 179.97438 * 18 17 16 30 30 H 1.07997 * 125.56138 * 179.97438 * 19 18 17 31 31 H 1.08998 * 110.35040 * 265.25121 * 22 13 12 32 32 H 1.09006 * 110.40850 * 142.91528 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6068 -2.5759 -0.8752 11 6 2.2255 -3.7039 0.0815 12 6 1.3642 -4.8015 0.7409 13 7 0.2765 -4.1269 1.4643 14 6 -0.7039 -4.7391 2.1576 15 8 -1.5559 -4.0773 2.7203 16 6 -0.7438 -6.2034 2.2337 17 6 -1.6828 -6.9594 2.9028 18 6 -1.3409 -8.3019 2.7124 19 6 -0.2242 -8.3417 1.9468 20 7 0.1452 -7.0733 1.6441 21 1 0.9102 -6.8206 1.1038 22 6 0.4356 -2.6694 1.3066 23 1 -0.4850 -0.8401 -0.0004 24 1 2.5438 -4.0101 -0.9150 25 1 3.0862 -3.4624 0.7051 26 1 0.9494 -5.4571 -0.0247 27 1 1.9704 -5.3796 1.4382 28 1 -2.5238 -6.5852 3.4677 29 1 -1.8729 -9.1555 3.1058 30 1 0.2861 -9.2380 1.6265 31 1 0.9831 -2.2541 2.1526 32 1 -0.5382 -2.1889 1.2111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701319036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = 11.513032 kcal Electronic energy + Delta-G solvation = -16284.208597 eV Core-core repulsion = 13631.421017 eV Total energy + Delta-G solvation = -2652.787580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.23689 -38.98997 -36.92486 -33.44183 -31.23156 -30.64715 -29.17037 -27.96849 -25.02833 -23.26751 -21.16500 -20.82327 -19.98200 -19.83719 -17.64818 -16.88390 -15.93349 -15.50663 -14.81580 -14.32770 -13.81095 -13.72881 -13.42946 -13.25631 -12.80786 -12.47709 -12.33135 -12.21300 -11.76712 -11.57387 -10.91155 -10.83993 -10.19654 -10.13161 -9.75905 -9.68765 -8.98507 -8.72249 -8.53404 -8.33619 -8.01530 -6.45684 -4.22694 1.64366 2.79772 3.14475 3.38317 3.40246 3.47873 3.59820 3.67994 4.45203 4.82518 5.01330 5.05656 5.23259 5.23886 5.37463 5.42897 5.52913 5.88012 6.11024 6.11518 6.20288 6.42757 6.53463 6.64153 6.66008 6.80010 6.94525 7.03649 7.34480 7.40046 7.95731 8.01817 8.28690 8.52669 8.72784 9.50196 10.91006 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054701 B = 0.005989 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.753251 B = 4674.035901 C = 5071.949669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.599 4.599 8 H 0.055 0.945 9 C 0.030 3.970 10 H 0.033 0.967 11 C -0.118 4.118 12 C 0.090 3.910 13 N -0.615 5.615 14 C 0.591 3.409 15 O -0.535 6.535 16 C -0.041 4.041 17 C -0.118 4.118 18 C -0.213 4.213 19 C 0.007 3.993 20 N -0.543 5.543 21 H 0.418 0.582 22 C 0.107 3.893 23 H 0.272 0.728 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.168 0.832 31 H 0.063 0.937 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -14.879 1.525 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.074 0.926 9 C 0.010 3.990 10 H 0.051 0.949 11 C -0.156 4.156 12 C -0.034 4.034 13 N -0.348 5.348 14 C 0.380 3.620 15 O -0.413 6.413 16 C -0.154 4.154 17 C -0.144 4.144 18 C -0.237 4.237 19 C -0.128 4.128 20 N -0.144 5.144 21 H 0.260 0.740 22 C -0.014 4.014 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.185 0.815 31 H 0.081 0.919 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.361 -12.800 1.767 13.135 hybrid contribution 0.615 -1.816 -0.247 1.933 sum 2.976 -14.616 1.519 14.993 Atomic orbital electron populations 1.70831 1.06894 1.31158 1.44916 1.25909 0.96469 1.02869 0.93113 0.83519 0.74904 0.75234 0.76566 1.20653 1.21359 1.21323 1.21797 0.94150 0.90561 1.57205 0.92626 1.20028 0.92953 0.93781 0.92195 0.94940 1.22620 0.98436 0.95049 0.99531 1.22203 0.89394 0.96973 0.94788 1.48794 1.25911 1.10008 1.50109 1.16802 0.81167 0.84933 0.79119 1.90823 1.38614 1.65113 1.46729 1.20656 0.97115 0.90076 1.07576 1.21297 0.99287 0.92321 1.01494 1.20857 0.99613 0.96932 1.06302 1.22013 0.99833 0.87249 1.03747 1.42777 1.24533 1.06215 1.40840 0.73980 1.23042 1.01552 0.76167 1.00624 0.91538 0.91257 0.90901 0.92576 0.92595 0.83636 0.84159 0.81485 0.91870 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.47 55.43 0.75 -25.88 16 2 C 0.02 0.61 5.35 -17.82 -0.10 0.52 16 3 Si 1.07 24.27 29.90 -169.99 -5.08 19.18 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.60 -15.81 8.52 -34.44 -0.29 -16.10 16 8 H 0.06 1.44 7.78 -52.48 -0.41 1.03 16 9 C 0.03 0.70 2.53 -89.62 -0.23 0.47 16 10 H 0.03 0.82 8.01 -51.93 -0.42 0.41 16 11 C -0.12 -2.15 6.39 -24.89 -0.16 -2.31 16 12 C 0.09 1.43 5.11 -3.07 -0.02 1.42 16 13 N -0.62 -12.41 3.33 -172.03 -0.57 -12.98 16 14 C 0.59 12.21 7.82 -12.85 -0.10 12.11 16 15 O -0.54 -12.96 17.14 5.20 0.09 -12.87 16 16 C -0.04 -0.68 6.89 -81.98 -0.56 -1.24 16 17 C -0.12 -1.79 10.65 -39.12 -0.42 -2.21 16 18 C -0.21 -2.55 10.81 -39.98 -0.43 -2.99 16 19 C 0.01 0.08 11.89 -16.91 -0.20 -0.12 16 20 N -0.54 -6.96 5.61 -9.39 -0.05 -7.02 16 21 H 0.42 4.57 4.92 -40.82 -0.20 4.37 16 22 C 0.11 2.54 5.71 -2.50 -0.01 2.53 16 23 H 0.27 8.04 5.47 -40.82 -0.22 7.82 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 26 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 27 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16 28 H 0.15 2.17 8.06 -52.48 -0.42 1.74 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.06 1.58 8.03 -51.93 -0.42 1.16 16 32 H 0.07 1.95 6.45 -51.93 -0.34 1.62 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -32.05 267.78 -7.01 -39.06 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.65 Total: 4.40 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.52 Total: -7.93 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.12 Total: -45.88 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.05 -7.01 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701319036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.573 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds