Wall clock time and date at job start Mon Mar 30 2020 03:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36350 * 125.63651 * 2 1 4 4 C 1.34846 * 108.21696 * 179.97438 * 3 2 1 5 5 C 1.40889 * 107.42148 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.29328 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.21749 * 158.09499 * 6 5 4 8 8 N 1.46755 * 110.24625 * 36.07126 * 6 5 4 9 9 C 1.34425 * 111.30020 * 223.98205 * 8 6 5 10 10 O 1.21286 * 124.93812 * 180.67208 * 9 8 6 11 11 C 1.51281 * 110.11800 * 0.40894 * 9 8 6 12 12 C 1.54484 * 110.24527 * 280.02180 * 6 5 4 13 13 H 1.09004 * 110.96781 * 262.53460 * 12 6 5 14 14 C 1.50702 * 110.96719 * 26.29741 * 12 6 5 15 15 H 1.07996 * 120.00021 * 47.39128 * 14 12 6 16 16 C 1.37875 * 119.99672 * 227.38183 * 14 12 6 17 17 N 1.31517 * 119.99680 * 173.34133 * 16 14 12 18 18 Si 1.86802 * 120.00374 * 353.34405 * 16 14 12 19 19 H 1.48498 * 109.47078 * 85.87443 * 18 16 14 20 20 H 1.48495 * 109.46993 * 205.87414 * 18 16 14 21 21 H 1.48504 * 109.46775 * 325.87188 * 18 16 14 22 22 C 1.34855 * 107.41728 * 0.22513 * 5 4 3 23 23 H 1.09002 * 109.47242 * 89.97196 * 1 2 3 24 24 H 1.08999 * 109.47305 * 209.97480 * 1 2 3 25 25 H 1.09001 * 109.47012 * 329.97404 * 1 2 3 26 26 H 1.07999 * 125.88635 * 359.97438 * 3 2 1 27 27 H 1.08003 * 126.29379 * 179.97438 * 4 3 2 28 28 H 0.97004 * 124.35158 * 43.98433 * 8 6 5 29 29 H 1.08993 * 110.48411 * 134.92740 * 11 9 8 30 30 H 1.08990 * 110.48389 * 257.44304 * 11 9 8 31 31 H 0.97001 * 119.99675 * 180.02562 * 17 16 14 32 32 H 1.08000 * 125.89210 * 179.74815 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5460 0.7045 0.0006 5 6 3.5461 -0.7044 0.0003 6 6 4.7607 -1.5964 0.0003 7 1 4.5026 -2.5844 0.3817 8 7 5.8287 -1.0001 0.8111 9 6 7.0196 -1.0924 0.1943 10 8 8.0699 -0.6902 0.6481 11 6 6.8599 -1.7767 -1.1454 12 6 5.3410 -1.7093 -1.4270 13 1 4.9945 -2.6187 -1.9181 14 6 4.9978 -0.4920 -2.2465 15 1 5.1444 0.4954 -1.8342 16 6 4.4970 -0.6388 -3.5226 17 7 4.0751 0.4139 -4.1886 18 14 4.4176 -2.3329 -4.3057 19 1 3.1547 -3.0043 -3.9060 20 1 4.4597 -2.1974 -5.7838 21 1 5.5751 -3.1437 -3.8497 22 6 2.2594 -1.1081 -0.0054 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 1.9171 2.1325 -0.0004 27 1 4.4166 1.3437 0.0003 28 1 5.6929 -0.5918 1.6805 29 1 7.4148 -1.2413 -1.9157 30 1 7.1934 -2.8127 -1.0867 31 1 3.7224 0.3105 -5.0863 32 1 1.9172 -2.1325 -0.0110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709954452.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:49 Heat of formation + Delta-G solvation = -2.005715 kcal Electronic energy + Delta-G solvation = -16728.439392 eV Core-core repulsion = 14075.065595 eV Total energy + Delta-G solvation = -2653.373797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.98654 -40.73818 -37.57025 -34.56720 -33.47174 -32.15765 -30.19842 -28.40745 -26.99933 -25.69910 -21.92648 -21.38705 -20.98335 -20.19890 -18.96649 -18.29563 -17.24304 -16.63324 -15.99892 -15.82215 -15.39795 -14.78299 -14.71964 -14.39503 -14.14038 -13.84552 -13.47193 -13.24580 -13.09401 -12.85362 -12.70957 -12.48155 -12.18311 -11.78852 -11.69688 -11.11768 -10.70551 -10.50505 -9.92084 -8.97460 -8.66812 -8.09529 -6.08295 1.43344 1.48165 1.55847 1.61874 1.76487 2.28823 2.41246 2.48505 2.82382 3.22100 3.82853 4.15602 4.28473 4.37499 4.42490 4.54918 4.55053 4.61126 4.77123 4.77856 4.82161 5.00690 5.19392 5.37519 5.54770 5.70119 5.84768 6.10683 6.23604 6.34755 6.50936 6.58488 6.82871 6.95567 7.48066 7.51852 9.06735 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.013648 C = 0.008918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.428488 B = 2051.146040 C = 3139.021203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.455 5.455 3 C -0.037 4.037 4 C -0.176 4.176 5 C -0.150 4.150 6 C 0.205 3.795 7 H 0.100 0.900 8 N -0.702 5.702 9 C 0.522 3.478 10 O -0.603 6.603 11 C -0.157 4.157 12 C 0.009 3.991 13 H 0.070 0.930 14 C -0.469 4.469 15 H 0.036 0.964 16 C 0.016 3.984 17 N -0.949 5.949 18 Si 0.931 3.069 19 H -0.263 1.263 20 H -0.303 1.303 21 H -0.241 1.241 22 C -0.020 4.020 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.166 0.834 27 H 0.095 0.905 28 H 0.406 0.594 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.257 0.743 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -6.751 8.455 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.132 5.132 3 C -0.166 4.166 4 C -0.201 4.201 5 C -0.158 4.158 6 C 0.100 3.900 7 H 0.118 0.882 8 N -0.354 5.354 9 C 0.311 3.689 10 O -0.486 6.486 11 C -0.197 4.197 12 C -0.011 4.011 13 H 0.088 0.912 14 C -0.507 4.507 15 H 0.055 0.945 16 C -0.181 4.181 17 N -0.590 5.590 18 Si 0.756 3.244 19 H -0.188 1.188 20 H -0.231 1.231 21 H -0.164 1.164 22 C -0.151 4.151 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.183 0.817 27 H 0.113 0.887 28 H 0.245 0.755 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.939 -6.548 8.418 13.916 hybrid contribution 0.015 0.363 -0.661 0.754 sum -8.924 -6.185 7.758 13.345 Atomic orbital electron populations 1.22168 0.75499 1.05698 1.03321 1.43945 1.07091 1.05275 1.56871 1.21793 0.90493 0.92187 1.12176 1.20403 0.95213 0.95215 1.09282 1.19223 0.93394 0.93732 1.09413 1.20304 0.84044 0.94232 0.91448 0.88201 1.46169 1.08204 1.59560 1.21435 1.21222 0.82789 0.77375 0.87545 1.90613 1.31346 1.54107 1.72552 1.22703 1.01178 1.01736 0.94093 1.20234 0.90343 0.97478 0.93039 0.91163 1.20816 1.39564 0.92287 0.97983 0.94546 1.25797 0.94701 0.99761 0.97808 1.70089 1.44273 1.32002 1.12621 0.85979 0.80293 0.81363 0.76768 1.18788 1.23069 1.16418 1.21728 0.89571 0.92355 1.11415 0.91696 0.87840 0.88597 0.81656 0.88709 0.75537 0.90218 0.86855 0.93372 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 11.12 127.77 1.42 2.85 16 2 N -0.46 -13.87 3.15 -547.90 -1.72 -15.60 16 3 C -0.04 -1.32 11.43 83.21 0.95 -0.37 16 4 C -0.18 -7.25 8.65 22.14 0.19 -7.06 16 5 C -0.15 -5.62 4.24 -19.99 -0.08 -5.71 16 6 C 0.20 7.27 3.87 44.70 0.17 7.44 16 7 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 8 N -0.70 -25.47 5.61 -442.96 -2.48 -27.95 16 9 C 0.52 21.89 8.43 87.90 0.74 22.63 16 10 O -0.60 -29.10 18.03 -3.05 -0.05 -29.16 16 11 C -0.16 -6.20 6.40 30.59 0.20 -6.00 16 12 C 0.01 0.36 2.82 -10.48 -0.03 0.33 16 13 H 0.07 2.71 5.14 -2.39 -0.01 2.70 16 14 C -0.47 -24.55 6.99 25.60 0.18 -24.37 16 15 H 0.04 2.21 6.49 -2.91 -0.02 2.19 16 16 C 0.02 0.85 5.47 84.65 0.46 1.31 16 17 N -0.95 -57.42 13.96 21.45 0.30 -57.12 16 18 Si 0.93 40.98 26.90 68.60 1.85 42.83 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.24 -9.53 6.91 99.48 0.69 -8.84 16 22 C -0.02 -0.66 11.35 83.21 0.94 0.29 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 27 H 0.09 4.35 7.68 -2.91 -0.02 4.33 16 28 H 0.41 13.36 8.96 -92.71 -0.83 12.52 16 29 H 0.08 3.46 7.90 -2.39 -0.02 3.44 16 30 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.18 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.82 270.86 3.31 -68.51 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.28 Total: 27.16 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.15 Total: -8.67 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.91 Total: -100.67 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.85 Total: 42.83 kcal Total: -71.82 3.31 -68.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954452.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.505 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds