Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2 15 15 C 1.47477 * 119.99917 * 179.97438 * 14 13 12 16 16 C 1.39711 * 120.09987 * 359.73700 * 15 14 13 17 17 C 1.37833 * 119.89926 * 179.73983 * 16 15 14 18 18 C 1.38873 * 120.09879 * 0.52458 * 17 16 15 19 19 O 1.35878 * 119.89704 * 179.69943 * 18 17 16 20 20 C 1.38865 * 120.19739 * 359.72466 * 18 17 16 21 21 C 1.37834 * 120.10694 * 0.02562 * 20 18 17 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 27 27 H 1.07994 * 119.99938 * 0.02562 * 14 13 12 28 28 H 1.08007 * 120.04947 * 359.96270 * 16 15 14 29 29 H 1.08001 * 119.94841 * 180.22461 * 17 16 15 30 30 H 0.96701 * 114.00321 * 270.02646 * 19 18 17 31 31 H 1.08000 * 119.94607 * 179.97438 * 20 18 17 32 32 H 1.07994 * 120.05274 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6848 -0.5814 -3.4341 15 6 2.9300 0.1771 -4.6749 16 6 2.6916 1.5532 -4.7136 17 6 2.9273 2.2589 -5.8739 18 6 3.3907 1.6023 -7.0065 19 8 3.6159 2.3010 -8.1499 20 6 3.6241 0.2338 -6.9740 21 6 3.3961 -0.4792 -5.8167 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.1799 -1.6467 -1.1723 27 1 2.8648 -1.6459 -3.4074 28 1 2.3265 2.0638 -3.8347 29 1 2.7467 3.3233 -5.9037 30 1 2.8482 2.3552 -8.7354 31 1 3.9841 -0.2728 -7.8573 32 1 3.5776 -1.5435 -5.7926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = 17.722985 kcal Electronic energy + Delta-G solvation = -15132.464045 eV Core-core repulsion = 12479.945749 eV Total energy + Delta-G solvation = -2652.518296 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53897 -37.12052 -36.06316 -33.96479 -31.60793 -30.91865 -29.59321 -26.86565 -25.25716 -23.20592 -22.52117 -20.55105 -20.02559 -18.37417 -17.09341 -16.19379 -15.76605 -15.24743 -14.94631 -14.69951 -13.95338 -13.44712 -13.32677 -12.87414 -12.54703 -12.25976 -11.91748 -11.69234 -11.43728 -11.04854 -10.88412 -10.60606 -10.42157 -10.27660 -10.24071 -9.58739 -9.09196 -8.91489 -8.68147 -8.48354 -6.82778 -6.17155 -4.25856 1.06948 1.48011 2.91667 3.23581 3.28423 3.29782 3.73388 3.96740 4.27516 4.33572 4.97093 5.03223 5.14889 5.18173 5.47847 5.62336 5.86491 5.95848 6.12260 6.34880 6.49824 6.64072 6.73257 6.89645 6.95234 6.96744 7.10493 7.53287 7.63557 7.72970 7.81130 8.09869 8.24898 8.80895 9.25398 9.41057 10.88700 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.058273 B = 0.004046 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.382496 B = 6918.121425 C = 7094.901633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.296 3.704 3 H 0.043 0.957 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.620 5.620 13 N -0.190 5.190 14 C -0.019 4.019 15 C -0.011 4.011 16 C -0.086 4.086 17 C -0.142 4.142 18 C 0.086 3.914 19 O -0.503 6.503 20 C -0.143 4.143 21 C -0.101 4.101 22 H 0.026 0.974 23 H 0.091 0.909 24 H 0.013 0.987 25 H 0.266 0.734 26 H 0.369 0.631 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.385 0.615 31 H 0.125 0.875 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -0.855 -15.887 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.060 0.940 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.356 5.356 13 N -0.004 5.004 14 C -0.226 4.226 15 C -0.013 4.013 16 C -0.107 4.107 17 C -0.161 4.161 18 C 0.041 3.959 19 O -0.312 6.312 20 C -0.162 4.162 21 C -0.121 4.121 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.205 0.795 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.240 0.760 31 H 0.143 0.857 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.130 0.308 -14.891 15.046 hybrid contribution 0.092 -1.754 0.473 1.819 sum 2.222 -1.446 -14.418 14.659 Atomic orbital electron populations 1.22207 0.98910 0.99240 1.00597 1.18568 0.90211 0.93604 0.78239 0.93962 1.21191 1.32445 1.13376 0.90206 0.92223 1.24860 0.94774 0.94982 0.98965 1.69878 1.35892 1.22454 1.24092 0.86470 0.79206 0.79588 0.81631 1.21035 1.20151 1.20145 1.49118 1.71839 1.07853 1.06789 1.73899 1.04057 1.28293 0.94128 1.23437 1.10130 0.96890 0.92182 1.18500 0.98127 0.92909 0.91790 1.21309 0.98071 0.93449 0.97828 1.21350 1.00991 1.00438 0.93280 1.18516 1.00703 0.89894 0.86792 1.84820 1.40415 1.74956 1.31027 1.21202 1.02800 0.93239 0.98963 1.21012 0.99625 0.99791 0.91717 0.95498 0.89095 0.96838 0.92449 0.79452 0.88024 0.84551 0.85614 0.76002 0.85706 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.29 37.16 0.35 -3.33 16 2 C 0.30 7.50 3.23 -69.09 -0.22 7.27 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -14.24 8.74 -34.44 -0.30 -14.54 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.62 -13.63 6.10 -5.88 -0.04 -13.67 16 13 N -0.19 -3.86 10.61 32.16 0.34 -3.52 16 14 C -0.02 -0.32 10.75 -14.67 -0.16 -0.47 16 15 C -0.01 -0.16 5.87 -105.04 -0.62 -0.78 16 16 C -0.09 -1.28 9.57 -39.18 -0.37 -1.65 16 17 C -0.14 -1.84 9.97 -39.49 -0.39 -2.23 16 18 C 0.09 1.05 6.71 -39.11 -0.26 0.79 16 19 O -0.50 -5.29 13.49 -19.36 -0.26 -5.55 16 20 C -0.14 -1.65 9.97 -39.50 -0.39 -2.04 16 21 C -0.10 -1.24 9.78 -39.18 -0.38 -1.62 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.37 7.50 8.58 -182.59 -1.57 5.93 16 27 H 0.10 1.51 8.02 -52.49 -0.42 1.09 16 28 H 0.14 2.15 7.55 -52.48 -0.40 1.75 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.38 2.12 9.06 45.56 0.41 2.53 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 285.54 15.07 4.30 4.30 Total: -1.00 -29.47 285.54 -7.27 -36.74 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.37 Total: 6.85 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -2.86 Total: -16.89 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.93 Total: -41.08 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.26 Total: -5.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.47 -7.27 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.463 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds