Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2 15 15 C 1.47477 * 119.99917 * 179.97438 * 14 13 12 16 16 C 1.39711 * 120.09987 * 359.73700 * 15 14 13 17 17 C 1.37833 * 119.89926 * 179.73983 * 16 15 14 18 18 C 1.38873 * 120.09879 * 0.52458 * 17 16 15 19 19 O 1.35878 * 119.89704 * 179.69943 * 18 17 16 20 20 C 1.38865 * 120.19739 * 359.72466 * 18 17 16 21 21 C 1.37834 * 120.10694 * 0.02562 * 20 18 17 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 27 27 H 1.07994 * 119.99938 * 0.02562 * 14 13 12 28 28 H 1.08007 * 120.04947 * 359.96270 * 16 15 14 29 29 H 1.08001 * 119.94841 * 180.22461 * 17 16 15 30 30 H 0.96701 * 114.00321 * 270.02646 * 19 18 17 31 31 H 1.08000 * 119.94607 * 179.97438 * 20 18 17 32 32 H 1.07994 * 120.05274 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6848 -0.5814 -3.4341 15 6 2.9300 0.1771 -4.6749 16 6 2.6916 1.5532 -4.7136 17 6 2.9273 2.2589 -5.8739 18 6 3.3907 1.6023 -7.0065 19 8 3.6159 2.3010 -8.1499 20 6 3.6241 0.2338 -6.9740 21 6 3.3961 -0.4792 -5.8167 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.1799 -1.6467 -1.1723 27 1 2.8648 -1.6459 -3.4074 28 1 2.3265 2.0638 -3.8347 29 1 2.7467 3.3233 -5.9037 30 1 2.8482 2.3552 -8.7354 31 1 3.9841 -0.2728 -7.8573 32 1 3.5776 -1.5435 -5.7926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = -2.436444 kcal Electronic energy + Delta-G solvation = -15133.338223 eV Core-core repulsion = 12479.945749 eV Total energy + Delta-G solvation = -2653.392475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52591 -38.35624 -37.41844 -35.70281 -33.34127 -31.92228 -30.99030 -28.41422 -27.28784 -24.42059 -23.57672 -22.29040 -21.39304 -19.27120 -18.83568 -17.60681 -17.22611 -16.67652 -16.18276 -15.88738 -15.40722 -14.79406 -14.50519 -14.31999 -14.27197 -13.72671 -13.17497 -13.07178 -12.86780 -12.81418 -12.58486 -12.38244 -12.18903 -12.05827 -11.36466 -11.15978 -10.88600 -10.59201 -9.90940 -9.81034 -8.37344 -8.17438 -6.36000 -0.01612 0.48319 1.42782 1.44702 1.52589 1.68867 2.16536 2.46734 2.92042 3.10345 3.38258 3.89571 4.03163 4.11759 4.46083 4.51037 4.71985 4.73799 4.95266 4.98519 5.08559 5.11983 5.20438 5.46679 5.50025 5.52360 5.63620 5.79950 5.89053 5.92838 6.17229 6.39867 6.82980 6.93061 7.35580 7.76749 8.86303 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.058273 B = 0.004046 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.382496 B = 6918.121425 C = 7094.901633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.306 3.694 3 H 0.000 1.000 4 C -0.550 4.550 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.273 1.273 12 N -0.640 5.640 13 N -0.244 5.244 14 C 0.024 3.976 15 C -0.048 4.048 16 C -0.096 4.096 17 C -0.154 4.154 18 C 0.101 3.899 19 O -0.509 6.509 20 C -0.144 4.144 21 C -0.083 4.083 22 H 0.031 0.969 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.267 0.733 26 H 0.374 0.626 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.410 0.590 31 H 0.155 0.845 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -2.147 -18.034 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.202 3.798 3 H 0.018 0.982 4 C -0.589 4.589 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.795 3.205 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.198 1.198 12 N -0.377 5.377 13 N -0.054 5.054 14 C -0.186 4.186 15 C -0.050 4.050 16 C -0.117 4.117 17 C -0.172 4.172 18 C 0.056 3.944 19 O -0.322 6.322 20 C -0.162 4.162 21 C -0.103 4.103 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.211 0.789 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.270 0.730 31 H 0.173 0.827 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.151 -0.982 -17.073 17.389 hybrid contribution -0.140 -1.274 0.742 1.481 sum 3.011 -2.255 -16.331 16.759 Atomic orbital electron populations 1.22017 0.98729 0.99103 0.99651 1.18123 0.90319 0.91595 0.79717 0.98184 1.21504 1.32662 1.13600 0.91173 0.92005 1.25720 0.94838 0.95631 1.01944 1.70011 1.36779 1.23684 1.24775 0.85419 0.78564 0.78690 0.77786 1.20619 1.19181 1.19833 1.48540 1.74548 1.07696 1.06878 1.73955 1.08008 1.28883 0.94568 1.24063 1.04802 0.98151 0.91586 1.18597 1.01273 0.93016 0.92116 1.21256 0.98605 0.93917 0.97923 1.21473 1.01518 1.01129 0.93102 1.18647 0.98512 0.90307 0.86952 1.84755 1.42062 1.74689 1.30691 1.21533 1.02030 0.92968 0.99666 1.21308 0.97284 1.01158 0.90586 0.95032 0.91252 0.96377 0.92362 0.78864 0.85754 0.86767 0.84532 0.73044 0.82692 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 9.29 71.98 0.67 -6.22 16 2 C 0.31 16.22 3.23 44.24 0.14 16.37 16 3 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 4 C -0.55 -30.14 8.74 25.60 0.22 -29.92 16 5 H 0.06 3.27 7.79 -2.91 -0.02 3.24 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -52.03 11.32 21.45 0.24 -51.79 16 8 Si 0.97 42.58 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.64 -29.01 6.10 -172.53 -1.05 -30.06 16 13 N -0.24 -10.17 10.61 -52.18 -0.55 -10.72 16 14 C 0.02 0.77 10.75 87.44 0.94 1.71 16 15 C -0.05 -1.35 5.87 -20.13 -0.12 -1.47 16 16 C -0.10 -2.84 9.57 22.53 0.22 -2.62 16 17 C -0.15 -3.75 9.97 22.33 0.22 -3.53 16 18 C 0.10 2.14 6.71 22.57 0.15 2.29 16 19 O -0.51 -8.80 13.49 -92.17 -1.24 -10.04 16 20 C -0.14 -2.71 9.97 22.32 0.22 -2.48 16 21 C -0.08 -1.74 9.78 22.53 0.22 -1.52 16 22 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 23 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 24 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.37 15.48 8.58 -213.31 -1.83 13.65 16 27 H 0.13 3.43 8.02 -2.91 -0.02 3.40 16 28 H 0.11 3.82 7.55 -2.91 -0.02 3.79 16 29 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.41 2.88 9.06 -74.06 -0.67 2.21 16 31 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -65.02 285.54 1.40 -63.62 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -1.36 Total: 20.29 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.34 Total: -25.90 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -1.36 Total: -92.57 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.24 Total: -10.04 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.02 1.40 -63.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.186 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds