Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50703 * 109.47419 * 120.00478 * 2 1 3 5 5 H 1.08000 * 120.00161 * 114.36264 * 4 2 1 6 6 C 1.37881 * 119.99525 * 294.36499 * 4 2 1 7 7 N 1.31513 * 119.99659 * 156.61593 * 6 4 2 8 8 Si 1.86802 * 120.00164 * 336.88542 * 6 4 2 9 9 H 1.48497 * 109.46648 * 179.72694 * 8 6 4 10 10 H 1.48498 * 109.47155 * 299.73023 * 8 6 4 11 11 H 1.48505 * 109.46685 * 59.72885 * 8 6 4 12 12 N 1.46496 * 109.47064 * 240.00524 * 2 1 3 13 13 N 1.40094 * 120.00360 * 89.99686 * 12 2 1 14 14 C 1.29745 * 120.00534 * 179.97438 * 13 12 2 15 15 C 1.47501 * 120.00466 * 180.02562 * 14 13 12 16 16 C 1.39719 * 120.12495 * 359.72042 * 15 14 13 17 17 C 1.37952 * 119.95056 * 179.78875 * 16 15 14 18 18 C 1.38296 * 120.21436 * 0.49323 * 17 16 15 19 19 C 1.38834 * 120.26021 * 359.74226 * 18 17 16 20 20 O 1.35907 * 119.98293 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.04487 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.46949 * 53.12525 * 1 2 3 23 23 H 1.08996 * 109.47111 * 173.12987 * 1 2 3 24 24 H 1.09003 * 109.46762 * 293.12824 * 1 2 3 25 25 H 0.96997 * 120.00046 * 355.20255 * 7 6 4 26 26 H 0.97007 * 119.99933 * 270.00345 * 12 2 1 27 27 H 1.08004 * 119.99620 * 0.02562 * 14 13 12 28 28 H 1.07997 * 120.02633 * 0.03120 * 16 15 14 29 29 H 1.07997 * 119.88700 * 180.23296 * 17 16 15 30 30 H 1.07993 * 119.86884 * 179.71521 * 18 17 16 31 31 H 0.96702 * 114.00106 * 270.02791 * 20 19 18 32 32 H 1.08004 * 120.11269 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1756 2.4794 7 7 1.8028 -0.9539 3.5395 8 14 1.4654 1.6532 2.6649 9 1 1.2395 1.9723 4.0974 10 1 2.6333 2.4219 2.1646 11 1 0.2589 2.0190 1.8799 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0300 -2.3748 14 6 2.6847 -0.5814 -3.4341 15 6 2.9311 0.1774 -4.6747 16 6 2.6935 1.5536 -4.7139 17 6 2.9292 2.2605 -5.8749 18 6 3.3907 1.6095 -7.0045 19 6 3.6251 0.2414 -6.9769 20 8 4.0781 -0.3927 -8.0903 21 6 3.3967 -0.4778 -5.8160 22 1 -0.3633 0.6167 -0.8221 23 1 -0.3633 -1.0202 -0.1229 24 1 -0.3633 0.4037 0.9451 25 1 1.9021 -1.9133 3.4364 26 1 2.1800 -1.6467 -1.1723 27 1 2.8648 -1.6460 -3.4074 28 1 2.3293 2.0644 -3.8348 29 1 2.7488 3.3249 -5.9029 30 1 3.5690 2.1676 -7.9117 31 1 3.3763 -0.7237 -8.6674 32 1 3.5790 -1.5421 -5.7931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = 18.017075 kcal Electronic energy + Delta-G solvation = -15214.274152 eV Core-core repulsion = 12561.768608 eV Total energy + Delta-G solvation = -2652.505544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.62033 -37.17801 -36.24238 -34.11800 -32.06001 -30.77711 -29.64989 -27.46487 -24.85159 -23.39993 -22.48854 -20.52344 -20.12490 -18.24280 -17.48822 -16.46807 -16.33642 -15.37803 -14.94578 -14.70435 -13.99277 -13.57331 -13.22603 -13.09178 -12.68705 -12.40222 -12.08733 -11.89313 -11.59399 -11.39455 -11.07690 -10.60311 -10.55172 -10.14311 -9.93299 -9.65586 -9.21963 -8.94938 -8.65479 -8.34317 -7.07840 -6.61029 -4.24617 1.04126 1.32433 2.83096 3.34124 3.39908 3.51029 3.59320 3.87803 4.21160 4.39492 4.89006 4.96744 5.07061 5.17680 5.38605 5.50597 5.73223 5.84376 6.04183 6.23405 6.34969 6.43291 6.52829 6.59013 6.62602 6.72792 6.84191 7.03041 7.30796 7.56691 7.82454 7.93125 8.23119 8.75512 9.08189 9.41577 10.74278 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.004507 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.051974 B = 6211.103963 C = 6524.703141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.276 3.724 3 H 0.035 0.965 4 C -0.625 4.625 5 H 0.061 0.939 6 C 0.045 3.955 7 N -0.889 5.889 8 Si 1.036 2.964 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.615 5.615 13 N -0.194 5.194 14 C -0.012 4.012 15 C 0.010 3.990 16 C -0.109 4.109 17 C -0.103 4.103 18 C -0.155 4.155 19 C 0.101 3.899 20 O -0.501 6.501 21 C -0.139 4.139 22 H 0.026 0.974 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.271 0.729 26 H 0.374 0.626 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.387 0.613 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 3.274 -19.070 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.172 3.828 3 H 0.052 0.948 4 C -0.663 4.663 5 H 0.079 0.921 6 C -0.162 4.162 7 N -0.521 5.521 8 Si 0.863 3.137 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.351 5.351 13 N -0.006 5.006 14 C -0.220 4.220 15 C 0.007 3.993 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.175 4.175 19 C 0.057 3.943 20 O -0.311 6.311 21 C -0.161 4.161 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.211 0.789 27 H 0.121 0.879 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.242 0.758 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.091 5.535 -17.081 17.956 hybrid contribution 0.148 -2.733 -1.509 3.126 sum 0.239 2.802 -18.590 18.802 Atomic orbital electron populations 1.22550 0.99405 1.00018 0.99812 1.18816 0.89693 0.93699 0.80546 0.94765 1.22034 1.42017 1.11368 0.90885 0.92104 1.25669 0.93005 1.06003 0.91554 1.70861 1.42942 1.06503 1.31830 0.84159 0.77574 0.75570 0.76435 1.20755 1.20630 1.19979 1.48803 1.71990 1.07972 1.06354 1.73873 1.04444 1.28235 0.94087 1.23462 1.09501 0.97017 0.92020 1.18293 0.96949 0.92816 0.91205 1.21441 0.99568 0.93469 0.98475 1.20970 0.98789 0.99893 0.92489 1.21383 1.02422 0.94162 0.99553 1.18256 0.98454 0.90648 0.86958 1.84832 1.36110 1.76248 1.33918 1.21382 1.01837 1.00346 0.92490 0.95444 0.93850 0.92246 0.91902 0.78928 0.87850 0.84772 0.85658 0.85872 0.75796 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.24 37.16 0.34 -3.18 16 2 C 0.28 6.62 2.83 -69.08 -0.20 6.43 16 3 H 0.03 0.85 6.72 -51.93 -0.35 0.50 16 4 C -0.62 -17.05 8.96 -34.44 -0.31 -17.36 16 5 H 0.06 1.77 8.01 -52.49 -0.42 1.35 16 6 C 0.05 1.27 5.19 -17.82 -0.09 1.18 16 7 N -0.89 -26.31 13.70 55.43 0.76 -25.55 16 8 Si 1.04 24.34 26.44 -169.99 -4.50 19.85 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.96 6.14 56.52 0.35 -5.61 16 12 N -0.62 -13.22 6.10 -5.88 -0.04 -13.26 16 13 N -0.19 -3.78 10.61 32.16 0.34 -3.44 16 14 C -0.01 -0.20 10.75 -14.66 -0.16 -0.36 16 15 C 0.01 0.14 5.87 -105.07 -0.62 -0.47 16 16 C -0.11 -1.52 9.58 -39.13 -0.37 -1.89 16 17 C -0.10 -1.19 10.02 -39.66 -0.40 -1.59 16 18 C -0.16 -1.72 9.98 -39.34 -0.39 -2.11 16 19 C 0.10 1.18 6.70 -39.28 -0.26 0.92 16 20 O -0.50 -5.06 13.50 -19.45 -0.26 -5.32 16 21 C -0.14 -1.76 9.73 -39.00 -0.38 -2.14 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.34 5.47 -51.93 -0.28 1.06 16 25 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 26 H 0.37 7.63 8.56 -182.60 -1.56 6.07 16 27 H 0.10 1.53 8.02 -52.48 -0.42 1.11 16 28 H 0.13 1.96 7.55 -52.49 -0.40 1.56 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.39 1.96 9.06 45.56 0.41 2.37 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -30.59 282.12 -6.62 -37.20 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.34 Total: 6.85 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.83 Total: -20.58 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 1.06 Total: -42.25 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.26 Total: -5.32 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.50 Total: 19.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.59 -6.62 -37.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.220 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds