Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50703 * 109.47419 * 120.00478 * 2 1 3 5 5 H 1.08000 * 120.00161 * 114.36264 * 4 2 1 6 6 C 1.37881 * 119.99525 * 294.36499 * 4 2 1 7 7 N 1.31513 * 119.99659 * 156.61593 * 6 4 2 8 8 Si 1.86802 * 120.00164 * 336.88542 * 6 4 2 9 9 H 1.48497 * 109.46648 * 179.72694 * 8 6 4 10 10 H 1.48498 * 109.47155 * 299.73023 * 8 6 4 11 11 H 1.48505 * 109.46685 * 59.72885 * 8 6 4 12 12 N 1.46496 * 109.47064 * 240.00524 * 2 1 3 13 13 N 1.40094 * 120.00360 * 89.99686 * 12 2 1 14 14 C 1.29745 * 120.00534 * 179.97438 * 13 12 2 15 15 C 1.47501 * 120.00466 * 180.02562 * 14 13 12 16 16 C 1.39719 * 120.12495 * 359.72042 * 15 14 13 17 17 C 1.37952 * 119.95056 * 179.78875 * 16 15 14 18 18 C 1.38296 * 120.21436 * 0.49323 * 17 16 15 19 19 C 1.38834 * 120.26021 * 359.74226 * 18 17 16 20 20 O 1.35907 * 119.98293 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.04487 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.46949 * 53.12525 * 1 2 3 23 23 H 1.08996 * 109.47111 * 173.12987 * 1 2 3 24 24 H 1.09003 * 109.46762 * 293.12824 * 1 2 3 25 25 H 0.96997 * 120.00046 * 355.20255 * 7 6 4 26 26 H 0.97007 * 119.99933 * 270.00345 * 12 2 1 27 27 H 1.08004 * 119.99620 * 0.02562 * 14 13 12 28 28 H 1.07997 * 120.02633 * 0.03120 * 16 15 14 29 29 H 1.07997 * 119.88700 * 180.23296 * 17 16 15 30 30 H 1.07993 * 119.86884 * 179.71521 * 18 17 16 31 31 H 0.96702 * 114.00106 * 270.02791 * 20 19 18 32 32 H 1.08004 * 120.11269 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1756 2.4794 7 7 1.8028 -0.9539 3.5395 8 14 1.4654 1.6532 2.6649 9 1 1.2395 1.9723 4.0974 10 1 2.6333 2.4219 2.1646 11 1 0.2589 2.0190 1.8799 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0300 -2.3748 14 6 2.6847 -0.5814 -3.4341 15 6 2.9311 0.1774 -4.6747 16 6 2.6935 1.5536 -4.7139 17 6 2.9292 2.2605 -5.8749 18 6 3.3907 1.6095 -7.0045 19 6 3.6251 0.2414 -6.9769 20 8 4.0781 -0.3927 -8.0903 21 6 3.3967 -0.4778 -5.8160 22 1 -0.3633 0.6167 -0.8221 23 1 -0.3633 -1.0202 -0.1229 24 1 -0.3633 0.4037 0.9451 25 1 1.9021 -1.9133 3.4364 26 1 2.1800 -1.6467 -1.1723 27 1 2.8648 -1.6460 -3.4074 28 1 2.3293 2.0644 -3.8348 29 1 2.7488 3.3249 -5.9029 30 1 3.5690 2.1676 -7.9117 31 1 3.3763 -0.7237 -8.6674 32 1 3.5790 -1.5421 -5.7931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = -4.152393 kcal Electronic energy + Delta-G solvation = -15215.235492 eV Core-core repulsion = 12561.768608 eV Total energy + Delta-G solvation = -2653.466884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55028 -38.41310 -37.47723 -35.81645 -33.82280 -32.05724 -30.69376 -28.91040 -26.84252 -24.63253 -23.44317 -22.07310 -21.55645 -19.88854 -18.83019 -17.79999 -17.31281 -16.64265 -16.17356 -15.90450 -15.39576 -14.99996 -14.71507 -14.52959 -14.31336 -13.95971 -13.51587 -13.24937 -12.91510 -12.64627 -12.47638 -12.37776 -11.95445 -11.71018 -11.48230 -11.21519 -11.04029 -10.47126 -10.10653 -9.61744 -8.90895 -8.46768 -6.45150 -0.01523 0.39690 1.47640 1.52713 1.63772 1.72909 2.06905 2.45039 2.88564 2.94278 3.34978 3.81777 4.00882 4.25335 4.35978 4.41281 4.53718 4.62433 4.77350 4.80127 4.86179 5.04318 5.09481 5.24883 5.46930 5.49334 5.55794 5.64989 5.91356 5.92854 5.95286 6.18711 6.64326 6.92221 7.29360 7.60137 8.52846 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.004507 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.051974 B = 6211.103963 C = 6524.703141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.283 3.717 3 H 0.028 0.972 4 C -0.627 4.627 5 H 0.027 0.973 6 C 0.000 4.000 7 N -0.921 5.921 8 Si 1.074 2.926 9 H -0.282 1.282 10 H -0.269 1.269 11 H -0.244 1.244 12 N -0.639 5.639 13 N -0.232 5.232 14 C 0.024 3.976 15 C -0.021 4.021 16 C -0.121 4.121 17 C -0.101 4.101 18 C -0.145 4.145 19 C 0.102 3.898 20 O -0.507 6.507 21 C -0.137 4.137 22 H 0.046 0.954 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.257 0.743 26 H 0.372 0.628 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.411 0.589 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 4.854 -22.178 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.178 3.822 3 H 0.046 0.954 4 C -0.666 4.666 5 H 0.045 0.955 6 C -0.202 4.202 7 N -0.554 5.554 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.168 1.168 12 N -0.375 5.375 13 N -0.042 5.042 14 C -0.186 4.186 15 C -0.023 4.023 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.164 4.164 19 C 0.057 3.943 20 O -0.321 6.321 21 C -0.158 4.158 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.209 0.791 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.270 0.730 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.048 7.101 -20.231 21.441 hybrid contribution 0.300 -3.305 -0.915 3.442 sum 0.348 3.796 -21.147 21.488 Atomic orbital electron populations 1.22413 0.98071 1.00242 1.00208 1.18494 0.90568 0.92803 0.80372 0.95410 1.22218 1.41199 1.10220 0.92914 0.95473 1.27006 0.92344 1.09480 0.91350 1.70975 1.45731 1.05910 1.32822 0.83679 0.79134 0.70856 0.76856 1.20784 1.19461 1.16791 1.48399 1.74532 1.07678 1.06855 1.73914 1.07912 1.28194 0.94178 1.24032 1.04767 0.98002 0.91750 1.18315 0.99722 0.93277 0.91022 1.21491 1.00081 0.93467 0.99125 1.21236 0.97943 1.01130 0.91623 1.21734 1.00425 0.94067 1.00211 1.18339 0.97675 0.91058 0.87194 1.84782 1.37464 1.76198 1.33623 1.21535 1.00986 1.01095 0.92172 0.93519 0.94142 0.92787 0.93357 0.79114 0.86459 0.86108 0.83116 0.83211 0.73040 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 9.24 71.98 0.67 -5.91 16 2 C 0.28 13.65 2.83 44.25 0.13 13.78 16 3 H 0.03 1.38 6.72 -2.39 -0.02 1.36 16 4 C -0.63 -35.28 8.96 25.60 0.23 -35.05 16 5 H 0.03 1.66 8.01 -2.91 -0.02 1.64 16 6 C 0.00 -0.02 5.19 84.66 0.44 0.42 16 7 N -0.92 -56.15 13.70 21.45 0.29 -55.86 16 8 Si 1.07 48.87 26.44 68.60 1.81 50.68 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.24 -9.87 6.14 99.48 0.61 -9.26 16 12 N -0.64 -27.85 6.10 -172.52 -1.05 -28.91 16 13 N -0.23 -9.03 10.61 -52.15 -0.55 -9.59 16 14 C 0.02 0.78 10.75 87.45 0.94 1.72 16 15 C -0.02 -0.57 5.87 -20.15 -0.12 -0.69 16 16 C -0.12 -3.16 9.58 22.56 0.22 -2.95 16 17 C -0.10 -2.02 10.02 22.22 0.22 -1.80 16 18 C -0.14 -2.62 9.98 22.43 0.22 -2.40 16 19 C 0.10 2.02 6.70 22.47 0.15 2.17 16 20 O -0.51 -8.26 13.50 -92.50 -1.25 -9.51 16 21 C -0.14 -3.09 9.73 22.65 0.22 -2.87 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.05 2.38 5.47 -2.39 -0.01 2.36 16 25 H 0.26 15.86 8.73 -92.71 -0.81 15.05 16 26 H 0.37 15.69 8.56 -213.32 -1.83 13.86 16 27 H 0.12 3.34 8.02 -2.91 -0.02 3.32 16 28 H 0.12 3.45 7.55 -2.91 -0.02 3.43 16 29 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.41 2.48 9.06 -74.06 -0.67 1.81 16 32 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -67.00 282.12 1.08 -65.92 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.49 Total: 20.83 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.31 Total: -33.58 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.31 Total: -94.35 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.25 Total: -9.51 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.81 Total: 50.68 kcal Total: -67.00 1.08 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.770 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds