Wall clock time and date at job start Mon Mar 30 2020 03:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21216 * 120.00130 * 2 1 4 4 C 1.47526 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39383 * 119.69686 * 179.72736 * 4 2 1 6 6 C 1.38777 * 119.20158 * 179.77121 * 5 4 2 7 7 C 1.38296 * 118.59768 * 0.49539 * 6 5 4 8 8 C 1.39564 * 119.32770 * 359.74691 * 7 6 5 9 9 N 1.38967 * 119.62138 * 179.97438 * 8 7 6 10 10 C 1.46496 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47102 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00257 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00048 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46996 * 120.00339 * 16 14 12 19 19 H 1.48496 * 109.47304 * 240.00279 * 16 14 12 20 20 N 1.32003 * 120.74972 * 0.02562 * 8 7 6 21 21 H 1.08999 * 109.47280 * 270.00038 * 1 2 3 22 22 H 1.08997 * 109.47027 * 29.99998 * 1 2 3 23 23 H 1.09000 * 109.47497 * 150.00232 * 1 2 3 24 24 H 1.07994 * 120.40287 * 359.97438 * 5 4 2 25 25 H 1.07997 * 120.69789 * 180.21969 * 6 5 4 26 26 H 1.07996 * 120.33442 * 179.77438 * 7 6 5 27 27 H 0.97005 * 119.99620 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47604 * 299.99989 * 10 9 8 29 29 H 1.09005 * 109.47101 * 60.00553 * 10 9 8 30 30 H 1.09002 * 109.47549 * 300.00564 * 11 10 9 31 31 H 1.09005 * 109.46713 * 60.00439 * 11 10 9 32 32 H 0.96996 * 120.00261 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2445 -1.2776 -0.0006 5 6 3.6383 -1.2703 -0.0063 6 6 4.3218 -2.4781 -0.0020 7 6 3.5910 -3.6522 -0.0025 8 6 2.1968 -3.5896 -0.0020 9 7 1.4565 -4.7657 -0.0031 10 6 2.1399 -6.0614 -0.0042 11 6 1.1019 -7.1855 -0.0046 12 6 1.8049 -8.5184 -0.0064 13 1 2.8841 -8.5598 -0.0067 14 6 1.0703 -9.6853 -0.0065 15 7 -0.2438 -9.6350 -0.0056 16 14 1.9417 -11.3376 -0.0094 17 1 3.4111 -11.1222 -0.0106 18 1 1.5551 -12.1032 1.2029 19 1 1.5518 -12.1007 -1.2221 20 7 1.5734 -2.4261 -0.0016 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 4.1799 -0.3360 -0.0108 25 1 5.4015 -2.5006 -0.0027 26 1 4.0942 -4.6078 -0.0029 27 1 0.4871 -4.7285 -0.0031 28 1 2.7640 -6.1424 -0.8942 29 1 2.7638 -6.1439 0.8859 30 1 0.4781 -7.1044 0.8856 31 1 0.4777 -7.1032 -0.8944 32 1 -0.7606 -10.4558 -0.0060 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865670910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:45 Heat of formation + Delta-G solvation = -9.471548 kcal Electronic energy + Delta-G solvation = -15257.739781 eV Core-core repulsion = 12604.042241 eV Total energy + Delta-G solvation = -2653.697540 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40067 -38.84562 -35.89906 -33.20154 -32.66894 -30.98913 -29.72657 -28.44745 -24.96317 -24.29551 -22.25294 -21.25415 -19.83482 -17.57167 -16.78240 -16.38270 -15.64520 -15.27637 -15.05747 -14.69257 -14.50061 -14.43826 -13.73671 -13.26417 -13.23402 -12.35403 -12.30461 -12.17442 -11.95393 -11.23856 -11.21920 -10.71965 -10.70413 -10.31895 -9.96189 -9.72126 -9.55156 -9.37524 -9.28778 -8.51800 -7.44430 -6.16750 -4.20861 0.60950 1.55650 2.34914 3.22700 3.30038 3.32992 3.42206 3.95141 4.03104 4.34869 4.68931 5.00028 5.16996 5.20495 5.25984 5.36237 5.43417 5.48378 5.63933 5.95415 6.00029 6.10672 6.10982 6.31430 6.54285 6.60090 7.11486 7.32087 7.48822 7.51786 7.80470 7.91635 8.15416 8.33130 8.85050 9.44569 10.94797 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.052846 B = 0.004249 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.710587 B = 6587.583118 C = 7091.544592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.416 3.584 3 O -0.457 6.457 4 C 0.087 3.913 5 C -0.189 4.189 6 C -0.046 4.046 7 C -0.208 4.208 8 C 0.405 3.595 9 N -0.712 5.712 10 C 0.126 3.874 11 C 0.013 3.987 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.518 5.518 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.405 0.595 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 13.865 0.040 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.293 3.707 3 O -0.331 6.331 4 C -0.049 4.049 5 C -0.213 4.213 6 C -0.072 4.072 7 C -0.234 4.234 8 C 0.165 3.835 9 N -0.342 5.342 10 C 0.004 3.996 11 C -0.025 4.025 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.239 5.239 21 H 0.115 0.885 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.154 0.846 25 H 0.154 0.846 26 H 0.157 0.843 27 H 0.240 0.760 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.935 14.133 0.037 14.671 hybrid contribution 0.881 -1.206 0.018 1.494 sum 4.816 12.927 0.055 13.795 Atomic orbital electron populations 1.22089 0.92798 1.04984 1.04803 1.22449 0.92087 0.86263 0.69912 1.90514 1.72568 1.33517 1.36474 1.21210 0.91565 0.92675 0.99482 1.21835 0.94240 0.99269 1.05966 1.21300 1.00233 0.91425 0.94213 1.21787 0.93245 1.00185 1.08178 1.18480 0.88578 0.86361 0.90065 1.45131 1.09124 1.02434 1.77500 1.21841 0.97313 0.80603 0.99892 1.19299 0.93787 0.91173 0.98193 1.21036 0.93171 0.90277 1.51854 0.92215 1.25003 0.94844 0.99509 0.94878 1.69961 1.04929 1.28110 1.49967 0.86457 0.79823 0.83562 0.77708 1.19606 1.20891 1.20884 1.67087 1.40224 0.96799 1.19840 0.88533 0.89958 0.88431 0.84635 0.84638 0.84316 0.75989 0.92776 0.92785 0.95743 0.95747 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 10.02 36.00 0.36 -1.56 16 2 C 0.42 5.45 7.24 -30.53 -0.22 5.23 16 3 O -0.46 -6.82 17.06 5.61 0.10 -6.72 16 4 C 0.09 1.25 6.72 -83.14 -0.56 0.69 16 5 C -0.19 -2.48 9.63 -38.96 -0.38 -2.85 16 6 C -0.05 -0.57 10.16 -39.36 -0.40 -0.97 16 7 C -0.21 -2.95 9.33 -39.07 -0.36 -3.32 16 8 C 0.41 6.50 7.65 -155.23 -1.19 5.31 16 9 N -0.71 -12.09 5.73 -60.41 -0.35 -12.43 16 10 C 0.13 2.37 4.83 -4.04 -0.02 2.35 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -13.82 9.11 -34.44 -0.31 -14.13 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 N -0.52 -8.02 9.47 -9.08 -0.09 -8.11 16 21 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.10 1.02 7.60 -51.93 -0.39 0.62 16 24 H 0.14 1.61 7.63 -52.49 -0.40 1.21 16 25 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 26 H 0.14 1.85 6.69 -52.49 -0.35 1.50 16 27 H 0.40 6.77 8.60 -40.82 -0.35 6.41 16 28 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 29 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -29.22 284.67 -7.62 -36.84 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.98 Total: 2.87 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.32 Total: -7.55 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.30 Total: -45.30 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.10 Total: -6.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.22 -7.62 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865670910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.368 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds