Wall clock time and date at job start Mon Mar 30 2020 03:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21216 * 120.00130 * 2 1 4 4 C 1.47526 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39383 * 119.69686 * 179.72736 * 4 2 1 6 6 C 1.38777 * 119.20158 * 179.77121 * 5 4 2 7 7 C 1.38296 * 118.59768 * 0.49539 * 6 5 4 8 8 C 1.39564 * 119.32770 * 359.74691 * 7 6 5 9 9 N 1.38967 * 119.62138 * 179.97438 * 8 7 6 10 10 C 1.46496 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47102 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00257 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00048 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46996 * 120.00339 * 16 14 12 19 19 H 1.48496 * 109.47304 * 240.00279 * 16 14 12 20 20 N 1.32003 * 120.74972 * 0.02562 * 8 7 6 21 21 H 1.08999 * 109.47280 * 270.00038 * 1 2 3 22 22 H 1.08997 * 109.47027 * 29.99998 * 1 2 3 23 23 H 1.09000 * 109.47497 * 150.00232 * 1 2 3 24 24 H 1.07994 * 120.40287 * 359.97438 * 5 4 2 25 25 H 1.07997 * 120.69789 * 180.21969 * 6 5 4 26 26 H 1.07996 * 120.33442 * 179.77438 * 7 6 5 27 27 H 0.97005 * 119.99620 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47604 * 299.99989 * 10 9 8 29 29 H 1.09005 * 109.47101 * 60.00553 * 10 9 8 30 30 H 1.09002 * 109.47549 * 300.00564 * 11 10 9 31 31 H 1.09005 * 109.46713 * 60.00439 * 11 10 9 32 32 H 0.96996 * 120.00261 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2445 -1.2776 -0.0006 5 6 3.6383 -1.2703 -0.0063 6 6 4.3218 -2.4781 -0.0020 7 6 3.5910 -3.6522 -0.0025 8 6 2.1968 -3.5896 -0.0020 9 7 1.4565 -4.7657 -0.0031 10 6 2.1399 -6.0614 -0.0042 11 6 1.1019 -7.1855 -0.0046 12 6 1.8049 -8.5184 -0.0064 13 1 2.8841 -8.5598 -0.0067 14 6 1.0703 -9.6853 -0.0065 15 7 -0.2438 -9.6350 -0.0056 16 14 1.9417 -11.3376 -0.0094 17 1 3.4111 -11.1222 -0.0106 18 1 1.5551 -12.1032 1.2029 19 1 1.5518 -12.1007 -1.2221 20 7 1.5734 -2.4261 -0.0016 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 4.1799 -0.3360 -0.0108 25 1 5.4015 -2.5006 -0.0027 26 1 4.0942 -4.6078 -0.0029 27 1 0.4871 -4.7285 -0.0031 28 1 2.7640 -6.1424 -0.8942 29 1 2.7638 -6.1439 0.8859 30 1 0.4781 -7.1044 0.8856 31 1 0.4777 -7.1032 -0.8944 32 1 -0.7606 -10.4558 -0.0060 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865670910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:45 Heat of formation + Delta-G solvation = -27.007649 kcal Electronic energy + Delta-G solvation = -15258.500203 eV Core-core repulsion = 12604.042241 eV Total energy + Delta-G solvation = -2654.457962 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50011 -39.94572 -37.30838 -35.06848 -33.74550 -32.45275 -30.80672 -29.83996 -26.60973 -25.52198 -23.46849 -22.85080 -20.96679 -18.92742 -18.21092 -17.89543 -16.71813 -16.50237 -16.37415 -16.15541 -15.82228 -15.78983 -15.04654 -14.57505 -14.30775 -14.17264 -13.36963 -13.09878 -13.07450 -12.97547 -12.79471 -12.46778 -12.40896 -11.63006 -11.38720 -11.30396 -11.21075 -10.75293 -10.55880 -10.37760 -8.68699 -8.22704 -6.33607 -0.46069 0.47854 1.29879 1.43162 1.44359 1.56672 2.14131 2.44397 2.91772 2.92110 3.13125 3.67233 3.96956 4.18421 4.21465 4.31826 4.49076 4.51945 4.53488 4.65197 4.68536 4.87664 5.04670 5.16206 5.27085 5.37498 5.54838 5.59489 5.74953 5.95283 6.16303 6.30825 6.65875 6.82374 7.10500 7.36583 8.89823 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.052846 B = 0.004249 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.710587 B = 6587.583118 C = 7091.544592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.418 3.582 3 O -0.479 6.479 4 C 0.067 3.933 5 C -0.186 4.186 6 C -0.035 4.035 7 C -0.215 4.215 8 C 0.385 3.615 9 N -0.721 5.721 10 C 0.149 3.851 11 C 0.019 3.981 12 C -0.540 4.540 13 H 0.070 0.930 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.527 5.527 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.150 0.850 25 H 0.174 0.826 26 H 0.148 0.852 27 H 0.402 0.598 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.000 1.000 31 H 0.000 1.000 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 14.263 0.078 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.296 3.704 3 O -0.354 6.354 4 C -0.069 4.069 5 C -0.210 4.210 6 C -0.060 4.060 7 C -0.241 4.241 8 C 0.146 3.854 9 N -0.351 5.351 10 C 0.026 3.974 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.088 0.912 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.249 5.249 21 H 0.129 0.871 22 H 0.117 0.883 23 H 0.112 0.888 24 H 0.168 0.832 25 H 0.191 0.809 26 H 0.166 0.834 27 H 0.237 0.763 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.746 14.567 0.074 15.659 hybrid contribution 0.341 -1.220 0.007 1.267 sum 6.087 13.347 0.081 14.670 Atomic orbital electron populations 1.22092 0.90632 1.05558 1.05820 1.22750 0.93229 0.85476 0.68920 1.90506 1.73180 1.33912 1.37786 1.21562 0.92525 0.92761 1.00018 1.22151 0.93973 1.00377 1.04522 1.21705 1.02018 0.90133 0.92146 1.21998 0.92528 1.01460 1.08077 1.18648 0.89366 0.86060 0.91288 1.44883 1.08941 1.02315 1.78993 1.21390 0.95591 0.79951 1.00498 1.19130 0.94324 0.92607 0.95835 1.21522 0.93892 0.91447 1.50979 0.91195 1.25935 0.95495 1.03578 0.94571 1.70092 1.06579 1.29137 1.51327 0.85372 0.79256 0.78703 0.77559 1.18150 1.20685 1.20679 1.67013 1.40817 0.97015 1.20028 0.87141 0.88330 0.88842 0.83210 0.80863 0.83439 0.76336 0.92098 0.92105 0.98121 0.98129 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 10.02 71.23 0.71 -2.78 16 2 C 0.42 10.46 7.24 28.14 0.20 10.67 16 3 O -0.48 -13.70 17.06 -2.83 -0.05 -13.74 16 4 C 0.07 1.85 6.72 41.69 0.28 2.13 16 5 C -0.19 -4.47 9.63 22.67 0.22 -4.25 16 6 C -0.03 -0.75 10.16 22.41 0.23 -0.52 16 7 C -0.22 -5.67 9.33 22.60 0.21 -5.46 16 8 C 0.39 12.04 7.65 133.30 1.02 13.06 16 9 N -0.72 -24.49 5.73 -345.03 -1.98 -26.47 16 10 C 0.15 5.55 4.83 86.38 0.42 5.97 16 11 C 0.02 0.90 5.09 29.85 0.15 1.05 16 12 C -0.54 -28.44 9.11 25.60 0.23 -28.21 16 13 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 16 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 N -0.53 -15.99 9.47 -182.64 -1.73 -17.72 16 21 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 23 H 0.09 1.87 7.60 -2.39 -0.02 1.85 16 24 H 0.15 3.16 7.63 -2.91 -0.02 3.14 16 25 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.15 3.58 6.69 -2.91 -0.02 3.56 16 27 H 0.40 13.82 8.60 -92.70 -0.80 13.02 16 28 H 0.06 2.17 7.92 -2.39 -0.02 2.15 16 29 H 0.06 2.17 7.92 -2.38 -0.02 2.15 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -62.45 284.67 3.03 -59.42 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.33 Total: 16.20 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.14 Total: -7.74 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.42 Total: -98.15 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -62.45 3.03 -59.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865670910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds