Wall clock time and date at job start Mon Mar 30 2020 03:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46507 * 119.99840 * 2 1 4 4 N 1.40095 * 120.00318 * 180.02562 * 2 1 3 5 5 C 1.29825 * 119.99732 * 359.97438 * 4 2 1 6 6 C 1.47341 * 119.99963 * 179.97438 * 5 4 2 7 7 C 1.39661 * 120.19597 * 180.27545 * 6 5 4 8 8 C 1.37903 * 119.90595 * 180.26107 * 7 6 5 9 9 C 1.38515 * 120.31441 * 359.71963 * 8 7 6 10 10 C 1.38138 * 120.39598 * 0.02562 * 9 8 7 11 11 C 1.38702 * 120.08654 * 359.97438 * 10 9 8 12 12 O 1.35629 * 120.15306 * 179.97438 * 11 10 9 13 13 C 1.34803 * 117.00229 * 5.59624 * 12 11 10 14 14 H 1.07998 * 119.99825 * 354.93302 * 13 12 11 15 15 C 1.38626 * 119.99804 * 174.93387 * 13 12 11 16 16 N 1.31571 * 119.99998 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47166 * 60.00199 * 17 15 13 19 19 H 1.48501 * 109.47255 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47407 * 300.00303 * 17 15 13 21 21 H 1.09000 * 109.46990 * 269.99747 * 1 2 3 22 22 H 1.08999 * 109.47269 * 29.99497 * 1 2 3 23 23 H 1.08996 * 109.46996 * 149.99964 * 1 2 3 24 24 H 1.08991 * 109.46955 * 270.00044 * 3 2 1 25 25 H 1.09004 * 109.46692 * 30.00203 * 3 2 1 26 26 H 1.08996 * 109.46511 * 149.99929 * 3 2 1 27 27 H 1.08003 * 120.00123 * 0.02562 * 5 4 2 28 28 H 1.07998 * 120.04465 * 0.02562 * 7 6 5 29 29 H 1.08002 * 119.84927 * 179.74400 * 8 7 6 30 30 H 1.07995 * 119.79980 * 180.02562 * 9 8 7 31 31 H 1.08004 * 119.95447 * 180.02562 * 10 9 8 32 32 H 0.96998 * 119.99614 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 7 2.1656 -1.2132 -0.0005 5 6 1.5165 -2.3375 -0.0005 6 6 2.2532 -3.6135 -0.0017 7 6 1.5591 -4.8254 -0.0075 8 6 2.2546 -6.0162 -0.0031 9 6 3.6398 -6.0168 0.0012 10 6 4.3392 -4.8256 0.0017 11 6 3.6564 -3.6183 -0.0027 12 8 4.3417 -2.4479 -0.0017 13 6 5.6830 -2.5240 -0.1135 14 1 6.1708 -3.4875 -0.1162 15 6 6.4360 -1.3655 -0.2250 16 7 5.8416 -0.1917 -0.2223 17 14 8.2946 -1.4708 -0.3792 18 1 8.6472 -2.2464 -1.5956 19 1 8.8610 -0.1021 -0.4840 20 1 8.8531 -2.1479 0.8186 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5137 23 1 -0.3633 -0.8900 -0.5138 24 1 2.3792 1.5834 -1.0276 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 0.4365 -2.3376 -0.0005 28 1 0.4791 -4.8300 -0.0116 29 1 1.7169 -6.9528 -0.0034 30 1 4.1761 -6.9542 0.0043 31 1 5.4192 -4.8344 0.0047 32 1 6.3686 0.6189 -0.2999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084508831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:06 Heat of formation + Delta-G solvation = 62.006788 kcal Electronic energy + Delta-G solvation = -16188.786244 eV Core-core repulsion = 13538.188238 eV Total energy + Delta-G solvation = -2650.598006 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90433 -36.69689 -36.12594 -32.66400 -32.08387 -29.66217 -28.56516 -27.58097 -25.27730 -24.25897 -21.43842 -21.41185 -18.86728 -17.81964 -16.61017 -16.37131 -15.07288 -14.52539 -14.39278 -14.18694 -13.99242 -13.48771 -13.36727 -12.49734 -12.31531 -12.09485 -11.85064 -11.59426 -11.48947 -11.40658 -10.91375 -10.71062 -10.61721 -10.58462 -10.38599 -9.35841 -8.80323 -8.74090 -8.26470 -7.35089 -6.52951 -6.33164 -3.89257 1.92069 2.50956 3.17932 3.19375 3.20572 3.48661 3.53232 4.03545 4.78182 5.22006 5.29478 5.36662 5.52360 5.61354 5.70796 5.80472 5.85079 5.93236 6.06175 6.27051 6.30254 6.40907 6.61044 6.77837 6.88471 6.98551 7.20920 7.38404 7.46692 7.51068 7.81053 7.93099 8.08237 9.09935 9.24317 9.86124 10.81574 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.011619 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.353878 B = 2409.245881 C = 4147.664612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.558 5.558 3 C 0.140 3.860 4 N -0.164 5.164 5 C 0.037 3.963 6 C -0.118 4.118 7 C -0.058 4.058 8 C -0.220 4.220 9 C -0.070 4.070 10 C -0.237 4.237 11 C 0.165 3.835 12 O -0.131 6.131 13 C -0.396 4.396 14 H 0.088 0.912 15 C 0.045 3.955 16 N -0.841 5.841 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.272 1.272 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 -2.228 0.233 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.375 5.375 3 C -0.003 4.003 4 N 0.030 4.970 5 C -0.172 4.172 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.239 4.239 9 C -0.090 4.090 10 C -0.257 4.257 11 C 0.107 3.893 12 O -0.030 6.030 13 C -0.473 4.473 14 H 0.105 0.895 15 C -0.161 4.161 16 N -0.474 5.474 17 Si 0.760 3.240 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.197 1.197 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.057 -1.036 0.235 6.149 hybrid contribution 0.016 -0.365 -0.123 0.385 sum -6.041 -1.400 0.113 6.202 Atomic orbital electron populations 1.21720 0.83719 1.01802 1.00081 1.50126 1.01319 1.02478 1.83573 1.21153 0.97455 0.81437 1.00250 1.75264 1.22836 0.91506 1.07346 1.23794 0.95865 0.91135 1.06426 1.17482 0.89771 0.90902 1.14042 1.20630 0.98098 0.90965 0.98172 1.20422 0.94067 0.96727 1.12708 1.20798 0.94039 0.96713 0.97431 1.21115 1.00536 0.92047 1.11987 1.19462 0.90820 0.86780 0.92255 1.84180 1.19629 1.23833 1.75350 1.21340 0.79282 0.94550 1.52114 0.89483 1.25203 0.99910 0.94337 0.96640 1.70101 1.35694 0.97167 1.44420 0.85893 0.81325 0.77759 0.79069 1.19683 1.20416 1.19676 0.94548 0.92131 0.92348 0.94717 0.93307 0.89764 0.88535 0.87022 0.87631 0.87680 0.85596 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.18 59.85 0.61 1.72 16 2 N -0.56 -11.29 4.26 -129.20 -0.55 -11.84 16 3 C 0.14 2.61 11.03 59.85 0.66 3.27 16 4 N -0.16 -3.93 9.36 32.14 0.30 -3.63 16 5 C 0.04 0.80 10.15 -14.70 -0.15 0.65 16 6 C -0.12 -2.62 5.88 -104.88 -0.62 -3.23 16 7 C -0.06 -1.06 9.79 -39.17 -0.38 -1.44 16 8 C -0.22 -3.87 10.03 -39.60 -0.40 -4.27 16 9 C -0.07 -1.33 10.03 -39.52 -0.40 -1.72 16 10 C -0.24 -5.31 9.16 -39.45 -0.36 -5.67 16 11 C 0.17 4.12 6.66 -38.63 -0.26 3.87 16 12 O -0.13 -3.75 7.64 0.50 0.00 -3.74 16 13 C -0.40 -11.12 9.48 30.88 0.29 -10.83 16 14 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 15 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 16 N -0.84 -24.00 13.67 55.48 0.76 -23.24 16 17 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 23 H 0.06 0.84 6.19 -51.93 -0.32 0.52 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 26 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 27 H 0.10 1.73 5.91 -52.48 -0.31 1.42 16 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 279.68 15.07 4.21 4.21 Total: -1.00 -31.52 279.68 -5.10 -36.62 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.71 Total: 2.57 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.10 Total: -16.53 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.51 Total: -38.71 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.00 Total: -3.74 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.52 -5.10 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084508831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.630 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds