Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99892 * 2 1 4 4 O 1.21280 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99810 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47286 * 59.99845 * 5 3 2 7 7 N 1.46494 * 109.47219 * 179.97438 * 5 3 2 8 8 C 1.36930 * 120.00190 * 275.00401 * 7 5 3 9 9 H 1.07997 * 119.99950 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00195 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99652 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00430 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46645 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47058 * 119.99439 * 12 10 8 15 15 H 1.48497 * 109.47129 * 240.00239 * 12 10 8 16 16 C 1.50703 * 109.46901 * 300.00441 * 5 3 2 17 17 C 1.38235 * 120.00292 * 100.00039 * 16 5 3 18 18 C 1.38230 * 119.99899 * 179.97438 * 17 16 5 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99503 * 279.97332 * 16 5 3 22 22 H 1.09000 * 109.47090 * 300.00046 * 1 2 3 23 23 H 1.08998 * 109.47286 * 59.99883 * 1 2 3 24 24 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99859 * 180.02562 * 2 1 3 26 26 H 0.97006 * 119.99706 * 94.99927 * 7 5 3 27 27 H 0.97003 * 119.99545 * 180.02562 * 11 10 8 28 28 H 1.08001 * 119.99730 * 359.97438 * 17 16 5 29 29 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 31 31 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.00455 * 0.02562 * 21 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6535 -0.8908 7 7 4.1343 2.5483 -0.0011 8 6 4.2646 3.2281 -1.1826 9 1 4.0077 2.7459 -2.1141 10 6 4.7278 4.5366 -1.1831 11 7 5.0414 5.1242 -0.0478 12 14 4.9062 5.4638 -2.7950 13 1 4.4917 4.5863 -3.9191 14 1 4.0460 6.6739 -2.7678 15 1 6.3233 5.8677 -2.9794 16 6 4.1487 0.4564 1.2295 17 6 4.5750 -0.8558 1.1439 18 6 5.0366 -1.5075 2.2721 19 6 5.0728 -0.8469 3.4858 20 6 4.6478 0.4657 3.5712 21 6 4.1840 1.1168 2.4434 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8401 -0.0004 26 1 4.3653 2.9814 0.8357 27 1 5.3647 6.0387 -0.0481 28 1 4.5474 -1.3717 0.1955 29 1 5.3693 -2.5328 2.2054 30 1 5.4293 -1.3574 4.3682 31 1 4.6756 0.9818 4.5195 32 1 3.8510 2.1420 2.5103 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038857885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = -19.317651 kcal Electronic energy + Delta-G solvation = -16257.165227 eV Core-core repulsion = 13603.040729 eV Total energy + Delta-G solvation = -2654.124499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02545 -39.55080 -36.50875 -35.41906 -33.88600 -31.80643 -31.29050 -28.74831 -26.80854 -24.90905 -23.32868 -22.66100 -21.05695 -19.47867 -18.26262 -17.66970 -17.08510 -16.43570 -16.33854 -15.68743 -15.54714 -15.20051 -14.88564 -14.47206 -14.14927 -13.92882 -13.48904 -13.19214 -13.01857 -12.96377 -12.86952 -12.16572 -12.10178 -11.79353 -11.73112 -11.45227 -10.79487 -10.00510 -9.75455 -9.57186 -9.10119 -7.98489 -5.28220 0.46465 0.56501 1.42630 1.46269 1.55232 1.83675 2.40472 2.55490 2.96294 3.39039 3.82593 3.91700 4.10007 4.18551 4.29053 4.37156 4.48787 4.56474 4.63289 4.72260 4.83861 4.93858 5.11723 5.22335 5.41790 5.60294 5.61908 5.67670 5.76947 6.17822 6.19416 6.71583 7.27893 7.48754 7.95534 8.19689 9.25203 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.008636 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.463577 B = 3241.383577 C = 4053.645020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.481 3.519 4 O -0.577 6.577 5 C 0.194 3.806 6 H 0.096 0.904 7 N -0.707 5.707 8 C -0.239 4.239 9 H 0.075 0.925 10 C -0.074 4.074 11 N -0.968 5.968 12 Si 0.977 3.023 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.285 1.285 16 C -0.090 4.090 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.130 4.130 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.117 0.883 25 H 0.414 0.586 26 H 0.377 0.623 27 H 0.252 0.748 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -19.021 4.342 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.380 5.380 3 C 0.265 3.735 4 O -0.455 6.455 5 C 0.081 3.919 6 H 0.114 0.886 7 N -0.345 5.345 8 C -0.370 4.370 9 H 0.093 0.907 10 C -0.266 4.266 11 N -0.618 5.618 12 Si 0.805 3.195 13 H -0.189 1.189 14 H -0.225 1.225 15 H -0.212 1.212 16 C -0.091 4.091 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.148 4.148 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.135 0.865 25 H 0.250 0.750 26 H 0.210 0.790 27 H 0.060 0.940 28 H 0.169 0.831 29 H 0.178 0.822 30 H 0.170 0.830 31 H 0.149 0.851 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.779 -18.202 4.139 18.872 hybrid contribution 0.054 1.285 -0.400 1.346 sum -2.725 -16.917 3.739 17.539 Atomic orbital electron populations 1.21598 0.79706 1.03957 1.00571 1.45894 1.07838 1.08462 1.75800 1.22933 0.92709 0.83530 0.74333 1.90638 1.70908 1.33839 1.50083 1.19382 0.88334 0.87164 0.97058 0.88630 1.42408 1.75549 1.09970 1.06564 1.19587 1.34970 0.95501 0.86986 0.90718 1.25618 1.02571 0.98034 1.00405 1.69842 1.52144 1.13389 1.26377 0.85032 0.76988 0.78211 0.79244 1.18895 1.22473 1.21194 1.19804 1.00727 0.95512 0.93074 1.21283 0.98625 0.92466 1.00693 1.21507 0.98468 1.01225 0.91748 1.21516 0.99055 0.93877 0.99355 1.21318 0.99087 0.96190 0.97827 1.20992 1.00773 0.99048 0.94027 0.94281 0.94056 0.86453 0.75028 0.78954 0.93951 0.83120 0.82176 0.83022 0.85088 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.14 10.70 127.77 1.37 3.51 16 2 N -0.73 -21.20 5.61 -484.52 -2.72 -23.92 16 3 C 0.48 20.25 7.17 87.66 0.63 20.88 16 4 O -0.58 -31.22 16.34 -3.03 -0.05 -31.27 16 5 C 0.19 8.09 2.90 43.50 0.13 8.22 16 6 H 0.10 3.63 7.94 -2.39 -0.02 3.62 16 7 N -0.71 -38.51 4.59 -330.10 -1.52 -40.03 16 8 C -0.24 -14.15 9.81 84.04 0.82 -13.33 16 9 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16 10 C -0.07 -4.51 5.50 84.86 0.47 -4.05 16 11 N -0.97 -62.50 13.06 21.65 0.28 -62.22 16 12 Si 0.98 48.72 29.55 68.60 2.03 50.75 16 13 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 16 C -0.09 -3.08 4.74 -19.87 -0.09 -3.18 16 17 C -0.11 -2.72 9.51 22.27 0.21 -2.51 16 18 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 19 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 20 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 21 C -0.13 -4.75 9.05 22.27 0.20 -4.55 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.41 8.75 8.55 -92.71 -0.79 7.96 16 26 H 0.38 22.19 6.07 -92.70 -0.56 21.63 16 27 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.15 2.68 8.04 -2.91 -0.02 2.66 16 29 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.09 3.76 6.92 -2.91 -0.02 3.74 16 Total: -1.00 -80.82 282.27 2.21 -78.61 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.22 Total: 30.72 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.40 Total: -2.65 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -3.95 Total: -126.16 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -80.82 2.21 -78.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038857885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.290 kcal (2) G-P(sol) polarization free energy of solvation -80.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds