Wall clock time and date at job start Mon Mar 30 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 C 1.50708 * 109.46830 * 179.97438 * 3 2 1 5 5 N 1.30350 * 125.89583 * 270.35119 * 4 3 2 6 6 N 1.39907 * 109.20293 * 180.14659 * 5 4 3 7 7 C 1.46491 * 125.76115 * 179.81242 * 6 5 4 8 8 C 1.50702 * 109.46957 * 269.69094 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.34929 * 108.47205 * 359.54878 * 6 5 4 17 17 N 1.38184 * 126.43958 * 180.26051 * 16 6 5 18 18 C 1.39229 * 107.12163 * 0.26221 * 16 6 5 19 19 C 1.43196 * 126.50290 * 180.02562 * 18 16 6 20 20 N 4.39052 * 118.12557 * 291.87376 * 2 1 3 21 21 H 1.08996 * 109.47101 * 299.99598 * 1 2 3 22 22 H 1.08996 * 109.47111 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47355 * 239.99926 * 2 1 3 25 25 H 1.09005 * 109.47241 * 119.99872 * 2 1 3 26 26 H 1.08996 * 109.46954 * 60.00312 * 3 2 1 27 27 H 1.08994 * 109.47476 * 299.99669 * 3 2 1 28 28 H 1.09004 * 109.47166 * 149.69360 * 7 6 5 29 29 H 1.08994 * 109.47507 * 29.69066 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 0.96996 * 120.00193 * 0.02562 * 17 16 6 32 32 H 0.97000 * 120.00063 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3108 1.4362 1.0569 6 7 5.6511 1.4420 0.6556 7 6 6.8122 1.4416 1.5488 8 6 7.2107 2.8624 1.8552 9 1 6.6544 3.6835 1.4277 10 6 8.2817 3.1140 2.6864 11 7 8.9589 2.1141 3.2073 12 14 8.7709 4.8750 3.0722 13 1 7.8561 5.8086 2.3674 14 1 8.6797 5.1045 4.5366 15 1 10.1654 5.1119 2.6200 16 6 5.6936 1.4421 -0.6930 17 7 6.8306 1.4419 -1.4784 18 6 4.3766 1.4425 -1.1446 19 6 3.9441 1.4422 -2.5097 20 7 3.5997 1.4426 -3.5933 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 7.6427 0.9276 1.0649 29 1 6.5575 0.9279 2.4757 30 1 9.7126 2.2912 3.7917 31 1 7.7070 1.4414 -1.0629 32 1 6.7522 1.4417 -2.4452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087503572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:39 Heat of formation + Delta-G solvation = 75.051323 kcal Electronic energy + Delta-G solvation = -15762.031344 eV Core-core repulsion = 13144.291742 eV Total energy + Delta-G solvation = -2617.739602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72363 -35.93399 -35.48935 -33.91656 -33.58852 -31.56299 -28.46786 -28.19808 -26.12298 -23.37210 -21.85858 -20.84401 -19.55834 -17.90791 -16.83933 -16.36033 -15.79906 -14.86555 -14.68182 -14.60744 -13.75211 -13.67020 -13.07316 -12.83407 -12.60386 -12.21166 -12.10506 -12.00146 -11.73715 -11.37232 -11.19345 -11.10818 -10.96066 -10.58604 -10.49270 -10.37298 -9.90355 -9.84988 -8.76257 -8.10496 -7.37822 -6.38002 -4.46174 2.37358 2.79383 3.04031 3.13645 3.20968 3.22775 3.29161 4.09712 4.10258 4.22578 4.68915 4.97397 5.12515 5.13939 5.24353 5.46864 5.60963 5.86783 5.89907 5.95248 5.99786 6.10527 6.34974 6.44879 6.63611 6.84344 7.05149 7.19824 7.56724 7.69607 7.74032 7.96813 8.19062 8.49161 8.62551 9.21823 10.69560 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.006392 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.940889 B = 4379.377708 C = 4875.167062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.038 4.038 4 C 0.129 3.871 5 N -0.286 5.286 6 N -0.349 5.349 7 C 0.258 3.742 8 C -0.541 4.541 9 H 0.067 0.933 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.429 3.571 17 N -0.838 5.838 18 C -0.292 4.292 19 C 0.314 3.686 20 N -0.484 5.484 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.269 0.731 31 H 0.412 0.588 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -2.807 -5.027 9.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.077 4.077 4 C -0.043 4.043 5 N -0.105 5.105 6 N -0.133 5.133 7 C 0.141 3.859 8 C -0.580 4.580 9 H 0.085 0.915 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.734 3.266 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.207 1.207 16 C 0.189 3.811 17 N -0.386 5.386 18 C -0.314 4.314 19 C 0.002 3.998 20 N -0.164 5.164 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.243 0.757 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.474 -2.859 -5.078 9.477 hybrid contribution 1.081 0.970 -0.298 1.483 sum -6.393 -1.888 -5.376 8.563 Atomic orbital electron populations 1.21767 0.95774 1.01483 1.01759 1.21457 0.95382 0.96011 1.02687 1.20015 0.86733 0.97791 1.03204 1.21852 0.95790 0.97964 0.88678 1.77115 0.86002 1.25957 1.21406 1.49058 1.06578 1.55697 1.02013 1.19718 0.77989 0.99156 0.89081 1.21369 1.14637 0.91285 1.30701 0.91494 1.24930 0.95630 0.98211 0.94891 1.69922 1.20079 1.31046 1.31661 0.86289 0.78344 0.83552 0.78456 1.19520 1.20546 1.20685 1.17942 0.87265 0.91657 0.84230 1.41451 1.05265 1.83781 1.08106 1.15113 0.90233 1.39270 0.86739 1.24613 0.93011 0.90887 0.91283 1.81223 1.08194 1.15606 1.11372 0.92579 0.92849 0.92839 0.91918 0.91355 0.89977 0.90554 0.93367 0.92223 0.92172 0.75686 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 3 C -0.04 -0.53 5.59 -27.88 -0.16 -0.69 16 4 C 0.13 2.29 6.51 -82.01 -0.53 1.75 16 5 N -0.29 -5.89 12.47 33.91 0.42 -5.46 16 6 N -0.35 -7.32 3.58 -61.17 -0.22 -7.54 16 7 C 0.26 5.97 5.97 -5.20 -0.03 5.94 16 8 C -0.54 -13.78 9.39 -34.44 -0.32 -14.11 16 9 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 12 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 C 0.43 7.85 8.01 -153.57 -1.23 6.62 16 17 N -0.84 -12.37 9.05 31.43 0.28 -12.09 16 18 C -0.29 -5.19 6.01 -106.40 -0.64 -5.83 16 19 C 0.31 5.41 15.22 -22.44 -0.34 5.07 16 20 N -0.48 -8.71 18.54 41.88 0.78 -7.93 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 28 H 0.05 1.08 7.47 -51.93 -0.39 0.70 16 29 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 31 H 0.41 5.92 8.05 -40.82 -0.33 5.59 16 32 H 0.41 5.06 8.68 -40.82 -0.35 4.71 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -27.99 291.08 -5.76 -33.75 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.99 Total: 5.01 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.14 Total: -2.35 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 2.00 Total: -55.85 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.99 -5.76 -33.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087503572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.805 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds