Wall clock time and date at job start Mon Mar 30 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 C 1.50708 * 109.46830 * 179.97438 * 3 2 1 5 5 N 1.30350 * 125.89583 * 270.35119 * 4 3 2 6 6 N 1.39907 * 109.20293 * 180.14659 * 5 4 3 7 7 C 1.46491 * 125.76115 * 179.81242 * 6 5 4 8 8 C 1.50702 * 109.46957 * 269.69094 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.34929 * 108.47205 * 359.54878 * 6 5 4 17 17 N 1.38184 * 126.43958 * 180.26051 * 16 6 5 18 18 C 1.39229 * 107.12163 * 0.26221 * 16 6 5 19 19 C 1.43196 * 126.50290 * 180.02562 * 18 16 6 20 20 N 4.39052 * 118.12557 * 291.87376 * 2 1 3 21 21 H 1.08996 * 109.47101 * 299.99598 * 1 2 3 22 22 H 1.08996 * 109.47111 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47355 * 239.99926 * 2 1 3 25 25 H 1.09005 * 109.47241 * 119.99872 * 2 1 3 26 26 H 1.08996 * 109.46954 * 60.00312 * 3 2 1 27 27 H 1.08994 * 109.47476 * 299.99669 * 3 2 1 28 28 H 1.09004 * 109.47166 * 149.69360 * 7 6 5 29 29 H 1.08994 * 109.47507 * 29.69066 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 0.96996 * 120.00193 * 0.02562 * 17 16 6 32 32 H 0.97000 * 120.00063 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3108 1.4362 1.0569 6 7 5.6511 1.4420 0.6556 7 6 6.8122 1.4416 1.5488 8 6 7.2107 2.8624 1.8552 9 1 6.6544 3.6835 1.4277 10 6 8.2817 3.1140 2.6864 11 7 8.9589 2.1141 3.2073 12 14 8.7709 4.8750 3.0722 13 1 7.8561 5.8086 2.3674 14 1 8.6797 5.1045 4.5366 15 1 10.1654 5.1119 2.6200 16 6 5.6936 1.4421 -0.6930 17 7 6.8306 1.4419 -1.4784 18 6 4.3766 1.4425 -1.1446 19 6 3.9441 1.4422 -2.5097 20 7 3.5997 1.4426 -3.5933 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 7.6427 0.9276 1.0649 29 1 6.5575 0.9279 2.4757 30 1 9.7126 2.2912 3.7917 31 1 7.7070 1.4414 -1.0629 32 1 6.7522 1.4417 -2.4452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087503572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:39 Heat of formation + Delta-G solvation = 58.863656 kcal Electronic energy + Delta-G solvation = -15762.733294 eV Core-core repulsion = 13144.291742 eV Total energy + Delta-G solvation = -2618.441552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19948 -37.35793 -36.76726 -35.42155 -35.11556 -33.16801 -29.84454 -29.71981 -27.57202 -25.10934 -23.01902 -22.21752 -20.92911 -19.36187 -18.75668 -17.81191 -17.13671 -16.56110 -16.19379 -15.76752 -15.18018 -14.87119 -14.56556 -14.15712 -14.07004 -13.77405 -13.61859 -13.43807 -12.99400 -12.88173 -12.69939 -12.45747 -12.26980 -12.20487 -11.88504 -11.63259 -11.55235 -11.28805 -10.71679 -9.67459 -8.79646 -8.32857 -6.48197 0.92885 1.34360 1.38980 1.43591 1.50737 1.58216 1.79852 2.35655 2.69950 2.77524 2.99452 3.29128 3.87446 3.99460 4.26073 4.31248 4.44059 4.64625 4.76104 4.87475 4.92707 5.06837 5.08733 5.25875 5.40672 5.49315 5.52405 5.61025 5.78244 5.82122 6.37580 6.50500 6.67466 6.79550 7.07677 7.23594 8.74095 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.006392 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.940889 B = 4379.377708 C = 4875.167062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.038 4.038 4 C 0.139 3.861 5 N -0.324 5.324 6 N -0.370 5.370 7 C 0.273 3.727 8 C -0.552 4.552 9 H 0.052 0.948 10 C 0.027 3.973 11 N -0.916 5.916 12 Si 0.967 3.033 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.271 1.271 16 C 0.429 3.571 17 N -0.822 5.822 18 C -0.297 4.297 19 C 0.328 3.672 20 N -0.492 5.492 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.273 0.727 31 H 0.416 0.584 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 -2.288 -5.817 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.077 4.077 4 C -0.033 4.033 5 N -0.143 5.143 6 N -0.155 5.155 7 C 0.155 3.845 8 C -0.590 4.590 9 H 0.071 0.929 10 C -0.174 4.174 11 N -0.554 5.554 12 Si 0.791 3.209 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.196 1.196 16 C 0.189 3.811 17 N -0.371 5.371 18 C -0.318 4.318 19 C 0.016 3.984 20 N -0.171 5.171 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.062 -2.348 -5.909 10.268 hybrid contribution 1.230 0.775 -0.106 1.458 sum -6.832 -1.572 -6.015 9.237 Atomic orbital electron populations 1.21733 0.93644 1.02446 1.02472 1.21411 0.97158 0.94582 1.01927 1.20204 0.84178 0.99164 1.04185 1.22483 0.97348 0.95496 0.87925 1.77084 0.86061 1.28216 1.22938 1.48768 1.06344 1.57721 1.02660 1.19286 0.78891 0.97742 0.88611 1.21488 1.14670 0.91920 1.30916 0.92935 1.25632 0.95546 1.01647 0.94619 1.69993 1.20528 1.32723 1.32141 0.85373 0.78231 0.79186 0.78072 1.19862 1.20354 1.19588 1.18179 0.88461 0.90884 0.83577 1.41467 1.04535 1.82462 1.08614 1.15135 0.90061 1.39613 0.87016 1.24336 0.92690 0.90518 0.90825 1.81247 1.08478 1.15947 1.11473 0.91805 0.92202 0.91802 0.92576 0.92256 0.89110 0.89376 0.92954 0.94900 0.91817 0.75286 0.74297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.11 -2.60 5.92 30.60 0.18 -2.42 16 3 C -0.04 -1.00 5.59 29.85 0.17 -0.84 16 4 C 0.14 4.85 6.51 43.56 0.28 5.13 16 5 N -0.32 -13.43 12.47 -46.64 -0.58 -14.01 16 6 N -0.37 -15.65 3.58 -347.45 -1.24 -16.90 16 7 C 0.27 12.90 5.97 85.64 0.51 13.41 16 8 C -0.55 -28.32 9.39 25.60 0.24 -28.08 16 9 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 10 C 0.03 1.38 5.46 84.66 0.46 1.84 16 11 N -0.92 -48.57 13.29 21.45 0.28 -48.29 16 12 Si 0.97 40.84 29.54 68.60 2.03 42.87 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 16 C 0.43 15.46 8.01 132.59 1.06 16.52 16 17 N -0.82 -23.36 9.05 -54.46 -0.49 -23.85 16 18 C -0.30 -10.24 6.01 -21.01 -0.13 -10.36 16 19 C 0.33 10.74 15.22 88.32 1.34 12.08 16 20 N -0.49 -16.73 18.54 19.02 0.35 -16.38 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 2.12 7.98 -2.39 -0.02 2.10 16 28 H 0.05 2.39 7.47 -2.38 -0.02 2.37 16 29 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 31 H 0.42 11.56 8.05 -92.71 -0.75 10.81 16 32 H 0.42 9.73 8.68 -92.71 -0.80 8.93 16 Total: -1.00 -58.45 291.08 4.79 -53.66 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.40 Total: 17.46 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 4.84 Total: 5.43 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -1.68 Total: -119.43 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -58.45 4.79 -53.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087503572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.526 kcal (2) G-P(sol) polarization free energy of solvation -58.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds