Wall clock time and date at job start Mon Mar 30 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47143 * 110.99812 * 2 1 4 4 C 1.52961 * 108.63381 * 165.44726 * 3 2 1 5 5 C 1.50578 * 109.84559 * 50.41613 * 4 3 2 6 6 N 1.32719 * 119.17160 * 162.96995 * 5 4 3 7 7 C 1.32629 * 121.29531 * 179.84723 * 6 5 4 8 8 N 1.38396 * 119.07822 * 179.97438 * 7 6 5 9 9 N 1.32112 * 121.84822 * 359.94846 * 7 6 5 10 10 C 1.33954 * 120.39501 * 0.05451 * 9 7 6 11 11 C 1.41544 * 120.60754 * 180.13907 * 10 9 7 12 12 H 1.07994 * 119.99585 * 180.02562 * 11 10 9 13 13 C 1.40104 * 120.00042 * 0.02562 * 11 10 9 14 14 N 1.30670 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00008 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47247 * 89.99545 * 15 13 11 17 17 H 1.48504 * 109.47073 * 209.99973 * 15 13 11 18 18 H 1.48505 * 109.46835 * 329.99681 * 15 13 11 19 19 C 1.37714 * 121.60879 * 342.94645 * 5 4 3 20 20 C 1.46732 * 110.99598 * 236.90901 * 2 1 3 21 21 H 1.08998 * 109.47182 * 63.95805 * 1 2 3 22 22 H 1.09006 * 109.46989 * 183.95382 * 1 2 3 23 23 H 1.09002 * 109.47364 * 303.95555 * 1 2 3 24 24 H 1.08998 * 109.61288 * 45.70044 * 3 2 1 25 25 H 1.09005 * 109.75282 * 285.27493 * 3 2 1 26 26 H 1.08999 * 109.40453 * 290.30934 * 4 3 2 27 27 H 1.08994 * 109.41116 * 170.53148 * 4 3 2 28 28 H 0.96998 * 119.99822 * 179.97438 * 8 7 6 29 29 H 0.96998 * 119.99452 * 359.97438 * 8 7 6 30 30 H 0.96999 * 120.00002 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.31863 * 55.36932 * 20 2 1 32 32 H 1.08991 * 109.32664 * 295.92212 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3737 0.0000 4 6 3.4812 1.3273 0.3642 5 6 4.1876 0.3150 -0.4982 6 7 5.5111 0.3542 -0.5895 7 6 6.1764 -0.5186 -1.3343 8 7 7.5564 -0.4353 -1.3970 9 7 5.5587 -1.4655 -2.0178 10 6 4.2239 -1.5700 -1.9768 11 6 3.5577 -2.5846 -2.7049 12 1 2.4811 -2.6596 -2.6650 13 6 4.2950 -3.4916 -3.4774 14 7 5.5976 -3.4006 -3.5260 15 14 3.4158 -4.8302 -4.4389 16 1 3.0827 -4.3274 -5.7959 17 1 4.2991 -6.0184 -4.5542 18 1 2.1665 -5.2089 -3.7309 19 6 3.4940 -0.6502 -1.1937 20 6 1.9948 -0.7479 -1.1477 21 1 -0.3633 0.4512 -0.9233 22 1 -0.3633 -1.0253 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 1.4579 1.9722 0.7348 25 1 1.8760 1.8145 -0.9897 26 1 3.5884 1.0479 1.4123 27 1 3.9240 2.3104 0.2054 28 1 8.0563 -1.0669 -1.9373 29 1 8.0236 0.2547 -0.9005 30 1 6.1081 -4.0283 -4.0610 31 1 1.5782 -0.3370 -2.0673 32 1 1.7042 -1.7947 -1.0598 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107291661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:47 Heat of formation + Delta-G solvation = 28.317327 kcal Electronic energy + Delta-G solvation = -16579.402450 eV Core-core repulsion = 13959.636310 eV Total energy + Delta-G solvation = -2619.766140 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17057 -38.67410 -36.19863 -35.05107 -33.75393 -31.71447 -31.32044 -28.58349 -26.89479 -24.99977 -23.78577 -22.82701 -20.88952 -19.58451 -18.18485 -17.40415 -16.68134 -16.39770 -16.15013 -15.87590 -15.18782 -15.15315 -14.64179 -14.44631 -14.07407 -13.43277 -13.25154 -12.98750 -12.92924 -12.78706 -12.53378 -12.15092 -12.06991 -11.78457 -11.57395 -10.84127 -10.79192 -10.33757 -9.26806 -9.21225 -8.57295 -8.27926 -6.70236 1.02841 1.11384 1.41206 1.54915 1.60657 2.21387 2.88249 2.91783 3.13600 3.86700 3.93355 4.14204 4.30645 4.44394 4.57510 4.66223 4.71345 4.74807 4.87873 4.90645 5.02357 5.06355 5.07866 5.16714 5.25186 5.63293 5.89498 6.09807 6.17757 6.30454 6.49064 6.70267 6.98389 7.00984 7.36252 8.36179 8.49645 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.010900 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.255862 B = 2568.108270 C = 3859.256597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.063 3.937 4 C -0.050 4.050 5 C 0.187 3.813 6 N -0.673 5.673 7 C 0.531 3.469 8 N -0.827 5.827 9 N -0.595 5.595 10 C 0.272 3.728 11 C -0.447 4.447 12 H 0.098 0.902 13 C 0.025 3.975 14 N -0.743 5.743 15 Si 0.988 3.012 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.252 1.252 19 C -0.343 4.343 20 C 0.152 3.848 21 H 0.027 0.973 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.028 0.972 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.280 0.720 31 H 0.019 0.981 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 3.781 2.641 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.065 4.065 4 C -0.088 4.088 5 C 0.048 3.952 6 N -0.405 5.405 7 C 0.170 3.830 8 N -0.379 5.379 9 N -0.325 5.325 10 C 0.140 3.860 11 C -0.481 4.481 12 H 0.116 0.884 13 C -0.198 4.198 14 N -0.365 5.365 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.175 1.175 19 C -0.353 4.353 20 C 0.024 3.976 21 H 0.045 0.955 22 H 0.087 0.913 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.046 0.954 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.237 0.763 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.959 3.540 2.977 6.781 hybrid contribution -0.476 -0.319 -1.262 1.386 sum -5.436 3.220 1.715 6.546 Atomic orbital electron populations 1.22438 0.85650 1.02818 1.01252 1.62282 1.09051 1.14098 1.42322 1.22133 0.94295 0.89519 1.00540 1.20332 0.93874 0.96501 0.98135 1.20866 0.88608 0.93351 0.92334 1.67576 1.09542 1.32545 1.30865 1.19959 0.88112 0.87223 0.87724 1.41329 1.01016 1.38928 1.56582 1.68932 1.10502 1.24471 1.28606 1.18911 0.87374 0.90821 0.88874 1.20019 0.95314 1.09655 1.23086 0.88422 1.27071 0.95470 1.00456 0.96841 1.70192 1.08037 1.30722 1.27565 0.85126 0.79169 0.76505 0.78470 1.18685 1.19291 1.17528 1.20731 0.97049 1.05346 1.12187 1.20078 0.90142 0.97527 0.89895 0.95464 0.91273 0.89178 0.87091 0.95386 0.89812 0.89486 0.76272 0.76186 0.90887 0.96360 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.57 127.69 1.22 1.88 16 2 N -0.55 -19.01 4.94 -927.68 -4.59 -23.60 16 3 C 0.06 1.95 5.56 86.24 0.48 2.43 16 4 C -0.05 -1.82 6.22 29.80 0.19 -1.63 16 5 C 0.19 9.01 6.67 42.26 0.28 9.29 16 6 N -0.67 -34.23 10.35 -186.73 -1.93 -36.17 16 7 C 0.53 27.94 8.66 261.60 2.27 30.20 16 8 N -0.83 -34.63 9.07 -59.90 -0.54 -35.18 16 9 N -0.60 -34.44 8.07 -191.40 -1.54 -35.98 16 10 C 0.27 15.49 6.58 40.35 0.27 15.76 16 11 C -0.45 -23.99 8.69 23.54 0.20 -23.79 16 12 H 0.10 4.84 6.31 -2.91 -0.02 4.82 16 13 C 0.03 1.27 5.50 85.32 0.47 1.74 16 14 N -0.74 -39.60 11.52 21.85 0.25 -39.34 16 15 Si 0.99 37.24 29.56 68.60 2.03 39.27 16 16 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 18 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 19 C -0.34 -17.44 5.85 -19.40 -0.11 -17.56 16 20 C 0.15 6.43 4.45 85.47 0.38 6.81 16 21 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 24 H 0.11 2.54 7.94 -2.39 -0.02 2.52 16 25 H 0.03 0.89 8.06 -2.38 -0.02 0.88 16 26 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.41 16.12 8.94 -92.71 -0.83 15.29 16 29 H 0.41 14.39 8.94 -92.71 -0.83 13.56 16 30 H 0.28 13.41 8.29 -92.71 -0.77 12.65 16 31 H 0.02 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.06 2.80 7.00 -2.39 -0.02 2.78 16 Total: -1.00 -67.79 266.79 -1.18 -68.97 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.50 Total: 36.88 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 5.64 Total: 25.14 kcal Atomic # 7 Polarization: -161.91 SS G_CDS: -8.35 Total: -170.27 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -67.79 -1.18 -68.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.290 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds