Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99711 * 2 1 4 4 H 1.48500 * 109.47333 * 272.92976 * 3 2 1 5 5 H 1.48504 * 109.46925 * 32.92619 * 3 2 1 6 6 H 1.48495 * 109.47019 * 152.92344 * 3 2 1 7 7 C 1.38804 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99941 * 339.36393 * 7 2 1 9 9 N 1.36938 * 120.00638 * 159.36544 * 7 2 1 10 10 C 1.46920 * 120.63399 * 152.59862 * 9 7 2 11 11 C 1.53197 * 108.77761 * 126.39277 * 10 9 7 12 12 C 1.53043 * 109.31024 * 54.63031 * 11 10 9 13 13 C 1.53036 * 109.54128 * 298.63897 * 12 11 10 14 14 H 1.09008 * 109.49495 * 301.38190 * 13 12 11 15 15 N 1.46897 * 109.49887 * 181.32122 * 13 12 11 16 16 C 1.46891 * 111.00426 * 155.06374 * 15 13 12 17 17 C 1.52997 * 109.47454 * 179.97438 * 16 15 13 18 18 F 1.39900 * 109.47412 * 300.00117 * 17 16 15 19 19 F 1.39909 * 109.47128 * 60.00133 * 17 16 15 20 20 C 1.46941 * 120.59886 * 332.57658 * 9 7 2 21 21 H 0.97003 * 120.00662 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.58666 * 6.60163 * 10 9 7 23 23 H 1.09000 * 109.70122 * 246.24628 * 10 9 7 24 24 H 1.08998 * 109.49510 * 294.68206 * 11 10 9 25 25 H 1.08999 * 109.49903 * 174.58697 * 11 10 9 26 26 H 1.09005 * 109.45362 * 178.61412 * 12 11 10 27 27 H 1.09003 * 109.45913 * 58.66132 * 12 11 10 28 28 H 1.00908 * 111.00251 * 31.10305 * 15 13 12 29 29 H 1.08998 * 109.47350 * 299.99549 * 16 15 13 30 30 H 1.09004 * 109.47531 * 59.99611 * 16 15 13 31 31 H 1.09005 * 109.47608 * 179.97438 * 17 16 15 32 32 H 1.09000 * 109.55952 * 113.80493 * 20 9 7 33 33 H 1.08996 * 109.61447 * 353.38112 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4356 2.0823 -1.3982 5 1 1.4798 2.6340 0.7610 6 1 3.5772 1.4232 0.6373 7 6 2.0103 -1.2020 -0.0005 8 1 1.5224 -2.1075 0.3287 9 7 3.3138 -1.2399 -0.4185 10 6 4.2351 -2.2627 0.0949 11 6 4.8754 -2.9899 -1.0918 12 6 5.5291 -1.9643 -2.0209 13 6 4.4624 -1.0079 -2.5588 14 1 3.7001 -1.5760 -3.0921 15 7 5.0857 -0.0436 -3.4751 16 6 4.1053 0.4793 -4.4359 17 6 4.7899 1.4784 -5.3706 18 9 5.3159 2.5350 -4.6194 19 9 5.8239 0.8375 -6.0616 20 6 3.8168 -0.2582 -1.3893 21 1 -0.4851 0.8400 -0.0004 22 1 3.6841 -2.9768 0.7069 23 1 5.0118 -1.7894 0.6956 24 1 4.1089 -3.5393 -1.6383 25 1 5.6318 -3.6850 -0.7274 26 1 6.0067 -2.4812 -2.8533 27 1 6.2783 -1.3984 -1.4672 28 1 5.8747 -0.4549 -3.9511 29 1 3.6952 -0.3439 -5.0210 30 1 3.2998 0.9789 -3.8976 31 1 4.0625 1.8661 -6.0839 32 1 4.5588 0.3810 -0.9108 33 1 2.9902 0.3498 -1.7566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108049732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = -106.746348 kcal Electronic energy + Delta-G solvation = -17429.664181 eV Core-core repulsion = 14353.352055 eV Total energy + Delta-G solvation = -3076.312127 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.84398 -47.86604 -39.86816 -36.71538 -34.69586 -32.67059 -31.50356 -28.46131 -27.17564 -24.43789 -23.38399 -22.65539 -20.98867 -18.86963 -18.40576 -18.26941 -17.65112 -17.20951 -16.26269 -15.86543 -15.61863 -15.44555 -14.98908 -14.83523 -14.49119 -14.26110 -13.99485 -13.86766 -13.77465 -13.36521 -13.19623 -12.61737 -12.48501 -12.33698 -11.94305 -11.75477 -11.67113 -11.41276 -11.22044 -10.70087 -9.60699 -8.93703 -8.20414 -5.51413 1.27344 1.38018 1.47426 2.37393 2.72699 2.94044 3.11598 3.37402 3.43522 3.61337 3.85839 3.98993 4.10104 4.22600 4.36771 4.48304 4.53099 4.58906 4.66201 4.83060 4.95461 4.98109 5.07238 5.16751 5.20354 5.47915 5.75107 5.91006 6.10067 6.35648 6.89979 7.60261 8.01412 8.99257 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.009755 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.654355 B = 2869.641483 C = 3722.368070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.029 4.029 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.310 1.310 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.057 0.943 9 N -0.622 5.622 10 C 0.137 3.863 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.082 3.918 14 H 0.040 0.960 15 N -0.690 5.690 16 C 0.001 3.999 17 C 0.268 3.732 18 F -0.216 7.216 19 F -0.213 7.213 20 C 0.140 3.860 21 H 0.262 0.738 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.354 0.646 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.025 0.975 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 -0.956 -11.295 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.224 4.224 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.239 1.239 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.074 0.926 9 N -0.347 5.347 10 C 0.012 3.988 11 C -0.162 4.162 12 C -0.144 4.144 13 C -0.029 4.029 14 H 0.058 0.942 15 N -0.324 5.324 16 C -0.129 4.129 17 C 0.214 3.786 18 F -0.198 7.198 19 F -0.195 7.195 20 C 0.015 3.985 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.173 0.827 32 H 0.043 0.957 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.090 -0.350 -10.844 16.245 hybrid contribution -0.291 0.281 -0.202 0.452 sum 11.799 -0.069 -11.047 16.163 Atomic orbital electron populations 1.69946 1.07137 1.27161 1.55673 1.25814 0.95757 1.00464 1.00380 0.85985 0.78411 0.80831 0.77478 1.20393 1.23892 1.19511 1.18905 0.86751 0.93617 1.38529 0.92569 1.44520 1.08000 1.35009 1.47148 1.21197 0.91977 0.90496 0.95119 1.21896 0.99923 0.97636 0.96735 1.21570 0.96674 0.96292 0.99833 1.21889 0.96165 0.91863 0.92949 0.94200 1.60248 1.10376 1.40817 1.20932 1.23206 0.96017 0.98936 0.94785 1.22334 0.85120 0.82081 0.89016 1.92966 1.88819 1.59022 1.78974 1.92943 1.63402 1.82781 1.80369 1.21214 0.95964 0.91523 0.89822 0.92883 0.92489 0.94973 0.92807 0.88781 0.89835 0.91376 0.82522 0.90194 0.89806 0.82744 0.95721 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.97 21.65 0.30 -59.79 16 2 C -0.03 -1.72 5.23 84.86 0.44 -1.28 16 3 Si 0.94 48.47 24.34 68.60 1.67 50.14 16 4 H -0.28 -13.57 6.62 99.48 0.66 -12.92 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.27 -13.71 6.63 99.48 0.66 -13.05 16 7 C -0.25 -14.25 10.03 84.03 0.84 -13.40 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 N -0.62 -29.71 2.77 -699.08 -1.94 -31.65 16 10 C 0.14 5.21 6.52 86.37 0.56 5.78 16 11 C -0.12 -3.58 6.08 30.67 0.19 -3.39 16 12 C -0.11 -2.92 5.17 30.62 0.16 -2.76 16 13 C 0.08 2.77 2.64 44.99 0.12 2.89 16 14 H 0.04 1.42 7.80 -2.38 -0.02 1.40 16 15 N -0.69 -20.10 6.23 -491.20 -3.06 -23.17 16 16 C 0.00 0.02 5.75 86.30 0.50 0.52 16 17 C 0.27 5.70 5.60 71.98 0.40 6.11 16 18 F -0.22 -6.11 17.26 44.97 0.78 -5.34 16 19 F -0.21 -4.78 16.81 44.97 0.76 -4.02 16 20 C 0.14 6.16 3.67 86.36 0.32 6.48 16 21 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 22 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 1.81 8.10 -2.38 -0.02 1.79 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.35 8.72 7.86 -89.69 -0.70 8.01 16 29 H 0.08 1.74 8.06 -2.39 -0.02 1.72 16 30 H 0.08 2.53 7.56 -2.38 -0.02 2.51 16 31 H 0.16 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.02 1.13 7.07 -2.39 -0.02 1.11 16 33 H 0.04 2.09 3.98 -2.39 -0.01 2.08 16 Total: -1.00 -68.60 267.87 2.34 -66.26 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.31 Total: 6.63 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 3.53 Total: 0.93 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.70 Total: -114.61 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.53 Total: -9.36 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.67 Total: 50.14 kcal Total: -68.60 2.34 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108049732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.490 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds