Wall clock time and date at job start Mon Mar 30 2020 03:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99678 * 2 1 4 4 H 1.48501 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47620 * 300.00033 * 3 2 1 6 6 H 1.48496 * 109.47596 * 60.00502 * 3 2 1 7 7 C 1.37872 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99576 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00340 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.39361 * 120.00205 * 270.27759 * 10 9 7 12 12 C 1.39585 * 120.07505 * 189.06392 * 11 10 9 13 13 C 1.38357 * 117.96014 * 179.97438 * 12 11 10 14 14 C 1.39584 * 117.96763 * 359.97438 * 13 12 11 15 15 N 1.39352 * 120.07681 * 180.02562 * 14 13 12 16 16 N 1.32272 * 119.84688 * 0.02562 * 14 13 12 17 17 N 1.28349 * 122.19028 * 359.70318 * 16 14 13 18 18 C 1.46502 * 119.99748 * 89.99883 * 10 9 7 19 19 C 1.52997 * 117.50048 * 2.77669 * 18 10 9 20 20 C 1.53000 * 117.50091 * 294.11280 * 18 10 9 21 21 H 0.96998 * 119.99877 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47026 * 60.00343 * 9 7 2 23 23 H 1.08998 * 109.46992 * 299.99802 * 9 7 2 24 24 H 1.07998 * 121.01559 * 0.02562 * 12 11 10 25 25 H 1.07998 * 121.01566 * 179.97438 * 13 12 11 26 26 H 0.97003 * 119.99786 * 0.02562 * 15 14 13 27 27 H 0.96999 * 120.00477 * 179.97438 * 15 14 13 28 28 H 1.09003 * 115.54681 * 148.44553 * 18 10 9 29 29 H 1.09000 * 117.50149 * 0.02562 * 19 18 10 30 30 H 1.08996 * 117.49719 * 145.02172 * 19 18 10 31 31 H 1.08996 * 117.49925 * 214.98182 * 20 18 10 32 32 H 1.08999 * 117.49459 * 0.02562 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6603 -4.1385 -1.2074 12 6 3.4143 -5.3132 -1.2176 13 6 3.8453 -5.7967 -2.4402 14 6 3.4988 -5.0799 -3.5867 15 7 3.9093 -5.5275 -4.8409 16 7 2.7799 -3.9748 -3.4799 17 7 2.3756 -3.5289 -2.3463 18 6 2.6791 -4.1694 1.2682 19 6 2.0958 -3.5883 2.5578 20 6 3.5381 -3.2680 2.1573 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.6531 -5.8292 -0.2994 25 1 4.4320 -6.7011 -2.5055 26 1 4.4362 -6.3383 -4.9179 27 1 3.6676 -5.0288 -5.6370 28 1 2.9122 -5.2341 1.2564 29 1 1.3576 -2.7920 2.4622 30 1 1.9456 -4.2706 3.3944 31 1 4.3361 -3.7397 2.7306 32 1 3.7487 -2.2606 1.7983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159910695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:21 Heat of formation + Delta-G solvation = 105.138493 kcal Electronic energy + Delta-G solvation = -16249.067726 eV Core-core repulsion = 13632.632802 eV Total energy + Delta-G solvation = -2616.434924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24903 -37.72885 -34.92803 -33.36771 -32.73894 -31.58486 -28.65406 -26.93598 -24.10457 -23.04690 -22.43280 -21.67058 -19.72278 -17.47374 -17.20501 -16.69817 -16.34661 -15.21089 -14.74627 -14.46095 -14.24429 -14.11456 -13.32162 -12.79720 -12.62917 -11.85170 -11.65613 -11.31922 -10.91098 -10.80250 -10.71649 -10.43647 -10.32560 -9.98256 -9.81849 -9.67899 -9.38204 -8.70463 -8.36682 -8.33098 -6.52411 -5.91961 -3.98885 1.44692 2.06962 3.34802 3.42838 3.46092 3.59248 3.98852 4.28460 4.50573 4.56281 5.05014 5.08143 5.24465 5.36756 5.38500 5.43300 5.57431 5.57986 5.97138 6.13752 6.17884 6.31210 6.41675 6.66542 6.82116 7.16000 7.50803 7.57472 7.87422 7.94292 8.19045 8.32024 8.34939 9.04466 9.64534 9.77616 11.11757 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.008719 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.833899 B = 3210.710772 C = 4039.306690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.253 3.747 10 N -0.561 5.561 11 C 0.319 3.681 12 C -0.151 4.151 13 C -0.142 4.142 14 C 0.266 3.734 15 N -0.860 5.860 16 N -0.268 5.268 17 N -0.245 5.245 18 C 0.086 3.914 19 C -0.179 4.179 20 C -0.196 4.196 21 H 0.261 0.739 22 H 0.044 0.956 23 H 0.035 0.965 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.399 0.601 27 H 0.401 0.599 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.534 -12.679 -0.648 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.134 3.866 10 N -0.273 5.273 11 C 0.075 3.925 12 C -0.185 4.185 13 C -0.176 4.176 14 C 0.021 3.979 15 N -0.409 5.409 16 N -0.117 5.117 17 N -0.095 5.095 18 C -0.020 4.020 19 C -0.216 4.216 20 C -0.236 4.236 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.156 0.844 25 H 0.152 0.848 26 H 0.228 0.772 27 H 0.229 0.771 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.505 -11.170 -1.174 12.980 hybrid contribution 1.396 -0.359 0.405 1.497 sum 7.901 -11.529 -0.769 13.998 Atomic orbital electron populations 1.69938 1.05891 1.26686 1.51073 1.24894 0.94795 0.98968 0.95353 0.86522 0.80050 0.83853 0.77463 1.19966 1.20958 1.21161 1.21470 0.93227 0.90542 1.49995 0.92555 1.19342 0.86964 0.81921 0.98328 1.46307 1.46057 1.36210 0.98701 1.19877 0.93115 0.90224 0.89235 1.21675 1.01432 0.96751 0.98665 1.21433 1.03137 1.01463 0.91532 1.19852 0.96834 0.94110 0.87058 1.41747 1.63374 1.31410 1.04392 1.72819 1.11057 1.10100 1.17765 1.73068 1.19912 1.23752 0.92749 1.21328 1.03622 0.94955 0.82123 1.23299 0.98118 1.04091 0.96107 1.23485 0.93365 1.02955 1.03750 0.92926 0.93810 0.94726 0.84419 0.84848 0.77192 0.77072 0.87285 0.86696 0.89123 0.89669 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.21 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.37 8.71 -34.44 -0.30 -14.67 16 8 H 0.06 1.62 7.21 -52.48 -0.38 1.24 16 9 C 0.25 6.56 4.67 -5.19 -0.02 6.54 16 10 N -0.56 -12.14 2.91 -167.39 -0.49 -12.63 16 11 C 0.32 6.76 7.42 -154.60 -1.15 5.61 16 12 C -0.15 -2.47 9.43 -39.04 -0.37 -2.83 16 13 C -0.14 -2.06 10.05 -39.04 -0.39 -2.46 16 14 C 0.27 4.39 7.86 -154.62 -1.21 3.18 16 15 N -0.86 -10.04 9.10 31.27 0.28 -9.75 16 16 N -0.27 -5.68 11.52 31.28 0.36 -5.32 16 17 N -0.25 -5.84 10.40 31.28 0.33 -5.51 16 18 C 0.09 1.49 5.98 -67.93 -0.41 1.08 16 19 C -0.18 -2.96 9.74 -26.69 -0.26 -3.22 16 20 C -0.20 -3.29 10.28 -26.69 -0.27 -3.56 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.04 1.27 7.56 -51.93 -0.39 0.88 16 23 H 0.03 0.91 5.99 -51.93 -0.31 0.60 16 24 H 0.14 1.81 6.22 -52.49 -0.33 1.49 16 25 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 26 H 0.40 3.25 8.84 -40.82 -0.36 2.89 16 27 H 0.40 4.40 8.96 -40.82 -0.37 4.03 16 28 H 0.11 1.52 6.44 -51.93 -0.33 1.18 16 29 H 0.11 2.27 6.11 -51.93 -0.32 1.95 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.11 2.18 6.94 -51.93 -0.36 1.82 16 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -32.81 274.59 -7.70 -40.51 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.55 Total: 5.92 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.48 Total: -8.68 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 1.22 Total: -59.10 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.81 -7.70 -40.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159910695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.648 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds