Wall clock time and date at job start Mon Mar 30 2020 03:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99678 * 2 1 4 4 H 1.48501 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47620 * 300.00033 * 3 2 1 6 6 H 1.48496 * 109.47596 * 60.00502 * 3 2 1 7 7 C 1.37872 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99576 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00340 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.39361 * 120.00205 * 270.27759 * 10 9 7 12 12 C 1.39585 * 120.07505 * 189.06392 * 11 10 9 13 13 C 1.38357 * 117.96014 * 179.97438 * 12 11 10 14 14 C 1.39584 * 117.96763 * 359.97438 * 13 12 11 15 15 N 1.39352 * 120.07681 * 180.02562 * 14 13 12 16 16 N 1.32272 * 119.84688 * 0.02562 * 14 13 12 17 17 N 1.28349 * 122.19028 * 359.70318 * 16 14 13 18 18 C 1.46502 * 119.99748 * 89.99883 * 10 9 7 19 19 C 1.52997 * 117.50048 * 2.77669 * 18 10 9 20 20 C 1.53000 * 117.50091 * 294.11280 * 18 10 9 21 21 H 0.96998 * 119.99877 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47026 * 60.00343 * 9 7 2 23 23 H 1.08998 * 109.46992 * 299.99802 * 9 7 2 24 24 H 1.07998 * 121.01559 * 0.02562 * 12 11 10 25 25 H 1.07998 * 121.01566 * 179.97438 * 13 12 11 26 26 H 0.97003 * 119.99786 * 0.02562 * 15 14 13 27 27 H 0.96999 * 120.00477 * 179.97438 * 15 14 13 28 28 H 1.09003 * 115.54681 * 148.44553 * 18 10 9 29 29 H 1.09000 * 117.50149 * 0.02562 * 19 18 10 30 30 H 1.08996 * 117.49719 * 145.02172 * 19 18 10 31 31 H 1.08996 * 117.49925 * 214.98182 * 20 18 10 32 32 H 1.08999 * 117.49459 * 0.02562 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6603 -4.1385 -1.2074 12 6 3.4143 -5.3132 -1.2176 13 6 3.8453 -5.7967 -2.4402 14 6 3.4988 -5.0799 -3.5867 15 7 3.9093 -5.5275 -4.8409 16 7 2.7799 -3.9748 -3.4799 17 7 2.3756 -3.5289 -2.3463 18 6 2.6791 -4.1694 1.2682 19 6 2.0958 -3.5883 2.5578 20 6 3.5381 -3.2680 2.1573 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.6531 -5.8292 -0.2994 25 1 4.4320 -6.7011 -2.5055 26 1 4.4362 -6.3383 -4.9179 27 1 3.6676 -5.0288 -5.6370 28 1 2.9122 -5.2341 1.2564 29 1 1.3576 -2.7920 2.4622 30 1 1.9456 -4.2706 3.3944 31 1 4.3361 -3.7397 2.7306 32 1 3.7487 -2.2606 1.7983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159910695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:21 Heat of formation + Delta-G solvation = 81.987746 kcal Electronic energy + Delta-G solvation = -16250.071618 eV Core-core repulsion = 13632.632802 eV Total energy + Delta-G solvation = -2617.438816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63893 -39.17078 -36.19040 -35.13740 -34.40385 -33.07235 -30.23874 -28.72508 -25.78916 -24.44358 -24.01585 -23.04806 -21.17747 -18.82752 -18.61645 -18.45788 -17.95365 -16.74132 -16.25538 -15.92845 -15.78575 -15.51081 -14.65962 -14.49034 -14.12278 -13.47713 -13.36380 -13.23367 -12.68958 -12.57633 -12.23406 -12.00189 -11.98164 -11.79124 -11.38991 -11.12561 -10.98581 -10.56364 -10.07614 -9.67747 -8.30145 -7.84921 -6.25486 0.17471 0.71831 1.33661 1.36712 1.47234 2.15884 2.41647 2.83959 2.93414 3.14500 3.17400 3.79433 3.93499 3.94382 4.07751 4.19768 4.27113 4.36006 4.72674 4.86097 4.92218 5.05374 5.14279 5.21694 5.31413 5.40827 5.51880 5.73364 6.15935 6.39853 6.49164 6.70935 6.87051 7.07106 7.42095 8.39077 8.91869 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.008719 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.833899 B = 3210.710772 C = 4039.306690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.043 0.957 9 C 0.276 3.724 10 N -0.577 5.577 11 C 0.291 3.709 12 C -0.139 4.139 13 C -0.124 4.124 14 C 0.272 3.728 15 N -0.837 5.837 16 N -0.325 5.325 17 N -0.316 5.316 18 C 0.080 3.920 19 C -0.178 4.178 20 C -0.193 4.193 21 H 0.264 0.736 22 H -0.002 1.002 23 H 0.023 0.977 24 H 0.179 0.821 25 H 0.191 0.809 26 H 0.421 0.579 27 H 0.405 0.595 28 H 0.156 0.844 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.087 -15.376 -0.156 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.155 3.845 10 N -0.291 5.291 11 C 0.046 3.954 12 C -0.172 4.172 13 C -0.157 4.157 14 C 0.023 3.977 15 N -0.388 5.388 16 N -0.172 5.172 17 N -0.163 5.163 18 C -0.025 4.025 19 C -0.216 4.216 20 C -0.232 4.232 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.040 0.960 24 H 0.196 0.804 25 H 0.208 0.792 26 H 0.254 0.746 27 H 0.234 0.766 28 H 0.173 0.827 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.096 -13.905 -0.729 16.632 hybrid contribution 0.688 0.315 0.118 0.765 sum 9.783 -13.590 -0.612 16.757 Atomic orbital electron populations 1.70049 1.07245 1.27565 1.52227 1.25706 0.95652 1.02403 0.95225 0.85550 0.78691 0.79852 0.77800 1.19799 1.20955 1.19600 1.21633 0.92547 0.91940 1.49123 0.93908 1.18664 0.87287 0.83204 0.95371 1.46129 1.46333 1.35858 1.00746 1.20250 0.94636 0.92104 0.88370 1.22069 0.99266 0.94678 1.01154 1.22022 1.01681 1.02268 0.89731 1.20291 0.94987 0.92920 0.89458 1.41752 1.62313 1.31821 1.02961 1.72621 1.14287 1.13055 1.17259 1.72857 1.22602 1.26547 0.94259 1.21822 1.03541 0.96907 0.80228 1.23277 0.97006 1.03729 0.97540 1.23443 0.94562 1.01120 1.04083 0.92746 0.98351 0.95965 0.80401 0.79152 0.74643 0.76584 0.82663 0.91006 0.84921 0.85426 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 47.17 29.54 68.60 2.03 49.19 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.51 -30.31 8.71 25.60 0.22 -30.09 16 8 H 0.04 2.58 7.21 -2.91 -0.02 2.56 16 9 C 0.28 15.23 4.67 85.63 0.40 15.63 16 10 N -0.58 -25.51 2.91 -683.50 -1.99 -27.49 16 11 C 0.29 12.41 7.42 133.09 0.99 13.39 16 12 C -0.14 -4.08 9.43 22.62 0.21 -3.87 16 13 C -0.12 -3.05 10.05 22.62 0.23 -2.83 16 14 C 0.27 8.38 7.86 133.09 1.05 9.43 16 15 N -0.84 -16.96 9.10 -54.99 -0.50 -17.46 16 16 N -0.32 -14.01 11.52 -54.95 -0.63 -14.64 16 17 N -0.32 -15.68 10.40 -54.95 -0.57 -16.25 16 18 C 0.08 2.61 5.98 44.99 0.27 2.88 16 19 C -0.18 -5.73 9.74 30.62 0.30 -5.43 16 20 C -0.19 -6.18 10.28 30.62 0.31 -5.86 16 21 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 22 H 0.00 -0.10 7.56 -2.39 -0.02 -0.12 16 23 H 0.02 1.27 5.99 -2.39 -0.01 1.25 16 24 H 0.18 3.65 6.22 -2.91 -0.02 3.63 16 25 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 26 H 0.42 4.92 8.84 -92.71 -0.82 4.10 16 27 H 0.41 8.03 8.96 -92.71 -0.83 7.20 16 28 H 0.16 3.57 6.44 -2.39 -0.02 3.56 16 29 H 0.07 2.97 6.11 -2.39 -0.01 2.95 16 30 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.07 2.70 6.94 -2.39 -0.02 2.68 16 Total: -1.00 -79.31 274.59 2.58 -76.73 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.48 Total: 13.25 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.44 Total: -5.79 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -3.41 Total: -133.38 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -79.31 2.58 -76.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159910695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.719 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds