Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99598 * 2 1 4 4 H 1.48501 * 109.47249 * 240.00080 * 3 2 1 5 5 H 1.48495 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47043 * 120.00433 * 3 2 1 7 7 C 1.37875 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99607 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46624 * 180.02562 * 9 7 2 11 11 C 1.39204 * 110.99607 * 164.50903 * 10 9 7 12 12 N 1.32396 * 120.13930 * 56.84604 * 11 10 9 13 13 C 1.32450 * 120.00256 * 180.02562 * 12 11 10 14 14 C 1.37900 * 120.27118 * 0.25095 * 13 12 11 15 15 N 1.32452 * 120.28182 * 359.48259 * 14 13 12 16 16 C 1.32392 * 119.99248 * 0.51847 * 15 14 13 17 17 N 1.39207 * 120.13631 * 179.71296 * 16 15 14 18 18 C 1.46887 * 111.00420 * 288.46397 * 10 9 7 19 19 C 1.52999 * 117.50281 * 233.41740 * 18 10 9 20 20 C 1.52997 * 117.50131 * 164.79334 * 18 10 9 21 21 H 0.96999 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47044 * 60.00303 * 9 7 2 23 23 H 1.09000 * 109.47210 * 300.00011 * 9 7 2 24 24 H 1.07995 * 119.86177 * 179.97438 * 13 12 11 25 25 H 1.08002 * 119.85522 * 179.72165 * 14 13 12 26 26 H 0.96993 * 120.00293 * 184.54814 * 17 16 15 27 27 H 0.97002 * 119.99406 * 4.54823 * 17 16 15 28 28 H 1.09005 * 115.55345 * 19.12223 * 18 10 9 29 29 H 1.08999 * 117.49566 * 359.97438 * 19 18 10 30 30 H 1.09003 * 117.50406 * 145.01461 * 19 18 10 31 31 H 1.09009 * 117.50147 * 214.97743 * 20 18 10 32 32 H 1.08999 * 117.50005 * 0.02562 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5782 -4.8086 0.3466 12 7 0.5396 -5.2410 -0.3515 13 6 -0.0559 -6.3762 -0.0185 14 6 0.3979 -7.1098 1.0574 15 7 1.4393 -6.6903 1.7601 16 6 2.0427 -5.5570 1.4369 17 7 3.1337 -5.1103 2.1771 18 6 2.8781 -3.7335 -1.3012 19 6 2.8368 -5.0955 -1.9970 20 6 4.1396 -4.5965 -1.3688 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 -0.9032 -6.7266 -0.5893 25 1 -0.0955 -8.0323 1.3257 26 1 3.5330 -4.2485 1.9806 27 1 3.4945 -5.6609 2.8895 28 1 2.8419 -2.8448 -1.9314 29 1 2.3111 -5.9042 -1.4893 30 1 2.7732 -5.1032 -3.0852 31 1 4.9333 -4.2759 -2.0438 32 1 4.4705 -5.0772 -0.4482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230654491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = 96.134621 kcal Electronic energy + Delta-G solvation = -16589.329403 eV Core-core repulsion = 13972.504041 eV Total energy + Delta-G solvation = -2616.825361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83867 -37.71434 -34.91583 -34.03199 -32.91415 -31.56055 -28.84593 -26.59692 -23.84300 -22.99227 -22.28358 -21.85313 -20.00705 -17.84927 -17.08079 -16.56829 -15.86745 -15.70854 -15.08933 -14.43311 -14.36320 -14.06788 -13.49026 -12.79693 -12.42532 -12.01893 -11.55616 -11.52453 -11.06470 -10.92722 -10.85483 -10.82650 -10.25785 -10.18750 -9.88871 -9.69198 -9.35905 -8.70040 -8.47172 -7.56943 -7.48979 -6.05299 -4.08541 1.35441 1.73817 3.31629 3.36189 3.38232 3.74910 4.13921 4.20191 4.42137 4.60027 4.81873 4.92210 5.20156 5.30128 5.46529 5.51093 5.57670 5.66812 5.89889 6.03565 6.24124 6.52314 6.52624 6.58063 7.08863 7.35381 7.39873 7.63152 7.77587 7.93811 8.06968 8.12707 8.44210 8.47589 8.98550 9.55431 11.04994 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.007928 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.409572 B = 3530.910949 C = 3741.407201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.454 5.454 11 C 0.217 3.783 12 N -0.423 5.423 13 C -0.019 4.019 14 C 0.078 3.922 15 N -0.513 5.513 16 C 0.379 3.621 17 N -0.829 5.829 18 C 0.059 3.941 19 C -0.208 4.208 20 C -0.184 4.184 21 H 0.263 0.737 22 H 0.012 0.988 23 H 0.026 0.974 24 H 0.156 0.844 25 H 0.161 0.839 26 H 0.423 0.577 27 H 0.397 0.603 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -11.410 0.437 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.177 5.177 11 C -0.025 4.025 12 N -0.140 5.140 13 C -0.179 4.179 14 C -0.081 4.081 15 N -0.237 5.237 16 C 0.134 3.866 17 N -0.374 5.374 18 C -0.050 4.050 19 C -0.247 4.247 20 C -0.223 4.223 21 H 0.072 0.928 22 H 0.030 0.970 23 H 0.044 0.956 24 H 0.174 0.826 25 H 0.178 0.822 26 H 0.256 0.744 27 H 0.226 0.774 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.479 -11.169 0.778 12.059 hybrid contribution -0.064 0.793 -0.319 0.857 sum 4.416 -10.377 0.458 11.286 Atomic orbital electron populations 1.69963 1.06084 1.27006 1.50285 1.24982 0.94846 0.99294 0.95311 0.86530 0.79384 0.82641 0.78648 1.20198 1.21378 1.20189 1.21091 0.93582 0.89569 1.50954 0.91600 1.19762 0.89317 0.85438 0.97201 1.60135 1.30030 1.00502 1.27002 1.20456 0.93364 0.94869 0.93764 1.68598 1.05909 1.12073 1.27414 1.23135 1.02462 0.93254 0.99086 1.23181 0.92498 0.99896 0.92477 1.67907 1.10977 1.14014 1.30831 1.19073 0.88722 0.89473 0.89316 1.42187 1.32407 1.24501 1.38282 1.22543 0.97473 0.94167 0.90826 1.23389 1.01602 0.99871 0.99803 1.23088 0.91760 1.05144 1.02262 0.92767 0.96982 0.95558 0.82634 0.82207 0.74390 0.77423 0.85551 0.89632 0.89385 0.89047 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.00 8.57 -34.44 -0.30 -14.29 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.21 5.39 4.36 -4.97 -0.02 5.36 16 10 N -0.45 -9.70 3.81 -166.60 -0.63 -10.34 16 11 C 0.22 4.34 3.72 -154.44 -0.57 3.77 16 12 N -0.42 -8.36 8.49 -12.06 -0.10 -8.46 16 13 C -0.02 -0.30 11.20 -17.41 -0.19 -0.50 16 14 C 0.08 1.12 11.20 -17.41 -0.19 0.93 16 15 N -0.51 -8.51 10.52 -12.05 -0.13 -8.63 16 16 C 0.38 6.75 7.80 -154.44 -1.21 5.55 16 17 N -0.83 -12.34 9.07 31.38 0.28 -12.05 16 18 C 0.06 1.15 5.68 -67.72 -0.38 0.76 16 19 C -0.21 -3.58 9.25 -26.73 -0.25 -3.83 16 20 C -0.18 -2.97 10.32 -26.73 -0.28 -3.25 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 22 H 0.01 0.35 8.06 -51.93 -0.42 -0.07 16 23 H 0.03 0.76 7.98 -51.93 -0.41 0.35 16 24 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 25 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.42 6.46 8.13 -40.82 -0.33 6.13 16 27 H 0.40 4.81 8.96 -40.82 -0.37 4.45 16 28 H 0.13 2.65 7.57 -51.93 -0.39 2.26 16 29 H 0.09 1.57 5.79 -51.93 -0.30 1.27 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 276.73 15.07 4.17 4.17 Total: -1.00 -30.82 276.73 -8.07 -38.89 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.88 Total: 9.90 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.49 Total: -3.99 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.16 Total: -65.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.82 -8.07 -38.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230654491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.023 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds