Wall clock time and date at job start Mon Mar 30 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99598 * 2 1 4 4 H 1.48501 * 109.47249 * 240.00080 * 3 2 1 5 5 H 1.48495 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47043 * 120.00433 * 3 2 1 7 7 C 1.37875 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99607 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46624 * 180.02562 * 9 7 2 11 11 C 1.39204 * 110.99607 * 164.50903 * 10 9 7 12 12 N 1.32396 * 120.13930 * 56.84604 * 11 10 9 13 13 C 1.32450 * 120.00256 * 180.02562 * 12 11 10 14 14 C 1.37900 * 120.27118 * 0.25095 * 13 12 11 15 15 N 1.32452 * 120.28182 * 359.48259 * 14 13 12 16 16 C 1.32392 * 119.99248 * 0.51847 * 15 14 13 17 17 N 1.39207 * 120.13631 * 179.71296 * 16 15 14 18 18 C 1.46887 * 111.00420 * 288.46397 * 10 9 7 19 19 C 1.52999 * 117.50281 * 233.41740 * 18 10 9 20 20 C 1.52997 * 117.50131 * 164.79334 * 18 10 9 21 21 H 0.96999 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47044 * 60.00303 * 9 7 2 23 23 H 1.09000 * 109.47210 * 300.00011 * 9 7 2 24 24 H 1.07995 * 119.86177 * 179.97438 * 13 12 11 25 25 H 1.08002 * 119.85522 * 179.72165 * 14 13 12 26 26 H 0.96993 * 120.00293 * 184.54814 * 17 16 15 27 27 H 0.97002 * 119.99406 * 4.54823 * 17 16 15 28 28 H 1.09005 * 115.55345 * 19.12223 * 18 10 9 29 29 H 1.08999 * 117.49566 * 359.97438 * 19 18 10 30 30 H 1.09003 * 117.50406 * 145.01461 * 19 18 10 31 31 H 1.09009 * 117.50147 * 214.97743 * 20 18 10 32 32 H 1.08999 * 117.50005 * 0.02562 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5782 -4.8086 0.3466 12 7 0.5396 -5.2410 -0.3515 13 6 -0.0559 -6.3762 -0.0185 14 6 0.3979 -7.1098 1.0574 15 7 1.4393 -6.6903 1.7601 16 6 2.0427 -5.5570 1.4369 17 7 3.1337 -5.1103 2.1771 18 6 2.8781 -3.7335 -1.3012 19 6 2.8368 -5.0955 -1.9970 20 6 4.1396 -4.5965 -1.3688 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 -0.9032 -6.7266 -0.5893 25 1 -0.0955 -8.0323 1.3257 26 1 3.5330 -4.2485 1.9806 27 1 3.4945 -5.6609 2.8895 28 1 2.8419 -2.8448 -1.9314 29 1 2.3111 -5.9042 -1.4893 30 1 2.7732 -5.1032 -3.0852 31 1 4.9333 -4.2759 -2.0438 32 1 4.4705 -5.0772 -0.4482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230654491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:25 Heat of formation + Delta-G solvation = 74.201683 kcal Electronic energy + Delta-G solvation = -16590.280486 eV Core-core repulsion = 13972.504041 eV Total energy + Delta-G solvation = -2617.776445 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.18948 -39.17798 -36.20101 -35.67646 -34.68436 -33.17828 -30.29201 -28.44475 -25.36572 -24.31061 -24.17266 -23.18663 -21.53076 -19.20245 -18.49922 -18.28304 -17.53863 -17.31783 -16.40326 -16.22865 -15.72508 -15.34108 -14.93855 -14.40539 -14.22449 -13.71879 -13.33037 -12.89359 -12.76483 -12.68344 -12.40153 -12.15868 -12.10991 -11.88628 -11.47591 -11.20111 -11.15719 -10.60373 -10.06149 -9.21031 -8.76722 -8.19477 -6.31683 0.05073 0.42060 1.42999 1.46510 1.54363 2.38556 2.51108 2.74905 2.89182 3.10824 3.17743 3.52415 3.72374 3.88363 4.04845 4.17251 4.32855 4.51021 4.55092 4.71381 4.87181 4.98068 5.06783 5.22019 5.25337 5.37565 5.68011 5.97489 6.09963 6.15260 6.45374 6.65853 6.81355 6.87994 7.21005 7.38101 8.91243 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.007928 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.409572 B = 3530.910949 C = 3741.407201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.233 3.767 10 N -0.446 5.446 11 C 0.174 3.826 12 N -0.456 5.456 13 C -0.028 4.028 14 C 0.098 3.902 15 N -0.517 5.517 16 C 0.373 3.627 17 N -0.818 5.818 18 C 0.022 3.978 19 C -0.197 4.197 20 C -0.151 4.151 21 H 0.264 0.736 22 H -0.029 1.029 23 H -0.014 1.014 24 H 0.188 0.812 25 H 0.211 0.789 26 H 0.420 0.580 27 H 0.411 0.589 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -12.671 0.701 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C 0.108 3.892 10 N -0.167 5.167 11 C -0.066 4.066 12 N -0.173 5.173 13 C -0.189 4.189 14 C -0.062 4.062 15 N -0.241 5.241 16 C 0.128 3.872 17 N -0.363 5.363 18 C -0.086 4.086 19 C -0.235 4.235 20 C -0.189 4.189 21 H 0.073 0.927 22 H -0.011 1.011 23 H 0.004 0.996 24 H 0.205 0.795 25 H 0.227 0.773 26 H 0.253 0.747 27 H 0.242 0.758 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.859 -12.439 1.064 13.791 hybrid contribution -0.579 1.000 -0.404 1.224 sum 5.279 -11.440 0.660 12.616 Atomic orbital electron populations 1.70119 1.07995 1.27997 1.51472 1.25969 0.95674 1.03379 0.94670 0.85364 0.78019 0.77486 0.79297 1.19008 1.21233 1.19009 1.21407 0.93940 0.90307 1.50394 0.90940 1.19185 0.89232 0.87613 0.93209 1.59978 1.28593 1.00179 1.27997 1.20429 0.95078 0.95346 0.95734 1.68474 1.06439 1.13936 1.28492 1.23744 1.03002 0.92204 0.99961 1.23992 0.90917 1.00569 0.90699 1.68074 1.11658 1.13311 1.31107 1.19111 0.89404 0.89758 0.88891 1.42128 1.31573 1.24437 1.38145 1.22496 1.00820 0.94652 0.90678 1.23337 1.02153 0.97774 1.00273 1.23132 0.91080 1.02137 1.02536 0.92736 1.01142 0.99562 0.79533 0.77253 0.74683 0.75783 0.87963 0.90480 0.88108 0.86497 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.52 -29.41 8.57 25.60 0.22 -29.19 16 8 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 9 C 0.23 12.88 4.36 85.56 0.37 13.25 16 10 N -0.45 -19.69 3.81 -681.01 -2.59 -22.29 16 11 C 0.17 7.07 3.72 133.25 0.50 7.56 16 12 N -0.46 -18.24 8.49 -192.06 -1.63 -19.87 16 13 C -0.03 -0.83 11.20 84.52 0.95 0.11 16 14 C 0.10 2.52 11.20 84.52 0.95 3.47 16 15 N -0.52 -16.05 10.52 -192.05 -2.02 -18.07 16 16 C 0.37 13.01 7.80 133.25 1.04 14.05 16 17 N -0.82 -23.67 9.07 -54.65 -0.50 -24.16 16 18 C 0.02 0.88 5.68 44.92 0.26 1.14 16 19 C -0.20 -6.66 9.25 30.59 0.28 -6.37 16 20 C -0.15 -4.62 10.32 30.59 0.32 -4.31 16 21 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 22 H -0.03 -1.82 8.06 -2.39 -0.02 -1.84 16 23 H -0.01 -0.85 7.98 -2.39 -0.02 -0.87 16 24 H 0.19 4.20 8.06 -2.91 -0.02 4.17 16 25 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 26 H 0.42 12.72 8.13 -92.71 -0.75 11.97 16 27 H 0.41 9.35 8.96 -92.71 -0.83 8.52 16 28 H 0.10 4.49 7.57 -2.38 -0.02 4.47 16 29 H 0.08 2.78 5.79 -2.39 -0.01 2.76 16 30 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -69.67 276.73 0.47 -69.20 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.43 Total: 25.97 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.34 Total: 0.24 kcal Atomic # 7 Polarization: -134.94 SS G_CDS: -6.46 Total: -141.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.67 0.47 -69.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230654491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.401 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds