Wall clock time and date at job start Mon Mar 30 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00026 * 2 1 3 5 5 N 1.46899 * 109.46771 * 183.76288 * 4 2 1 6 6 N 1.46496 * 109.47332 * 119.99931 * 2 1 3 7 7 C 1.46498 * 120.00110 * 59.67713 * 6 2 1 8 8 C 1.50709 * 109.46987 * 263.61046 * 7 6 2 9 9 H 1.07996 * 119.99733 * 3.58893 * 8 7 6 10 10 C 1.37871 * 119.99752 * 183.59829 * 8 7 6 11 11 N 1.31514 * 120.00552 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99725 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46994 * 89.99548 * 12 10 8 14 14 H 1.48498 * 109.47056 * 209.99820 * 12 10 8 15 15 H 1.48505 * 109.46888 * 329.99674 * 12 10 8 16 16 C 1.39678 * 120.00176 * 239.67206 * 6 2 1 17 17 C 1.38905 * 120.07664 * 174.19503 * 16 6 2 18 18 C 1.38105 * 119.92892 * 179.72852 * 17 16 6 19 19 C 1.38288 * 120.06904 * 0.27912 * 18 17 16 20 20 C 1.38282 * 120.15522 * 359.97438 * 19 18 17 21 21 C 1.38104 * 120.07082 * 0.02562 * 20 19 18 22 22 H 1.09007 * 109.46808 * 295.03572 * 1 2 3 23 23 H 1.09002 * 109.47271 * 55.03256 * 1 2 3 24 24 H 1.08994 * 109.47008 * 175.03839 * 1 2 3 25 25 H 1.08998 * 109.46981 * 303.76119 * 4 2 1 26 26 H 1.09000 * 109.46730 * 63.76134 * 4 2 1 27 27 H 1.00899 * 111.00377 * 63.03275 * 5 4 2 28 28 H 1.00900 * 110.99458 * 186.98666 * 5 4 2 29 29 H 1.08999 * 109.47132 * 23.60279 * 7 6 2 30 30 H 1.09000 * 109.47278 * 143.61023 * 7 6 2 31 31 H 0.96999 * 120.00408 * 180.02562 * 11 10 8 32 32 H 1.08010 * 120.03986 * 0.02562 * 17 16 6 33 33 H 1.07992 * 119.96761 * 180.30602 * 18 17 16 34 34 H 1.08004 * 119.92087 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.96440 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.04156 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5062 -0.8005 -1.2047 6 7 2.0184 -0.6906 1.1961 7 6 1.6587 -2.0910 1.4316 8 6 0.4694 -2.1558 2.3551 9 1 -0.0099 -1.2452 2.6829 10 6 -0.0064 -3.3775 2.7816 11 7 0.5771 -4.4864 2.3822 12 14 -1.4800 -3.4577 3.9269 13 1 -2.7272 -3.5313 3.1243 14 1 -1.3731 -4.6633 4.7873 15 1 -1.5110 -2.2422 4.7795 16 6 2.8271 -0.0138 2.1121 17 6 3.1917 -0.6263 3.3043 18 6 3.9960 0.0435 4.2052 19 6 4.4335 1.3249 3.9241 20 6 4.0681 1.9397 2.7406 21 6 3.2640 1.2755 1.8353 22 1 -0.3633 0.4349 0.9312 23 1 -0.3634 0.5890 -0.8422 24 1 -0.3633 -1.0238 -0.0889 25 1 1.6227 -1.7276 -1.2836 26 1 1.7327 -0.1700 -2.1380 27 1 3.8149 -1.3492 -0.4162 28 1 3.8748 -1.1694 -2.0685 29 1 1.4083 -2.5663 0.4831 30 1 2.5013 -2.6109 1.8873 31 1 0.2421 -5.3459 2.6820 32 1 2.8506 -1.6272 3.5243 33 1 4.2840 -0.4339 5.1300 34 1 5.0628 1.8464 4.6302 35 1 4.4119 2.9403 2.5239 36 1 2.9792 1.7560 0.9109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235436395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:08 Heat of formation + Delta-G solvation = 12.718676 kcal Electronic energy + Delta-G solvation = -16926.434193 eV Core-core repulsion = 14409.531988 eV Total energy + Delta-G solvation = -2516.902205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47065 -38.11303 -35.32654 -34.20502 -32.14986 -31.54753 -30.28415 -28.10006 -25.70277 -24.98905 -23.28286 -22.25101 -20.32449 -18.75130 -18.42798 -16.80470 -16.76273 -16.37124 -15.91873 -15.74714 -14.98460 -14.71364 -14.48493 -14.26868 -14.10587 -13.56234 -13.21286 -13.14745 -13.00123 -12.80749 -12.63620 -12.52980 -12.13029 -11.93766 -11.85790 -11.59791 -11.19232 -10.62493 -10.45593 -9.59327 -9.58759 -8.32570 -7.74269 -6.30645 0.77685 0.99570 1.34987 1.37114 1.47066 2.34952 2.61546 3.10241 3.25347 3.63231 4.05054 4.17778 4.33210 4.38224 4.49107 4.56890 4.70297 4.75611 4.84387 4.84534 4.97184 5.02167 5.10976 5.20879 5.28464 5.41476 5.46839 5.68313 5.77454 5.84482 5.95640 6.13656 6.16991 6.29702 6.58141 6.61741 6.91700 7.05000 7.40398 8.86373 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.010104 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.881581 B = 2770.497232 C = 3620.185990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.147 3.853 3 H 0.098 0.902 4 C 0.056 3.944 5 N -0.842 5.842 6 N -0.610 5.610 7 C 0.278 3.722 8 C -0.522 4.522 9 H 0.048 0.952 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.952 3.048 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.220 3.780 17 C -0.216 4.216 18 C -0.086 4.086 19 C -0.198 4.198 20 C -0.077 4.077 21 C -0.210 4.210 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.099 0.901 27 H 0.334 0.666 28 H 0.346 0.654 29 H 0.010 0.990 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 10.188 -3.854 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.116 0.884 4 C -0.076 4.076 5 N -0.371 5.371 6 N -0.317 5.317 7 C 0.156 3.844 8 C -0.561 4.561 9 H 0.066 0.934 10 C -0.186 4.186 11 N -0.568 5.568 12 Si 0.778 3.222 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.198 1.198 16 C 0.116 3.884 17 C -0.239 4.239 18 C -0.105 4.105 19 C -0.218 4.218 20 C -0.095 4.095 21 C -0.233 4.233 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.159 0.841 29 H 0.028 0.972 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.259 10.675 -3.918 12.142 hybrid contribution -1.130 -1.955 0.621 2.342 sum 3.129 8.720 -3.297 9.833 Atomic orbital electron populations 1.22032 0.95338 1.01698 1.01603 1.21140 0.93549 0.96978 0.84019 0.88405 1.22126 0.88658 0.98426 0.98363 1.58680 1.08851 1.61271 1.08321 1.46930 1.51580 1.11644 1.21589 1.18556 0.93524 0.77735 0.94551 1.21736 1.14037 0.91872 1.28460 0.93368 1.25681 0.99687 0.95398 0.97873 1.70025 1.42355 0.97998 1.46428 0.85644 0.80021 0.77462 0.79097 1.19905 1.20812 1.19841 1.18101 0.89500 0.91864 0.88976 1.20835 1.05806 1.01404 0.95858 1.21049 0.95890 0.95364 0.98214 1.21036 1.05703 0.95726 0.99323 1.21116 0.95581 0.99727 0.93124 1.20810 1.05831 0.94337 1.02274 0.93948 0.89701 0.94048 0.97147 0.88315 0.85382 0.84136 0.97219 0.98287 0.92718 0.88721 0.85833 0.84534 0.83888 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 8.63 71.98 0.62 -4.40 16 2 C 0.15 5.02 2.87 44.99 0.13 5.15 16 3 H 0.10 3.06 5.32 -2.39 -0.01 3.04 16 4 C 0.06 1.71 6.10 86.31 0.53 2.24 16 5 N -0.84 -24.70 9.55 -186.71 -1.78 -26.48 16 6 N -0.61 -25.26 1.76 -677.65 -1.19 -26.45 16 7 C 0.28 13.96 4.08 85.64 0.35 14.31 16 8 C -0.52 -28.47 7.94 25.60 0.20 -28.27 16 9 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 10 C 0.01 0.68 5.46 84.65 0.46 1.14 16 11 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 12 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 16 C 0.22 8.94 6.50 38.21 0.25 9.19 16 17 C -0.22 -9.25 9.02 22.40 0.20 -9.05 16 18 C -0.09 -3.06 10.04 22.25 0.22 -2.84 16 19 C -0.20 -5.95 10.04 22.29 0.22 -5.73 16 20 C -0.08 -2.27 10.04 22.25 0.22 -2.04 16 21 C -0.21 -7.15 9.30 22.40 0.21 -6.94 16 22 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 25 H 0.01 0.36 6.83 -2.39 -0.02 0.35 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.33 11.45 8.39 -89.69 -0.75 10.70 16 28 H 0.35 8.33 9.08 -89.69 -0.81 7.52 16 29 H 0.01 0.52 6.53 -2.39 -0.02 0.51 16 30 H 0.00 -0.05 6.84 -2.39 -0.02 -0.06 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.09 4.70 6.13 -2.91 -0.02 4.69 16 33 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.13 3.95 5.77 -2.91 -0.02 3.93 16 Total: -1.00 -60.69 292.66 2.47 -58.22 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.48 Total: 29.39 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.62 Total: -27.23 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -2.69 Total: -106.63 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.69 2.47 -58.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235436395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.934 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds