Wall clock time and date at job start Mon Mar 30 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63847 * 2 1 4 4 C 1.34851 * 108.22295 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41480 * 0.02562 * 4 3 2 6 6 C 1.34858 * 107.41686 * 359.73710 * 5 4 3 7 7 C 1.50694 * 125.88994 * 180.25251 * 6 5 4 8 8 H 1.09004 * 109.52487 * 155.19951 * 7 6 5 9 9 C 1.53116 * 109.52616 * 275.32823 * 7 6 5 10 10 C 1.53043 * 109.28014 * 177.49747 * 9 7 6 11 11 N 1.46852 * 109.57340 * 300.91716 * 10 9 7 12 12 C 1.46847 * 111.19815 * 61.70637 * 11 10 9 13 13 H 1.09001 * 109.45352 * 58.27145 * 12 11 10 14 14 C 1.50703 * 109.45920 * 178.24137 * 12 11 10 15 15 H 1.07998 * 119.99334 * 120.05301 * 14 12 11 16 16 C 1.37873 * 120.00169 * 300.05317 * 14 12 11 17 17 N 1.31516 * 120.00039 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00114 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46795 * 60.00098 * 18 16 14 20 20 H 1.48498 * 109.47176 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46903 * 300.00081 * 18 16 14 22 22 C 1.53038 * 109.52375 * 298.25931 * 12 11 10 23 23 H 1.09002 * 109.47391 * 90.02039 * 1 2 3 24 24 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 26 26 H 1.08001 * 125.88585 * 359.97438 * 3 2 1 27 27 H 1.07993 * 126.29100 * 180.02562 * 4 3 2 28 28 H 1.08001 * 126.29295 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.50008 * 297.49910 * 9 7 6 30 30 H 1.08994 * 109.50299 * 57.61550 * 9 7 6 31 31 H 1.08995 * 109.46522 * 180.86715 * 10 9 7 32 32 H 1.09008 * 109.40113 * 60.92473 * 10 9 7 33 33 H 1.00899 * 110.99353 * 297.61084 * 11 10 9 34 34 H 0.96999 * 120.00034 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.50055 * 299.23642 * 22 12 11 36 36 H 1.09004 * 109.49944 * 179.12346 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 0.0044 7 6 1.7819 -2.5374 0.0111 8 1 0.7834 -2.5859 0.4457 9 6 1.7418 -3.0703 -1.4238 10 6 1.3164 -4.5403 -1.4052 11 7 2.2675 -5.3176 -0.6003 12 6 2.2870 -4.8542 0.7930 13 1 1.2860 -4.9360 1.2168 14 6 3.2413 -5.7043 1.5915 15 1 4.0882 -5.2488 2.0832 16 6 3.0334 -7.0634 1.6942 17 7 2.0025 -7.6180 1.0949 18 14 4.2160 -8.1170 2.6846 19 1 4.2342 -7.6493 4.0939 20 1 3.7742 -9.5339 2.6384 21 1 5.5800 -8.0053 2.1082 22 6 2.7429 -3.3941 0.8400 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 1.9172 2.1324 -0.0004 27 1 4.4165 1.3437 -0.0003 28 1 4.4166 -1.3437 -0.0026 29 1 1.0264 -2.4908 -2.0073 30 1 2.7318 -2.9845 -1.8716 31 1 1.3017 -4.9271 -2.4241 32 1 0.3200 -4.6234 -0.9708 33 1 3.1916 -5.2879 -1.0042 34 1 1.8564 -8.5743 1.1669 35 1 3.7491 -3.3136 0.4289 36 1 2.7423 -3.0458 1.8730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259390697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:46 Heat of formation + Delta-G solvation = 24.663522 kcal Electronic energy + Delta-G solvation = -16737.826432 eV Core-core repulsion = 14221.442195 eV Total energy + Delta-G solvation = -2516.384237 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18984 -39.31229 -34.83459 -33.70133 -33.14493 -31.64241 -28.62952 -27.16948 -26.96973 -24.22032 -22.96438 -21.88681 -20.71413 -19.82306 -18.54607 -17.63112 -16.53309 -16.18290 -15.82269 -15.43022 -15.20600 -14.93064 -14.32534 -14.08474 -14.01086 -13.75083 -13.18717 -13.07785 -12.95679 -12.87331 -12.73324 -12.55401 -12.33678 -12.17540 -11.75539 -11.52002 -11.39233 -10.81484 -10.48785 -9.45442 -8.84576 -8.53534 -7.93920 -6.15591 1.38019 1.46044 1.46803 1.54121 2.14662 2.15209 2.49808 3.26474 3.76394 3.89648 4.02768 4.10333 4.17035 4.33357 4.40109 4.48402 4.52769 4.68302 4.69913 4.77415 4.80747 4.89643 4.93036 5.06260 5.19975 5.23719 5.32605 5.46245 5.50887 5.65590 5.82696 6.16568 6.25091 6.35894 6.59758 6.69871 7.15985 7.18190 7.56944 9.08718 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.006430 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.659595 B = 4353.870743 C = 4725.937139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.453 5.453 3 C -0.018 4.018 4 C -0.221 4.221 5 C -0.222 4.222 6 C 0.017 3.983 7 C -0.009 4.009 8 H 0.063 0.937 9 C -0.127 4.127 10 C 0.060 3.940 11 N -0.668 5.668 12 C 0.227 3.773 13 H 0.000 1.000 14 C -0.556 4.556 15 H 0.047 0.953 16 C 0.036 3.964 17 N -0.880 5.880 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.113 4.113 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.194 0.806 27 H 0.146 0.854 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.320 0.680 34 H 0.255 0.745 35 H 0.049 0.951 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 15.467 -4.259 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.129 5.129 3 C -0.147 4.147 4 C -0.246 4.246 5 C -0.247 4.247 6 C -0.095 4.095 7 C -0.028 4.028 8 H 0.082 0.918 9 C -0.167 4.167 10 C -0.070 4.070 11 N -0.296 5.296 12 C 0.119 3.881 13 H 0.018 0.982 14 C -0.595 4.595 15 H 0.066 0.934 16 C -0.167 4.167 17 N -0.516 5.516 18 Si 0.771 3.229 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.153 4.153 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.095 0.905 26 H 0.211 0.789 27 H 0.164 0.836 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.109 14.779 -4.172 15.896 hybrid contribution 1.141 -0.008 0.556 1.269 sum -2.968 14.771 -3.616 15.494 Atomic orbital electron populations 1.22236 0.75830 1.05240 1.04281 1.44182 1.07233 1.05300 1.56159 1.22266 0.90113 0.92290 1.10071 1.21103 0.97269 0.94380 1.11801 1.20797 0.95476 0.95996 1.12419 1.20413 0.90837 0.88668 1.09540 1.19592 0.98547 0.87890 0.96768 0.91842 1.22191 1.01550 0.98019 0.94927 1.22008 0.96848 0.90273 0.97875 1.60727 1.10597 1.55595 1.02646 1.18850 0.94530 0.88187 0.86513 0.98204 1.21318 1.12047 0.93408 1.32686 0.93429 1.25657 0.96351 0.99100 0.95611 1.70222 1.28711 1.10679 1.41999 0.85847 0.79798 0.77836 0.79378 1.20010 1.21061 1.19841 1.22099 0.97961 0.97265 0.97996 0.89731 0.87375 0.90480 0.78866 0.83583 0.86329 0.91148 0.92594 0.90994 0.93193 0.86287 0.93612 0.93274 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 10.92 127.77 1.40 2.56 16 2 N -0.45 -11.87 3.15 -533.24 -1.68 -13.55 16 3 C -0.02 -0.43 11.43 83.21 0.95 0.53 16 4 C -0.22 -6.17 10.86 22.14 0.24 -5.93 16 5 C -0.22 -7.47 10.01 22.14 0.22 -7.24 16 6 C 0.02 0.57 5.83 41.08 0.24 0.81 16 7 C -0.01 -0.30 2.44 -11.46 -0.03 -0.33 16 8 H 0.06 2.23 6.92 -2.38 -0.02 2.22 16 9 C -0.13 -4.19 5.35 30.65 0.16 -4.03 16 10 C 0.06 2.29 6.55 86.33 0.57 2.86 16 11 N -0.67 -31.67 5.80 -495.53 -2.88 -34.55 16 12 C 0.23 11.53 2.29 44.19 0.10 11.63 16 13 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 14 C -0.56 -31.22 8.71 25.60 0.22 -31.00 16 15 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 16 C 0.04 2.05 5.39 84.65 0.46 2.51 16 17 N -0.88 -52.06 12.77 21.45 0.27 -51.78 16 18 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.11 -4.83 4.21 30.65 0.13 -4.70 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.50 6.94 -2.38 -0.02 1.48 16 26 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 27 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.12 4.16 7.29 -2.91 -0.02 4.14 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.32 14.99 8.79 -89.69 -0.79 14.20 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.05 2.12 7.15 -2.39 -0.02 2.10 16 36 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -65.33 290.94 2.67 -62.66 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.27 Total: 23.27 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.66 Total: -32.34 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -4.28 Total: -99.88 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.33 2.67 -62.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259390697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.322 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds