Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36335 * 125.63716 * 2 1 4 4 C 1.34854 * 108.22050 * 180.02562 * 3 2 1 5 5 C 1.40891 * 107.41757 * 359.97438 * 4 3 2 6 6 C 1.34855 * 107.41598 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.88781 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46064 * 205.01939 * 7 6 5 9 9 C 1.53042 * 109.46286 * 85.05440 * 7 6 5 10 10 C 1.53120 * 109.27601 * 180.80401 * 9 7 6 11 11 H 1.09005 * 109.51815 * 297.74314 * 10 9 7 12 12 C 1.50700 * 109.57121 * 177.59212 * 10 9 7 13 13 H 1.07990 * 120.00433 * 0.27797 * 12 10 9 14 14 C 1.37882 * 119.99777 * 180.28411 * 12 10 9 15 15 N 1.31508 * 120.00203 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99860 * 359.97438 * 14 12 10 17 17 H 1.48495 * 109.47538 * 89.99939 * 16 14 12 18 18 H 1.48505 * 109.46959 * 210.00140 * 16 14 12 19 19 H 1.48500 * 109.47081 * 329.99461 * 16 14 12 20 20 C 1.53117 * 109.16245 * 57.65067 * 10 9 7 21 21 C 1.53038 * 109.28164 * 302.34501 * 20 10 9 22 22 N 1.46841 * 109.46496 * 324.99837 * 7 6 5 23 23 H 1.08997 * 109.46910 * 89.97533 * 1 2 3 24 24 H 1.09011 * 109.46912 * 209.97480 * 1 2 3 25 25 H 1.08989 * 109.47029 * 329.97183 * 1 2 3 26 26 H 1.08000 * 125.89453 * 0.02562 * 3 2 1 27 27 H 1.07999 * 126.28918 * 179.74004 * 4 3 2 28 28 H 1.08003 * 126.29399 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.50088 * 300.74389 * 9 7 6 30 30 H 1.08999 * 109.50044 * 60.86031 * 9 7 6 31 31 H 0.96995 * 120.00245 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.50146 * 182.40699 * 20 10 9 33 33 H 1.08996 * 109.50064 * 62.28802 * 20 10 9 34 34 H 1.09004 * 109.46148 * 299.16959 * 21 20 10 35 35 H 1.08995 * 109.46585 * 179.19586 * 21 20 10 36 36 H 1.00903 * 111.00169 * 305.85769 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1080 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 -0.0003 6 6 2.2594 -1.1082 -0.0002 7 6 1.7819 -2.5375 0.0006 8 1 0.7835 -2.5872 -0.4341 9 6 1.7382 -3.0597 1.4385 10 6 1.2719 -4.5182 1.4326 11 1 0.2612 -4.5758 1.0285 12 6 1.2830 -5.0574 2.8398 13 1 1.5874 -4.4228 3.6589 14 6 0.9046 -6.3610 3.0816 15 7 0.9147 -6.8318 4.3095 16 14 0.3775 -7.4586 1.6648 17 1 1.5635 -8.1659 1.1187 18 1 -0.6118 -8.4536 2.1511 19 1 -0.2384 -6.6287 0.5984 20 6 2.2199 -5.3455 0.5601 21 6 2.2496 -4.7570 -0.8523 22 7 2.7026 -3.3614 -0.7930 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3633 0.8896 0.5142 26 1 1.9172 2.1324 0.0004 27 1 4.4165 1.3437 -0.0047 28 1 4.4166 -1.3438 -0.0011 29 1 2.7335 -2.9976 1.8786 30 1 1.0429 -2.4576 2.0233 31 1 0.6489 -7.7490 4.4795 32 1 1.8687 -6.3764 0.5174 33 1 3.2227 -5.3194 0.9864 34 1 1.2491 -4.7960 -1.2831 35 1 2.9347 -5.3352 -1.4724 36 1 2.8217 -2.9803 -1.7196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = 29.422461 kcal Electronic energy + Delta-G solvation = -16834.313396 eV Core-core repulsion = 14318.135522 eV Total energy + Delta-G solvation = -2516.177874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.13225 -39.45679 -35.28252 -33.65257 -33.04769 -32.55999 -28.68237 -27.45789 -27.12182 -24.10714 -23.34102 -21.46742 -20.50872 -19.93164 -18.82015 -18.06552 -17.08489 -16.35598 -16.07794 -15.67908 -15.20048 -14.84236 -14.75032 -14.19055 -14.04463 -13.82614 -13.46610 -13.26990 -13.07593 -12.96052 -12.81064 -12.72541 -12.23071 -12.11732 -11.73333 -11.48193 -11.05330 -10.93899 -10.65023 -9.40581 -9.37467 -8.84043 -8.30593 -6.34810 1.29739 1.34122 1.38190 1.45423 2.12678 2.20949 2.31684 3.04298 3.26177 3.82900 4.04992 4.12455 4.16522 4.27674 4.35653 4.39607 4.45444 4.50609 4.67836 4.70679 4.83037 4.86146 4.88959 4.91454 5.09572 5.22427 5.43481 5.48825 5.54286 5.64599 5.75449 6.00594 6.22202 6.30245 6.41390 6.59774 6.61279 6.72058 7.30231 8.86738 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.006998 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.196483 B = 4000.196326 C = 4206.520586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.453 5.453 3 C -0.013 4.013 4 C -0.225 4.225 5 C -0.191 4.191 6 C 0.002 3.998 7 C 0.172 3.828 8 H 0.040 0.960 9 C -0.073 4.073 10 C 0.015 3.985 11 H 0.021 0.979 12 C -0.520 4.520 13 H 0.026 0.974 14 C 0.009 3.991 15 N -0.952 5.952 16 Si 0.954 3.046 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.245 1.245 20 C -0.118 4.118 21 C 0.066 3.934 22 N -0.675 5.675 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.193 0.807 27 H 0.147 0.853 28 H 0.128 0.872 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.266 0.734 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 12.956 -14.732 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.129 5.129 3 C -0.143 4.143 4 C -0.249 4.249 5 C -0.216 4.216 6 C -0.110 4.110 7 C 0.062 3.938 8 H 0.058 0.942 9 C -0.111 4.111 10 C -0.004 4.004 11 H 0.039 0.961 12 C -0.558 4.558 13 H 0.044 0.956 14 C -0.187 4.187 15 N -0.593 5.593 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.226 1.226 19 H -0.169 1.169 20 C -0.156 4.156 21 C -0.063 4.063 22 N -0.308 5.308 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.210 0.790 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.611 12.708 -14.110 18.999 hybrid contribution -0.837 -0.782 -0.204 1.164 sum -1.448 11.926 -14.314 18.688 Atomic orbital electron populations 1.22228 0.76099 1.05153 1.04250 1.44119 1.07073 1.05379 1.56367 1.22274 0.90241 0.92163 1.09666 1.21161 0.97099 0.94704 1.11960 1.20781 0.95495 0.95459 1.09893 1.20147 0.91079 0.88105 1.11662 1.19608 0.93108 0.86687 0.94431 0.94196 1.21330 0.99930 0.95638 0.94250 1.19137 0.94495 0.93198 0.93547 0.96068 1.21351 1.44110 0.97238 0.93099 0.95558 1.25945 0.95012 0.99572 0.98216 1.70060 1.50321 1.16763 1.22112 0.85763 0.78191 0.78329 0.79663 1.18950 1.22638 1.16864 1.21913 1.00447 0.97769 0.95486 1.21940 0.98902 0.89017 0.96423 1.60036 1.49611 1.01737 1.19450 0.89468 0.90914 0.87507 0.79034 0.83492 0.85448 0.93770 0.93837 0.92551 0.94023 0.92817 0.94903 0.88729 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 10.70 127.77 1.37 2.54 16 2 N -0.45 -11.61 3.15 -533.25 -1.68 -13.29 16 3 C -0.01 -0.31 11.43 83.22 0.95 0.64 16 4 C -0.22 -5.92 10.86 22.14 0.24 -5.68 16 5 C -0.19 -5.99 10.34 22.14 0.23 -5.76 16 6 C 0.00 0.05 5.85 41.08 0.24 0.29 16 7 C 0.17 5.73 2.49 44.19 0.11 5.84 16 8 H 0.04 1.27 7.47 -2.38 -0.02 1.25 16 9 C -0.07 -3.08 4.58 30.65 0.14 -2.94 16 10 C 0.02 0.71 1.75 -11.46 -0.02 0.69 16 11 H 0.02 1.00 7.21 -2.38 -0.02 0.98 16 12 C -0.52 -30.62 9.15 25.60 0.23 -30.38 16 13 H 0.03 1.73 7.99 -2.92 -0.02 1.71 16 14 C 0.01 0.54 5.45 84.66 0.46 1.00 16 15 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 16 Si 0.95 45.20 24.35 68.60 1.67 46.87 16 17 H -0.26 -11.83 6.89 99.48 0.69 -11.14 16 18 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.24 -10.59 6.53 99.48 0.65 -9.94 16 20 C -0.12 -5.00 4.83 30.65 0.15 -4.85 16 21 C 0.07 2.12 6.55 86.33 0.57 2.69 16 22 N -0.67 -20.95 6.15 -495.56 -3.05 -23.99 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.55 7.52 -2.38 -0.02 1.53 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.04 1.80 3.34 -2.39 -0.01 1.79 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.35 9.08 8.78 -89.69 -0.79 8.29 16 Total: -1.00 -70.22 283.91 2.11 -68.11 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.19 Total: 18.73 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 4.67 Total: -35.91 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.42 Total: -97.80 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -70.22 2.11 -68.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.533 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds