Wall clock time and date at job start Mon Mar 30 2020 04:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36342 * 125.63681 * 2 1 4 4 C 1.34853 * 108.22072 * 180.02562 * 3 2 1 5 5 C 1.40898 * 107.41583 * 359.77548 * 4 3 2 6 6 C 1.34852 * 107.41278 * 0.37404 * 5 4 3 7 7 C 1.50703 * 125.88294 * 179.88763 * 6 5 4 8 8 H 1.09002 * 109.45727 * 204.66975 * 7 6 5 9 9 C 1.53038 * 109.46119 * 84.69456 * 7 6 5 10 10 C 1.53118 * 109.27596 * 180.80188 * 9 7 6 11 11 H 1.09003 * 109.52387 * 177.62301 * 10 9 7 12 12 C 1.50702 * 109.52167 * 297.74477 * 10 9 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72173 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.53115 * 109.16293 * 57.65165 * 10 9 7 21 21 C 1.53038 * 109.28030 * 302.34694 * 20 10 9 22 22 N 1.46844 * 109.52653 * 59.17429 * 21 20 10 23 23 H 1.08996 * 109.46913 * 269.97168 * 1 2 3 24 24 H 1.08997 * 109.46912 * 29.97649 * 1 2 3 25 25 H 1.09006 * 109.46904 * 149.97164 * 1 2 3 26 26 H 1.08000 * 125.89026 * 0.05773 * 3 2 1 27 27 H 1.08000 * 126.29188 * 180.02562 * 4 3 2 28 28 H 1.07999 * 126.28816 * 180.23537 * 5 4 3 29 29 H 1.08999 * 109.50769 * 60.86141 * 9 7 6 30 30 H 1.09000 * 109.53376 * 300.76149 * 9 7 6 31 31 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.50521 * 62.28579 * 20 10 9 33 33 H 1.09004 * 109.50689 * 182.40820 * 20 10 9 34 34 H 1.09004 * 109.45905 * 299.16188 * 21 20 10 35 35 H 1.08995 * 109.46732 * 179.19948 * 21 20 10 36 36 H 1.00894 * 111.00810 * 174.16409 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 0.0043 6 6 2.2594 -1.1081 -0.0007 7 6 1.7819 -2.5375 -0.0005 8 1 0.7829 -2.5867 -0.4338 9 6 1.7406 -3.0611 1.4369 10 6 1.2743 -4.5195 1.4305 11 1 1.2838 -4.9095 2.4483 12 6 -0.1240 -4.5986 0.8739 13 1 -0.6303 -3.6993 0.5558 14 6 -0.7545 -5.8200 0.7650 15 7 -0.1377 -6.9152 1.1520 16 14 -2.4847 -5.9190 0.0680 17 1 -2.4910 -5.3872 -1.3185 18 1 -2.9340 -7.3344 0.0578 19 1 -3.4049 -5.1141 0.9111 20 6 2.2208 -5.3459 0.5556 21 6 2.2482 -4.7561 -0.8563 22 7 2.7013 -3.3606 -0.7965 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 1.9171 2.1324 0.0009 27 1 4.4166 1.3437 -0.0003 28 1 4.4166 -1.3437 0.0088 29 1 1.0462 -2.4596 2.0236 30 1 2.7363 -2.9993 1.8761 31 1 -0.5815 -7.7744 1.0757 32 1 3.2244 -5.3203 0.9802 33 1 1.8695 -6.3769 0.5124 34 1 1.2470 -4.7948 -1.2855 35 1 2.9322 -5.3337 -1.4781 36 1 2.8188 -2.9785 -1.7229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:32 Heat of formation + Delta-G solvation = 27.539883 kcal Electronic energy + Delta-G solvation = -17066.166987 eV Core-core repulsion = 14549.907478 eV Total energy + Delta-G solvation = -2516.259509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09818 -39.34349 -35.05149 -33.62230 -32.41009 -32.33071 -28.52169 -27.18401 -27.10541 -24.08052 -23.62117 -21.40846 -20.42548 -19.87205 -18.08667 -17.76482 -16.70252 -16.60152 -15.98812 -15.56972 -15.08778 -14.66243 -14.17208 -14.12950 -13.96523 -13.75959 -13.17470 -13.11491 -13.00462 -12.82516 -12.76633 -12.66321 -12.49275 -12.08112 -11.75761 -11.17443 -10.96582 -10.80256 -10.38461 -9.39327 -9.22620 -8.80015 -8.07233 -6.19306 1.39050 1.39827 1.42688 1.46858 2.16011 2.23930 2.41655 3.20241 3.42088 3.96458 4.05070 4.28846 4.37518 4.40054 4.46937 4.56399 4.66872 4.70077 4.84853 4.87826 4.88917 4.94968 5.16091 5.23460 5.38467 5.50291 5.55213 5.59365 5.62989 5.79347 5.98522 6.21162 6.29471 6.38809 6.48276 6.63676 6.70137 6.89342 7.46831 8.97661 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.008139 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.171371 B = 3439.301780 C = 3976.069112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.453 5.453 3 C -0.016 4.016 4 C -0.221 4.221 5 C -0.192 4.192 6 C 0.001 3.999 7 C 0.182 3.818 8 H 0.029 0.971 9 C -0.079 4.079 10 C 0.039 3.961 11 H -0.010 1.010 12 C -0.515 4.515 13 H 0.050 0.950 14 C 0.017 3.983 15 N -0.915 5.915 16 Si 0.944 3.056 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.102 4.102 21 C 0.085 3.915 22 N -0.672 5.672 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.260 0.740 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 13.160 -4.609 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.129 5.129 3 C -0.146 4.146 4 C -0.246 4.246 5 C -0.217 4.217 6 C -0.111 4.111 7 C 0.071 3.929 8 H 0.047 0.953 9 C -0.118 4.118 10 C 0.021 3.979 11 H 0.008 0.992 12 C -0.553 4.553 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.555 5.555 16 Si 0.770 3.230 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.140 4.140 21 C -0.044 4.044 22 N -0.304 5.304 23 H 0.093 0.907 24 H 0.131 0.869 25 H 0.089 0.911 26 H 0.210 0.790 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.122 12.845 -4.071 13.641 hybrid contribution -1.681 -0.545 -0.629 1.876 sum 0.441 12.300 -4.700 13.175 Atomic orbital electron populations 1.22164 0.76498 1.04982 1.03839 1.44114 1.06887 1.05573 1.56373 1.22286 0.90275 0.92059 1.09991 1.21152 0.96992 0.94588 1.11855 1.20761 0.95255 0.95470 1.10187 1.20338 0.91200 0.88302 1.11221 1.19420 0.92686 0.86035 0.94729 0.95291 1.21418 0.98644 0.97139 0.94562 1.18717 0.94110 0.91005 0.94111 0.99210 1.21295 0.99921 0.92542 1.41524 0.93212 1.25639 1.00917 0.95659 0.95944 1.69999 1.38512 0.98455 1.48550 0.85828 0.81080 0.76994 0.79065 1.19756 1.21160 1.19786 1.21424 0.96227 1.01283 0.95056 1.21641 0.97078 0.88163 0.97529 1.60230 1.49426 1.02113 1.18610 0.90731 0.86870 0.91141 0.79019 0.83195 0.85309 0.94179 0.93730 0.93090 0.95398 0.91538 0.96517 0.91079 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.91 127.77 1.39 2.94 16 2 N -0.45 -13.16 3.15 -533.25 -1.68 -14.84 16 3 C -0.02 -0.41 11.43 83.21 0.95 0.54 16 4 C -0.22 -6.10 10.86 22.14 0.24 -5.86 16 5 C -0.19 -6.36 10.35 22.14 0.23 -6.13 16 6 C 0.00 0.04 5.85 41.08 0.24 0.28 16 7 C 0.18 7.12 2.46 44.19 0.11 7.23 16 8 H 0.03 1.24 5.55 -2.39 -0.01 1.22 16 9 C -0.08 -3.50 4.82 30.65 0.15 -3.35 16 10 C 0.04 2.00 2.61 -11.46 -0.03 1.97 16 11 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 12 C -0.51 -27.48 6.74 25.60 0.17 -27.31 16 13 H 0.05 2.60 6.86 -2.91 -0.02 2.58 16 14 C 0.02 0.92 5.30 84.66 0.45 1.37 16 15 N -0.92 -52.25 11.32 21.45 0.24 -52.00 16 16 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 C -0.10 -4.92 5.41 30.65 0.17 -4.75 16 21 C 0.08 3.56 6.34 86.33 0.55 4.11 16 22 N -0.67 -25.41 6.15 -495.57 -3.05 -28.46 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.85 6.95 -2.38 -0.02 1.83 16 26 H 0.19 3.18 8.06 -2.91 -0.02 3.15 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 3.59 6.04 -2.38 -0.01 3.57 16 34 H 0.02 0.77 7.31 -2.38 -0.02 0.75 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.34 11.42 8.78 -89.70 -0.79 10.63 16 Total: -1.00 -61.39 285.52 2.43 -58.95 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.27 Total: 20.68 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 4.62 Total: -28.96 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -4.48 Total: -95.30 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -61.39 2.43 -58.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.492 kcal (2) G-P(sol) polarization free energy of solvation -61.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds