Wall clock time and date at job start Mon Mar 30 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36347 * 125.63725 * 2 1 4 4 C 1.34857 * 108.21676 * 179.73536 * 3 2 1 5 5 C 1.40892 * 107.41605 * 0.26469 * 4 3 2 6 6 C 1.34853 * 107.41781 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.88614 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.45771 * 155.25904 * 7 6 5 9 9 C 1.53039 * 109.46049 * 275.22465 * 7 6 5 10 10 C 1.53119 * 109.27577 * 179.19893 * 9 7 6 11 11 H 1.08992 * 109.52364 * 62.25390 * 10 9 7 12 12 C 1.50698 * 109.57224 * 182.41101 * 10 9 7 13 13 H 1.07996 * 120.00465 * 359.71152 * 12 10 9 14 14 C 1.37885 * 120.00131 * 179.71377 * 12 10 9 15 15 N 1.31509 * 119.99642 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00154 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46966 * 90.00172 * 16 14 12 18 18 H 1.48499 * 109.47253 * 209.99857 * 16 14 12 19 19 H 1.48497 * 109.47295 * 330.00447 * 16 14 12 20 20 C 1.53119 * 109.16055 * 302.34315 * 10 9 7 21 21 C 1.53034 * 109.27578 * 57.65919 * 20 10 9 22 22 N 1.46846 * 109.46497 * 35.28043 * 7 6 5 23 23 H 1.09000 * 109.46907 * 95.24260 * 1 2 3 24 24 H 1.08999 * 109.47473 * 215.24517 * 1 2 3 25 25 H 1.09005 * 109.46921 * 335.25028 * 1 2 3 26 26 H 1.07994 * 125.88941 * 0.02562 * 3 2 1 27 27 H 1.07991 * 126.28670 * 180.28765 * 4 3 2 28 28 H 1.07992 * 126.28872 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.50481 * 299.13749 * 9 7 6 30 30 H 1.08999 * 109.50414 * 59.25614 * 9 7 6 31 31 H 0.97006 * 120.00127 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.50817 * 297.71602 * 20 10 9 33 33 H 1.09002 * 109.50001 * 177.59749 * 20 10 9 34 34 H 1.09008 * 109.46171 * 180.80415 * 21 20 10 35 35 H 1.09000 * 109.45648 * 60.83068 * 21 20 10 36 36 H 1.00895 * 110.99676 * 302.33623 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0059 5 6 3.5460 -0.7045 0.0035 6 6 2.2593 -1.1081 -0.0044 7 6 1.7818 -2.5375 -0.0090 8 1 0.7790 -2.5866 0.4154 9 6 1.7531 -3.0608 -1.4468 10 6 1.2867 -4.5192 -1.4446 11 1 0.2719 -4.5765 -1.0510 12 6 1.3125 -5.0596 -2.8512 13 1 1.6254 -4.4257 -3.6676 14 6 0.9366 -6.3635 -3.0958 15 7 0.5550 -7.1353 -2.1018 16 14 0.9679 -7.0331 -4.8394 17 1 2.3004 -7.6268 -5.1177 18 1 -0.0792 -8.0754 -4.9882 19 1 0.7077 -5.9294 -5.7982 20 6 2.2256 -5.3459 -0.5616 21 6 2.2405 -4.7563 0.8505 22 7 2.6942 -3.3607 0.7949 23 1 -0.3633 -0.0939 -1.0234 24 1 -0.3634 -0.8393 0.5930 25 1 -0.3633 0.9333 0.4303 26 1 1.9172 2.1324 0.0004 27 1 4.4165 1.3436 0.0118 28 1 4.4164 -1.3437 0.0065 29 1 1.0640 -2.4592 -2.0394 30 1 2.7529 -2.9991 -1.8765 31 1 0.2902 -8.0525 -2.2739 32 1 3.2328 -5.3202 -0.9774 33 1 1.8739 -6.3768 -0.5218 34 1 2.9191 -5.3340 1.4781 35 1 1.2355 -4.7950 1.2708 36 1 3.6385 -3.3012 0.4445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:36 Heat of formation + Delta-G solvation = 39.556724 kcal Electronic energy + Delta-G solvation = -16767.128273 eV Core-core repulsion = 14251.389853 eV Total energy + Delta-G solvation = -2515.738420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95529 -37.80595 -33.30610 -32.57423 -30.94615 -30.31126 -27.18996 -26.12500 -25.23153 -22.37354 -21.79685 -20.22809 -19.10311 -18.71459 -17.01854 -16.05476 -15.02499 -14.73296 -14.33156 -14.27421 -13.39090 -13.33181 -12.96831 -12.79188 -12.53400 -12.04960 -11.93158 -11.88783 -11.71104 -11.37107 -11.08240 -10.86490 -10.67219 -10.30895 -10.08738 -9.52742 -9.34286 -8.91444 -8.41589 -8.27828 -7.80374 -7.42261 -6.00706 -4.08316 2.58692 3.21853 3.27865 3.34765 3.37820 3.40199 4.40939 4.85598 4.92930 5.22991 5.27739 5.33529 5.38832 5.50561 5.69436 5.89210 5.99151 6.04556 6.07905 6.37062 6.47032 6.47454 6.58808 6.69424 6.74359 6.99714 7.07738 7.32639 7.37229 7.49034 7.63324 7.68236 7.77104 7.93257 7.97922 8.13296 8.41818 8.95207 9.56683 11.03681 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.006573 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.270616 B = 4258.852604 C = 4545.089909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.448 5.448 3 C -0.031 4.031 4 C -0.201 4.201 5 C -0.197 4.197 6 C 0.046 3.954 7 C 0.155 3.845 8 H 0.073 0.927 9 C -0.128 4.128 10 C 0.051 3.949 11 H 0.024 0.976 12 C -0.513 4.513 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.146 4.146 21 C 0.055 3.945 22 N -0.678 5.678 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 11.443 5.103 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.124 5.124 3 C -0.160 4.160 4 C -0.226 4.226 5 C -0.221 4.221 6 C -0.066 4.066 7 C 0.044 3.956 8 H 0.092 0.908 9 C -0.168 4.168 10 C 0.033 3.967 11 H 0.042 0.958 12 C -0.552 4.552 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.185 4.185 21 C -0.074 4.074 22 N -0.307 5.307 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.469 11.432 5.758 12.809 hybrid contribution 0.188 -0.664 -1.938 2.057 sum 0.657 10.768 3.820 11.444 Atomic orbital electron populations 1.21974 0.77906 1.03791 1.03319 1.43828 1.05841 1.05753 1.56996 1.21629 0.90665 0.90944 1.12795 1.20788 0.95610 0.95175 1.11015 1.20510 0.95327 0.94619 1.11627 1.20408 0.90351 0.88480 1.07366 1.19934 0.96032 0.85668 0.93988 0.90845 1.22303 1.01047 0.99613 0.93795 1.18664 0.94609 0.88097 0.95337 0.95831 1.21187 1.44352 0.96734 0.92877 0.92852 1.24959 0.95087 0.97025 0.96844 1.69873 1.45082 1.07427 1.30522 0.86630 0.77733 0.78730 0.85127 1.20682 1.21220 1.19997 1.22283 0.99243 1.03997 0.92976 1.22128 0.99898 0.87071 0.98311 1.60772 1.05294 1.10151 1.54479 0.90978 0.89960 0.90213 0.82761 0.85286 0.85193 0.93493 0.92863 0.93030 0.94591 0.88714 0.92199 0.91996 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.84 59.85 0.65 1.48 16 2 N -0.45 -6.68 3.15 -119.90 -0.38 -7.05 16 3 C -0.03 -0.43 11.42 -16.74 -0.19 -0.63 16 4 C -0.20 -2.97 10.86 -39.78 -0.43 -3.40 16 5 C -0.20 -3.27 10.15 -39.78 -0.40 -3.67 16 6 C 0.05 0.79 5.94 -81.79 -0.49 0.30 16 7 C 0.15 2.83 2.69 -68.87 -0.18 2.65 16 8 H 0.07 1.36 7.02 -51.93 -0.36 1.00 16 9 C -0.13 -2.69 4.57 -26.65 -0.12 -2.82 16 10 C 0.05 1.26 2.17 -91.65 -0.20 1.06 16 11 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.51 -14.07 8.57 -34.44 -0.30 -14.36 16 13 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.14 11.35 55.43 0.63 -24.51 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.15 -3.35 5.10 -26.65 -0.14 -3.48 16 21 C 0.05 1.05 6.55 -3.83 -0.03 1.03 16 22 N -0.68 -12.22 6.38 -107.98 -0.69 -12.91 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 0.94 7.14 -51.93 -0.37 0.57 16 25 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.13 2.05 7.42 -52.49 -0.39 1.66 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 2.44 6.15 -51.93 -0.32 2.13 16 34 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.34 5.85 7.74 -39.29 -0.30 5.54 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -29.36 288.65 -8.54 -37.90 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.52 Total: 6.21 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.92 Total: -20.23 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.44 Total: -44.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.36 -8.54 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.457 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds