Wall clock time and date at job start Mon Mar 30 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.82939 * 2 1 4 4 C 1.54690 * 110.77061 * 123.36348 * 2 1 3 5 5 C 1.51321 * 102.65233 * 93.02321 * 4 2 1 6 6 C 1.39623 * 107.92631 * 15.73651 * 5 4 2 7 7 N 1.33109 * 118.36081 * 180.48784 * 6 5 4 8 8 C 1.33314 * 120.86060 * 0.31194 * 7 6 5 9 9 C 1.41566 * 119.03870 * 179.60544 * 8 7 6 10 10 H 1.08001 * 119.99664 * 349.97289 * 9 8 7 11 11 C 1.40042 * 120.00055 * 169.97229 * 9 8 7 12 12 N 1.30699 * 119.99676 * 163.85527 * 11 9 8 13 13 Si 1.86797 * 120.00270 * 343.85954 * 11 9 8 14 14 H 1.48501 * 109.47344 * 89.99607 * 13 11 9 15 15 H 1.48503 * 109.47274 * 329.99765 * 13 11 9 16 16 H 1.48499 * 109.47062 * 209.99747 * 13 11 9 17 17 N 1.33407 * 121.93021 * 359.32113 * 8 7 6 18 18 C 1.32895 * 120.45560 * 0.55561 * 17 8 7 19 19 N 1.38607 * 120.52816 * 179.97438 * 18 17 8 20 20 N 1.38784 * 110.99115 * 0.90040 * 6 5 4 21 21 C 1.46900 * 111.00053 * 219.64000 * 20 6 5 22 22 H 1.09008 * 109.47010 * 181.91368 * 1 2 3 23 23 H 1.09002 * 109.46868 * 301.91063 * 1 2 3 24 24 H 1.08993 * 109.47094 * 61.91663 * 1 2 3 25 25 H 1.09001 * 110.76729 * 334.73621 * 4 2 1 26 26 H 1.08995 * 110.77584 * 211.31842 * 4 2 1 27 27 H 0.96996 * 120.00073 * 2.71720 * 12 11 9 28 28 H 0.97004 * 119.99524 * 359.97438 * 19 18 17 29 29 H 0.96993 * 120.00068 * 180.02562 * 19 18 17 30 30 H 1.09008 * 109.46727 * 59.87304 * 21 20 6 31 31 H 1.09000 * 109.47190 * 179.86827 * 21 20 6 32 32 H 1.08996 * 109.47103 * 299.87527 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0786 -0.7954 1.2080 5 6 2.2689 -2.1821 0.6329 6 6 2.2308 -2.0790 -0.7590 7 7 2.3688 -3.1899 -1.4793 8 6 2.5332 -4.3729 -0.8870 9 6 2.6678 -5.5307 -1.6904 10 1 2.4764 -5.4766 -2.7520 11 6 3.0492 -6.7462 -1.1087 12 7 2.8731 -7.8658 -1.7595 13 14 3.8094 -6.7673 0.5975 14 1 2.7368 -6.9016 1.6157 15 1 4.5516 -5.5012 0.8244 16 1 4.7441 -7.9158 0.7087 17 7 2.5801 -4.4970 0.4404 18 6 2.4514 -3.4296 1.2217 19 7 2.4994 -3.5569 2.6011 20 7 2.0546 -0.7607 -1.1553 21 6 1.1406 -0.6733 -2.3020 22 1 -0.3633 -1.0272 0.0343 23 1 -0.3633 0.5432 0.8724 24 1 -0.3633 0.4837 -0.9066 25 1 1.3538 -0.8106 2.0220 26 1 3.0297 -0.3820 1.5434 27 1 2.5149 -7.8517 -2.6608 28 1 2.6274 -4.4302 3.0034 29 1 2.4043 -2.7728 3.1640 30 1 0.1716 -1.0900 -2.0268 31 1 1.0184 0.3707 -2.5905 32 1 1.5535 -1.2358 -3.1393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:00 Heat of formation + Delta-G solvation = 46.044141 kcal Electronic energy + Delta-G solvation = -16779.719356 eV Core-core repulsion = 14160.721908 eV Total energy + Delta-G solvation = -2618.997448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40813 -37.73946 -34.76700 -33.44714 -31.51888 -31.10509 -29.45864 -27.57782 -25.42925 -24.39161 -21.93724 -20.92619 -19.76149 -18.41604 -17.17274 -16.20636 -15.36683 -15.22212 -14.94485 -13.94051 -13.59515 -13.37945 -13.03434 -12.93674 -12.75635 -12.39522 -12.13616 -11.75552 -11.37856 -11.14020 -11.07685 -10.84785 -10.65229 -10.39733 -9.76566 -9.43344 -9.01666 -8.80327 -7.66731 -7.52877 -7.38642 -7.20669 -4.88459 2.45656 2.82007 3.52094 3.62221 3.92748 4.06327 4.34477 4.38883 4.59696 4.97450 5.11336 5.25800 5.51134 5.59984 5.65598 5.73685 5.83833 5.88410 5.95624 6.07162 6.19709 6.22606 6.28129 6.42230 6.75949 6.91416 7.23366 7.47486 7.66497 7.82855 7.95693 8.28873 8.41785 8.53096 8.94476 9.92165 10.00852 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.009605 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.018319 B = 2914.428794 C = 3548.379687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.077 3.923 3 H 0.095 0.905 4 C -0.035 4.035 5 C -0.435 4.435 6 C 0.388 3.612 7 N -0.618 5.618 8 C 0.443 3.557 9 C -0.450 4.450 10 H 0.090 0.910 11 C 0.053 3.947 12 N -0.796 5.796 13 Si 1.150 2.850 14 H -0.287 1.287 15 H -0.284 1.284 16 H -0.328 1.328 17 N -0.652 5.652 18 C 0.492 3.508 19 N -0.857 5.857 20 N -0.465 5.465 21 C 0.028 3.972 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.286 0.714 28 H 0.395 0.605 29 H 0.399 0.601 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 11.527 6.182 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 H 0.113 0.887 4 C -0.074 4.074 5 C -0.450 4.450 6 C 0.142 3.858 7 N -0.344 5.344 8 C 0.206 3.794 9 C -0.487 4.487 10 H 0.108 0.892 11 C -0.170 4.170 12 N -0.418 5.418 13 Si 0.983 3.017 14 H -0.215 1.215 15 H -0.211 1.211 16 H -0.261 1.261 17 N -0.387 5.387 18 C 0.246 3.754 19 N -0.401 5.401 20 N -0.182 5.182 21 C -0.120 4.120 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.224 0.776 29 H 0.227 0.773 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.180 9.898 6.331 11.950 hybrid contribution -1.404 1.495 -0.315 2.075 sum -3.584 11.394 6.017 13.374 Atomic orbital electron populations 1.22302 0.95959 1.02509 1.02007 1.22769 0.93459 0.97747 0.89069 0.88680 1.20604 0.99215 0.91919 0.95652 1.20285 1.34939 0.94154 0.95648 1.19922 0.88230 0.88354 0.89269 1.68141 1.30128 0.96691 1.39464 1.19373 0.86021 0.89522 0.84458 1.20396 1.39720 0.91845 0.96691 0.89175 1.27689 0.91713 0.90290 1.07349 1.70615 1.29361 1.28893 1.12957 0.82016 0.75574 0.72667 0.71433 1.21459 1.21101 1.26064 1.67170 1.35689 1.29157 1.06665 1.17493 0.85438 0.87905 0.84534 1.42035 1.83163 1.11797 1.03135 1.60029 1.43963 1.07157 1.07081 1.22379 0.94698 1.01347 0.93533 0.92241 0.91783 0.92058 0.92419 0.92150 0.90280 0.77641 0.77314 0.94404 0.91647 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 7.90 37.16 0.29 -1.90 16 2 C 0.08 1.15 3.90 -66.25 -0.26 0.89 16 3 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 4 C -0.04 -0.56 6.29 -26.69 -0.17 -0.73 16 5 C -0.43 -9.31 6.24 -103.46 -0.65 -9.95 16 6 C 0.39 9.00 6.83 -154.44 -1.06 7.95 16 7 N -0.62 -16.56 10.16 -11.86 -0.12 -16.68 16 8 C 0.44 12.41 7.07 -158.48 -1.12 11.29 16 9 C -0.45 -12.89 9.73 -37.64 -0.37 -13.25 16 10 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 11 C 0.05 1.46 5.51 -17.36 -0.10 1.37 16 12 N -0.80 -21.80 13.65 55.55 0.76 -21.05 16 13 Si 1.15 28.24 25.89 -169.99 -4.40 23.84 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -7.16 6.59 56.52 0.37 -6.79 16 16 H -0.33 -7.86 7.11 56.52 0.40 -7.45 16 17 N -0.65 -17.05 5.13 -12.07 -0.06 -17.11 16 18 C 0.49 11.13 7.81 -154.97 -1.21 9.92 16 19 N -0.86 -14.79 9.06 31.14 0.28 -14.50 16 20 N -0.47 -8.80 5.26 -171.35 -0.90 -9.70 16 21 C 0.03 0.46 8.20 60.06 0.49 0.95 16 22 H 0.06 0.93 7.88 -51.92 -0.41 0.52 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.71 6.71 -51.93 -0.35 0.36 16 25 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.29 7.52 8.72 -40.82 -0.36 7.16 16 28 H 0.40 6.48 8.95 -40.82 -0.37 6.11 16 29 H 0.40 5.41 8.59 -40.82 -0.35 5.06 16 30 H 0.04 0.62 6.48 -51.92 -0.34 0.29 16 31 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 32 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 263.18 15.07 3.97 3.97 Total: -1.00 -31.75 263.18 -8.54 -40.29 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.92 Total: 4.42 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -4.13 Total: 6.52 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -0.04 Total: -79.05 kcal Atomic # 14 Polarization: 28.24 SS G_CDS: -4.40 Total: 23.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.75 -8.54 -40.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.334 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds