Wall clock time and date at job start Mon Mar 30 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.82939 * 2 1 4 4 C 1.54690 * 110.77061 * 123.36348 * 2 1 3 5 5 C 1.51321 * 102.65233 * 93.02321 * 4 2 1 6 6 C 1.39623 * 107.92631 * 15.73651 * 5 4 2 7 7 N 1.33109 * 118.36081 * 180.48784 * 6 5 4 8 8 C 1.33314 * 120.86060 * 0.31194 * 7 6 5 9 9 C 1.41566 * 119.03870 * 179.60544 * 8 7 6 10 10 H 1.08001 * 119.99664 * 349.97289 * 9 8 7 11 11 C 1.40042 * 120.00055 * 169.97229 * 9 8 7 12 12 N 1.30699 * 119.99676 * 163.85527 * 11 9 8 13 13 Si 1.86797 * 120.00270 * 343.85954 * 11 9 8 14 14 H 1.48501 * 109.47344 * 89.99607 * 13 11 9 15 15 H 1.48503 * 109.47274 * 329.99765 * 13 11 9 16 16 H 1.48499 * 109.47062 * 209.99747 * 13 11 9 17 17 N 1.33407 * 121.93021 * 359.32113 * 8 7 6 18 18 C 1.32895 * 120.45560 * 0.55561 * 17 8 7 19 19 N 1.38607 * 120.52816 * 179.97438 * 18 17 8 20 20 N 1.38784 * 110.99115 * 0.90040 * 6 5 4 21 21 C 1.46900 * 111.00053 * 219.64000 * 20 6 5 22 22 H 1.09008 * 109.47010 * 181.91368 * 1 2 3 23 23 H 1.09002 * 109.46868 * 301.91063 * 1 2 3 24 24 H 1.08993 * 109.47094 * 61.91663 * 1 2 3 25 25 H 1.09001 * 110.76729 * 334.73621 * 4 2 1 26 26 H 1.08995 * 110.77584 * 211.31842 * 4 2 1 27 27 H 0.96996 * 120.00073 * 2.71720 * 12 11 9 28 28 H 0.97004 * 119.99524 * 359.97438 * 19 18 17 29 29 H 0.96993 * 120.00068 * 180.02562 * 19 18 17 30 30 H 1.09008 * 109.46727 * 59.87304 * 21 20 6 31 31 H 1.09000 * 109.47190 * 179.86827 * 21 20 6 32 32 H 1.08996 * 109.47103 * 299.87527 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0786 -0.7954 1.2080 5 6 2.2689 -2.1821 0.6329 6 6 2.2308 -2.0790 -0.7590 7 7 2.3688 -3.1899 -1.4793 8 6 2.5332 -4.3729 -0.8870 9 6 2.6678 -5.5307 -1.6904 10 1 2.4764 -5.4766 -2.7520 11 6 3.0492 -6.7462 -1.1087 12 7 2.8731 -7.8658 -1.7595 13 14 3.8094 -6.7673 0.5975 14 1 2.7368 -6.9016 1.6157 15 1 4.5516 -5.5012 0.8244 16 1 4.7441 -7.9158 0.7087 17 7 2.5801 -4.4970 0.4404 18 6 2.4514 -3.4296 1.2217 19 7 2.4994 -3.5569 2.6011 20 7 2.0546 -0.7607 -1.1553 21 6 1.1406 -0.6733 -2.3020 22 1 -0.3633 -1.0272 0.0343 23 1 -0.3633 0.5432 0.8724 24 1 -0.3633 0.4837 -0.9066 25 1 1.3538 -0.8106 2.0220 26 1 3.0297 -0.3820 1.5434 27 1 2.5149 -7.8517 -2.6608 28 1 2.6274 -4.4302 3.0034 29 1 2.4043 -2.7728 3.1640 30 1 0.1716 -1.0900 -2.0268 31 1 1.0184 0.3707 -2.5905 32 1 1.5535 -1.2358 -3.1393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259929534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:00 Heat of formation + Delta-G solvation = 22.850704 kcal Electronic energy + Delta-G solvation = -16780.725099 eV Core-core repulsion = 14160.721908 eV Total energy + Delta-G solvation = -2620.003191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.03837 -39.39287 -36.51569 -35.38212 -32.89889 -32.81712 -31.08356 -29.26036 -26.90093 -25.94649 -23.54507 -22.78520 -21.24734 -20.29241 -18.88878 -17.85309 -16.83703 -16.74849 -16.39408 -15.79622 -15.21038 -14.91195 -14.77035 -14.58242 -14.33255 -14.14677 -13.65502 -12.95059 -12.88548 -12.66268 -12.54512 -12.35612 -12.11775 -11.97162 -11.80399 -11.22427 -10.89431 -10.67047 -9.54564 -9.38870 -9.33191 -8.84282 -6.96376 0.59524 0.99343 1.53433 1.68176 1.98284 2.42436 2.53598 2.64038 2.83887 3.62483 3.74694 3.88451 3.98041 4.16751 4.28802 4.45090 4.47549 4.51197 4.71310 4.77673 4.84873 4.93798 5.06801 5.23929 5.29987 5.36069 5.36540 5.78850 5.85494 5.97212 6.20250 6.44994 6.56231 6.71557 7.25768 7.87447 8.05464 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.009605 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.018319 B = 2914.428794 C = 3548.379687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.132 0.868 4 C -0.032 4.032 5 C -0.426 4.426 6 C 0.366 3.634 7 N -0.657 5.657 8 C 0.439 3.561 9 C -0.492 4.492 10 H 0.061 0.939 11 C 0.028 3.972 12 N -0.816 5.816 13 Si 1.189 2.811 14 H -0.275 1.275 15 H -0.296 1.296 16 H -0.319 1.319 17 N -0.671 5.671 18 C 0.472 3.528 19 N -0.832 5.832 20 N -0.473 5.473 21 C 0.031 3.969 22 H 0.026 0.974 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.282 0.718 28 H 0.403 0.597 29 H 0.419 0.581 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 14.717 8.848 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 H 0.150 0.850 4 C -0.070 4.070 5 C -0.441 4.441 6 C 0.123 3.877 7 N -0.385 5.385 8 C 0.197 3.803 9 C -0.529 4.529 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.439 5.439 13 Si 1.019 2.981 14 H -0.202 1.202 15 H -0.224 1.224 16 H -0.252 1.252 17 N -0.407 5.407 18 C 0.226 3.774 19 N -0.378 5.378 20 N -0.190 5.190 21 C -0.116 4.116 22 H 0.045 0.955 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.232 0.768 29 H 0.251 0.749 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.728 13.169 9.059 16.215 hybrid contribution -1.284 0.819 -1.079 1.866 sum -4.012 13.988 7.980 16.596 Atomic orbital electron populations 1.22272 0.94339 1.01114 1.04413 1.23105 0.94818 0.98534 0.86575 0.85003 1.20796 1.01114 0.88250 0.96882 1.20938 1.31411 0.96262 0.95498 1.20517 0.87690 0.89170 0.90310 1.68064 1.31902 0.97706 1.40861 1.19369 0.85756 0.89750 0.85390 1.20289 1.43497 0.93451 0.95703 0.92055 1.28539 0.91426 0.89802 1.09332 1.70636 1.31199 1.28940 1.13137 0.81513 0.75242 0.72103 0.69234 1.20158 1.22398 1.25154 1.67095 1.36495 1.30942 1.06132 1.17890 0.85387 0.87847 0.86270 1.41905 1.81487 1.13311 1.01131 1.60120 1.44916 1.04799 1.09213 1.22402 0.93672 1.03546 0.91961 0.95484 0.88551 0.90556 0.89389 0.90438 0.90745 0.76815 0.74850 0.94729 0.87359 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 7.90 71.98 0.57 -2.91 16 2 C 0.08 1.89 3.90 45.29 0.18 2.07 16 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.03 -0.87 6.29 30.62 0.19 -0.68 16 5 C -0.43 -17.22 6.24 -19.11 -0.12 -17.34 16 6 C 0.37 16.71 6.83 133.04 0.91 17.62 16 7 N -0.66 -36.24 10.16 -191.43 -1.95 -38.19 16 8 C 0.44 25.39 7.07 135.20 0.96 26.35 16 9 C -0.49 -29.85 9.73 23.53 0.23 -29.62 16 10 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 11 C 0.03 1.59 5.51 85.30 0.47 2.06 16 12 N -0.82 -46.58 13.65 21.84 0.30 -46.28 16 13 Si 1.19 58.16 25.89 68.60 1.78 59.93 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.30 -14.87 6.59 99.48 0.66 -14.21 16 16 H -0.32 -14.93 7.11 99.48 0.71 -14.22 16 17 N -0.67 -35.12 5.13 -192.09 -0.99 -36.10 16 18 C 0.47 20.50 7.81 133.05 1.04 21.53 16 19 N -0.83 -26.07 9.06 -55.40 -0.50 -26.57 16 20 N -0.47 -16.74 5.26 -696.03 -3.66 -20.40 16 21 C 0.03 0.96 8.20 127.69 1.05 2.01 16 22 H 0.03 0.75 7.88 -2.38 -0.02 0.73 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.41 6.71 -2.39 -0.02 1.39 16 25 H 0.09 1.92 7.91 -2.39 -0.02 1.90 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.28 15.73 8.72 -92.71 -0.81 14.92 16 28 H 0.40 11.98 8.95 -92.71 -0.83 11.15 16 29 H 0.42 9.54 8.59 -92.71 -0.80 8.75 16 30 H 0.03 1.10 6.48 -2.38 -0.02 1.08 16 31 H 0.11 2.42 7.95 -2.39 -0.02 2.40 16 32 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 Total: -1.00 -72.96 263.18 -0.10 -73.06 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.55 Total: 13.45 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.47 Total: 21.09 kcal Atomic # 7 Polarization: -160.75 SS G_CDS: -6.79 Total: -167.54 kcal Atomic # 14 Polarization: 58.16 SS G_CDS: 1.78 Total: 59.93 kcal Total: -72.96 -0.10 -73.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.915 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds