Wall clock time and date at job start Mon Mar 30 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36228 * 125.88695 * 2 1 4 4 H 0.97001 * 125.61100 * 0.02562 * 3 2 1 5 5 C 1.36728 * 108.78038 * 180.02562 * 3 2 1 6 6 C 1.34653 * 108.08352 * 0.02562 * 5 3 2 7 7 C 1.34763 * 125.88484 * 180.02562 * 2 1 3 8 8 C 1.50710 * 126.29179 * 359.94880 * 7 2 1 9 9 H 1.08997 * 109.46826 * 180.02562 * 8 7 2 10 10 C 1.50708 * 109.46804 * 60.02877 * 8 7 2 11 11 H 1.08000 * 119.99631 * 264.87678 * 10 8 7 12 12 C 1.37875 * 119.99850 * 84.87742 * 10 8 7 13 13 N 1.31518 * 120.00177 * 5.91761 * 12 10 8 14 14 Si 1.86801 * 119.99945 * 185.92221 * 12 10 8 15 15 H 1.48494 * 109.47178 * 89.99718 * 14 12 10 16 16 H 1.48496 * 109.47044 * 210.00392 * 14 12 10 17 17 H 1.48501 * 109.46820 * 330.00214 * 14 12 10 18 18 C 1.52999 * 109.47018 * 300.02873 * 8 7 2 19 19 N 1.46907 * 109.46808 * 185.40424 * 18 8 7 20 20 C 1.51286 * 110.42829 * 179.97438 * 6 5 3 21 21 C 1.54455 * 105.05660 * 343.06138 * 20 6 5 22 22 C 1.51409 * 141.64111 * 180.02562 * 5 3 2 23 23 H 1.09011 * 109.46885 * 269.96916 * 1 2 3 24 24 H 1.09002 * 109.47568 * 29.96819 * 1 2 3 25 25 H 1.08993 * 109.47370 * 149.97555 * 1 2 3 26 26 H 0.96995 * 119.99803 * 179.97438 * 13 12 10 27 27 H 1.08996 * 109.47098 * 305.40455 * 18 8 7 28 28 H 1.08999 * 109.47248 * 65.41060 * 18 8 7 29 29 H 1.00898 * 110.99396 * 56.04549 * 19 18 8 30 30 H 1.00891 * 110.99660 * 180.02562 * 19 18 8 31 31 H 1.09000 * 110.34708 * 101.98688 * 20 6 5 32 32 H 1.09004 * 110.34736 * 224.13741 * 20 6 5 33 33 H 1.08994 * 110.94427 * 143.84180 * 21 20 6 34 34 H 1.09001 * 110.94075 * 267.53252 * 21 20 6 35 35 H 1.09003 * 110.33592 * 315.77164 * 22 5 3 36 36 H 1.08999 * 110.33332 * 77.91349 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3056 1.1037 0.0000 4 1 1.9977 2.0236 0.0004 5 6 3.6124 0.7015 -0.0006 6 6 3.6353 -0.6448 -0.0015 7 6 2.2969 -1.0918 -0.0005 8 6 1.8356 -2.5266 0.0000 9 1 2.7028 -3.1870 -0.0002 10 6 1.0052 -2.7876 -1.2303 11 1 -0.0711 -2.7133 -1.1810 12 6 1.6196 -3.1213 -2.4187 13 7 2.9183 -3.3258 -2.4528 14 14 0.6074 -3.2826 -3.9804 15 1 0.5458 -1.9681 -4.6683 16 1 1.2390 -4.2824 -4.8785 17 1 -0.7674 -3.7256 -3.6355 18 6 0.9932 -2.7911 1.2495 19 7 0.6520 -4.2183 1.3168 20 6 5.0618 -1.1486 -0.0028 21 6 5.9150 0.0634 -0.4371 22 6 5.0235 1.2503 -0.0005 23 1 -0.3633 -0.0006 1.0278 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5142 26 1 3.3505 -3.5609 -3.2887 27 1 1.5612 -2.5110 2.1366 28 1 0.0782 -2.2006 1.2024 29 1 1.4831 -4.7901 1.2963 30 1 0.0949 -4.4187 2.1338 31 1 5.3492 -1.4757 0.9965 32 1 5.1745 -1.9660 -0.7152 33 1 6.8693 0.0769 0.0894 34 1 6.0671 0.0660 -1.5165 35 1 5.1109 2.0707 -0.7129 36 1 5.2991 1.5864 0.9991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260145528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:37 Heat of formation + Delta-G solvation = 41.982496 kcal Electronic energy + Delta-G solvation = -17093.539812 eV Core-core repulsion = 14577.906582 eV Total energy + Delta-G solvation = -2515.633230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60700 -35.73831 -34.81712 -32.08872 -30.67712 -29.44035 -27.54774 -26.35011 -24.46825 -23.79553 -20.85235 -20.03212 -18.13052 -17.82417 -16.22547 -15.97706 -15.01396 -14.63395 -14.17718 -13.51060 -13.26235 -12.90880 -12.56491 -12.21104 -12.09302 -11.98295 -11.68485 -11.44728 -11.14917 -10.83127 -10.63205 -10.51098 -10.47123 -10.33794 -10.23052 -10.10084 -9.32722 -8.74823 -8.18213 -7.58662 -7.20690 -6.63084 -5.75210 -3.72237 3.16052 3.44446 3.50829 3.54243 3.93337 4.14042 4.65263 5.29289 5.34413 5.51240 5.53847 5.73057 5.89201 6.00826 6.02757 6.12932 6.24510 6.29569 6.31285 6.45656 6.52686 6.57881 6.73835 6.82859 6.95715 7.09948 7.14046 7.30969 7.69930 7.89693 8.11083 8.13591 8.30496 8.37601 8.42859 8.62967 8.72451 9.29052 9.85847 11.33735 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.010565 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.809493 B = 2649.714348 C = 2988.886470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.003 4.003 3 N -0.553 5.553 4 H 0.394 0.606 5 C -0.059 4.059 6 C -0.155 4.155 7 C -0.070 4.070 8 C 0.100 3.900 9 H 0.053 0.947 10 C -0.472 4.472 11 H 0.054 0.946 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.880 3.120 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.275 1.275 18 C 0.077 3.923 19 N -0.834 5.834 20 C -0.049 4.049 21 C -0.114 4.114 22 C -0.026 4.026 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.254 0.746 27 H -0.008 1.008 28 H 0.056 0.944 29 H 0.334 0.666 30 H 0.316 0.684 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 7.155 6.378 9.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 N -0.149 5.149 4 H 0.228 0.772 5 C -0.171 4.171 6 C -0.162 4.162 7 C -0.077 4.077 8 C 0.080 3.920 9 H 0.071 0.929 10 C -0.510 4.510 11 H 0.072 0.928 12 C -0.136 4.136 13 N -0.526 5.526 14 Si 0.709 3.291 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.200 1.200 18 C -0.053 4.053 19 N -0.361 5.361 20 C -0.087 4.087 21 C -0.152 4.152 22 C -0.064 4.064 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.064 0.936 27 H 0.010 0.990 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.662 7.357 5.554 9.367 hybrid contribution -0.116 0.574 -0.235 0.631 sum 1.546 7.930 5.319 9.673 Atomic orbital electron populations 1.20333 0.89081 1.03218 1.00689 1.19812 0.92506 0.84964 1.13893 1.41040 1.04187 1.07219 1.62451 0.77230 1.20692 0.85772 0.96020 1.14582 1.20103 0.94292 0.92838 1.08994 1.19509 0.89468 0.96135 1.02563 1.17340 0.95388 0.87793 0.91466 0.92924 1.20773 0.92316 1.44832 0.93125 0.92810 1.24874 0.94712 0.95485 0.98522 1.69942 1.08726 1.48174 1.25742 0.86797 0.80708 0.77316 0.84321 1.21319 1.21694 1.20032 1.21942 0.98613 0.87766 0.97012 1.58560 1.25453 1.06551 1.45526 1.20352 0.90539 0.97393 1.00374 1.22347 0.97090 0.94742 1.01015 1.20449 0.88174 0.97589 1.00210 0.93152 0.93878 0.88252 0.93628 0.99020 0.92563 0.85390 0.87391 0.92667 0.90386 0.91438 0.91331 0.92666 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 8.80 36.01 0.32 -1.08 16 2 C 0.00 -0.07 6.98 -81.87 -0.57 -0.64 16 3 N -0.55 -10.45 6.08 -5.22 -0.03 -10.48 16 4 H 0.39 5.96 8.96 -40.82 -0.37 5.59 16 5 C -0.06 -1.17 8.04 -81.33 -0.65 -1.83 16 6 C -0.15 -3.48 6.87 -104.52 -0.72 -4.20 16 7 C -0.07 -1.66 4.87 -104.76 -0.51 -2.17 16 8 C 0.10 2.49 2.14 -92.92 -0.20 2.29 16 9 H 0.05 1.48 7.52 -51.93 -0.39 1.09 16 10 C -0.47 -12.85 6.71 -34.44 -0.23 -13.08 16 11 H 0.05 1.48 6.81 -52.49 -0.36 1.12 16 12 C 0.06 1.84 5.45 -17.82 -0.10 1.74 16 13 N -0.89 -25.97 12.92 55.43 0.72 -25.26 16 14 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.08 1.65 5.93 -3.82 -0.02 1.63 16 19 N -0.83 -16.53 9.35 -10.37 -0.10 -16.62 16 20 C -0.05 -0.96 6.78 -26.83 -0.18 -1.15 16 21 C -0.11 -1.80 7.15 -25.06 -0.18 -1.98 16 22 C -0.03 -0.40 6.80 -26.62 -0.18 -0.59 16 23 H 0.05 0.82 7.95 -51.92 -0.41 0.41 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.10 2.06 5.35 -51.93 -0.28 1.78 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H -0.01 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.06 1.18 6.22 -51.93 -0.32 0.86 16 29 H 0.33 6.51 8.99 -39.29 -0.35 6.16 16 30 H 0.32 5.17 9.08 -39.30 -0.36 4.82 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -31.30 290.06 -8.65 -39.95 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.35 Total: 11.97 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -3.23 Total: -21.05 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.59 Total: -52.36 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.30 -8.65 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.928 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds