Wall clock time and date at job start Mon Mar 30 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36228 * 125.88695 * 2 1 4 4 H 0.97001 * 125.61100 * 0.02562 * 3 2 1 5 5 C 1.36728 * 108.78038 * 180.02562 * 3 2 1 6 6 C 1.34653 * 108.08352 * 0.02562 * 5 3 2 7 7 C 1.34763 * 125.88484 * 180.02562 * 2 1 3 8 8 C 1.50710 * 126.29179 * 359.94880 * 7 2 1 9 9 H 1.08997 * 109.46826 * 180.02562 * 8 7 2 10 10 C 1.50708 * 109.46804 * 60.02877 * 8 7 2 11 11 H 1.08000 * 119.99631 * 264.87678 * 10 8 7 12 12 C 1.37875 * 119.99850 * 84.87742 * 10 8 7 13 13 N 1.31518 * 120.00177 * 5.91761 * 12 10 8 14 14 Si 1.86801 * 119.99945 * 185.92221 * 12 10 8 15 15 H 1.48494 * 109.47178 * 89.99718 * 14 12 10 16 16 H 1.48496 * 109.47044 * 210.00392 * 14 12 10 17 17 H 1.48501 * 109.46820 * 330.00214 * 14 12 10 18 18 C 1.52999 * 109.47018 * 300.02873 * 8 7 2 19 19 N 1.46907 * 109.46808 * 185.40424 * 18 8 7 20 20 C 1.51286 * 110.42829 * 179.97438 * 6 5 3 21 21 C 1.54455 * 105.05660 * 343.06138 * 20 6 5 22 22 C 1.51409 * 141.64111 * 180.02562 * 5 3 2 23 23 H 1.09011 * 109.46885 * 269.96916 * 1 2 3 24 24 H 1.09002 * 109.47568 * 29.96819 * 1 2 3 25 25 H 1.08993 * 109.47370 * 149.97555 * 1 2 3 26 26 H 0.96995 * 119.99803 * 179.97438 * 13 12 10 27 27 H 1.08996 * 109.47098 * 305.40455 * 18 8 7 28 28 H 1.08999 * 109.47248 * 65.41060 * 18 8 7 29 29 H 1.00898 * 110.99396 * 56.04549 * 19 18 8 30 30 H 1.00891 * 110.99660 * 180.02562 * 19 18 8 31 31 H 1.09000 * 110.34708 * 101.98688 * 20 6 5 32 32 H 1.09004 * 110.34736 * 224.13741 * 20 6 5 33 33 H 1.08994 * 110.94427 * 143.84180 * 21 20 6 34 34 H 1.09001 * 110.94075 * 267.53252 * 21 20 6 35 35 H 1.09003 * 110.33592 * 315.77164 * 22 5 3 36 36 H 1.08999 * 110.33332 * 77.91349 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3056 1.1037 0.0000 4 1 1.9977 2.0236 0.0004 5 6 3.6124 0.7015 -0.0006 6 6 3.6353 -0.6448 -0.0015 7 6 2.2969 -1.0918 -0.0005 8 6 1.8356 -2.5266 0.0000 9 1 2.7028 -3.1870 -0.0002 10 6 1.0052 -2.7876 -1.2303 11 1 -0.0711 -2.7133 -1.1810 12 6 1.6196 -3.1213 -2.4187 13 7 2.9183 -3.3258 -2.4528 14 14 0.6074 -3.2826 -3.9804 15 1 0.5458 -1.9681 -4.6683 16 1 1.2390 -4.2824 -4.8785 17 1 -0.7674 -3.7256 -3.6355 18 6 0.9932 -2.7911 1.2495 19 7 0.6520 -4.2183 1.3168 20 6 5.0618 -1.1486 -0.0028 21 6 5.9150 0.0634 -0.4371 22 6 5.0235 1.2503 -0.0005 23 1 -0.3633 -0.0006 1.0278 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3634 -0.8897 -0.5142 26 1 3.3505 -3.5609 -3.2887 27 1 1.5612 -2.5110 2.1366 28 1 0.0782 -2.2006 1.2024 29 1 1.4831 -4.7901 1.2963 30 1 0.0949 -4.4187 2.1338 31 1 5.3492 -1.4757 0.9965 32 1 5.1745 -1.9660 -0.7152 33 1 6.8693 0.0769 0.0894 34 1 6.0671 0.0660 -1.5165 35 1 5.1109 2.0707 -0.7129 36 1 5.2991 1.5864 0.9991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:37 Heat of formation + Delta-G solvation = 20.809642 kcal Electronic energy + Delta-G solvation = -17094.457936 eV Core-core repulsion = 14577.906582 eV Total energy + Delta-G solvation = -2516.551354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16349 -37.30875 -36.48002 -34.07970 -32.38152 -30.92389 -29.25804 -27.85674 -26.25248 -25.53490 -22.56804 -21.46570 -19.80496 -19.49376 -18.20611 -17.50299 -16.56020 -16.35930 -16.01011 -15.23239 -14.79745 -14.59322 -14.03945 -13.93824 -13.68408 -13.46858 -13.18769 -13.10904 -12.86788 -12.63963 -12.51486 -12.22293 -12.12613 -11.88057 -11.80351 -11.60641 -11.28497 -10.71536 -10.34203 -9.23075 -8.86635 -8.23695 -7.87330 -5.90602 1.42328 1.43716 1.52614 1.61003 2.41459 2.48074 2.57887 3.43560 3.94223 4.02444 4.10157 4.28464 4.42774 4.57832 4.69096 4.71031 4.76468 4.85380 4.91291 4.94222 5.00034 5.16201 5.22546 5.30447 5.39592 5.43567 5.53390 5.62593 5.86141 6.05947 6.09627 6.41009 6.53109 6.64950 6.78702 6.94165 7.14830 7.22889 7.68823 9.18579 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.010565 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.809493 B = 2649.714348 C = 2988.886470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 N -0.541 5.541 4 H 0.415 0.585 5 C -0.048 4.048 6 C -0.209 4.209 7 C -0.115 4.115 8 C 0.106 3.894 9 H 0.007 0.993 10 C -0.466 4.466 11 H 0.049 0.951 12 C 0.012 3.988 13 N -0.917 5.917 14 Si 0.934 3.066 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.268 1.268 18 C 0.087 3.913 19 N -0.842 5.842 20 C -0.050 4.050 21 C -0.104 4.104 22 C -0.020 4.020 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.249 0.751 27 H -0.003 1.003 28 H 0.063 0.937 29 H 0.334 0.666 30 H 0.338 0.662 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 9.378 6.995 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 N -0.138 5.138 4 H 0.252 0.748 5 C -0.161 4.161 6 C -0.216 4.216 7 C -0.122 4.122 8 C 0.086 3.914 9 H 0.026 0.974 10 C -0.504 4.504 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.762 3.238 15 H -0.213 1.213 16 H -0.219 1.219 17 H -0.192 1.192 18 C -0.043 4.043 19 N -0.371 5.371 20 C -0.088 4.088 21 C -0.142 4.142 22 C -0.058 4.058 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.015 0.985 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.286 9.598 6.188 11.492 hybrid contribution -0.028 -0.135 -0.354 0.380 sum 1.258 9.464 5.834 11.188 Atomic orbital electron populations 1.20303 0.87311 1.03178 1.02093 1.20080 0.93715 0.85075 1.12953 1.40989 1.03797 1.07836 1.61191 0.74779 1.21387 0.87396 0.95470 1.11820 1.20562 0.94870 0.94879 1.11318 1.19568 0.91161 0.96018 1.05416 1.17138 0.93710 0.88321 0.92184 0.97443 1.21005 0.92175 1.43250 0.93989 0.93256 1.25542 0.95587 0.96155 1.01261 1.70103 1.10030 1.49874 1.25821 0.85924 0.79655 0.76996 0.81216 1.21319 1.21862 1.19231 1.21743 0.98242 0.88727 0.95607 1.58493 1.25797 1.05758 1.47093 1.20382 0.90710 0.98000 0.99737 1.22356 0.98094 0.92688 1.01047 1.20592 0.84916 0.97716 1.02552 0.90969 0.91259 0.90826 0.94211 0.98532 0.91861 0.85392 0.84963 0.91993 0.94511 0.87782 0.92050 0.90281 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.50 8.80 71.24 0.63 -1.88 16 2 C -0.01 -0.34 6.98 41.08 0.29 -0.06 16 3 N -0.54 -19.18 6.08 -170.44 -1.04 -20.21 16 4 H 0.41 11.15 8.96 -92.71 -0.83 10.32 16 5 C -0.05 -1.81 8.04 41.20 0.33 -1.47 16 6 C -0.21 -9.50 6.87 -19.80 -0.14 -9.64 16 7 C -0.11 -5.54 4.87 -19.96 -0.10 -5.64 16 8 C 0.11 5.47 2.14 -12.28 -0.03 5.44 16 9 H 0.01 0.44 7.52 -2.39 -0.02 0.42 16 10 C -0.47 -25.87 6.71 25.60 0.17 -25.70 16 11 H 0.05 2.73 6.81 -2.91 -0.02 2.71 16 12 C 0.01 0.68 5.45 84.65 0.46 1.14 16 13 N -0.92 -55.97 12.92 21.45 0.28 -55.69 16 14 Si 0.93 46.27 29.54 68.60 2.03 48.29 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 16 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 18 C 0.09 3.77 5.93 86.30 0.51 4.29 16 19 N -0.84 -33.40 9.35 -186.71 -1.75 -35.15 16 20 C -0.05 -2.03 6.78 30.53 0.21 -1.82 16 21 C -0.10 -3.08 7.15 31.68 0.23 -2.85 16 22 C -0.02 -0.54 6.80 30.66 0.21 -0.34 16 23 H 0.07 2.19 7.95 -2.38 -0.02 2.17 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 2.98 5.35 -2.39 -0.01 2.97 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 2.62 6.22 -2.39 -0.01 2.61 16 29 H 0.33 13.31 8.99 -89.70 -0.81 12.50 16 30 H 0.34 10.74 9.08 -89.70 -0.81 9.93 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.89 290.06 0.95 -68.93 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -1.34 Total: 32.35 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 2.77 Total: -38.52 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -2.51 Total: -111.05 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.89 0.95 -68.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.742 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds