Wall clock time and date at job start Mon Mar 30 2020 03:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38304 * 119.96425 * 2 1 4 4 C 1.38265 * 120.15629 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07114 * 0.02562 * 4 3 2 6 6 C 1.38896 * 119.92283 * 0.23666 * 5 4 3 7 7 N 1.39679 * 120.06985 * 179.74502 * 6 5 4 8 8 C 1.46903 * 110.99821 * 299.99586 * 7 6 5 9 9 C 1.46893 * 111.00294 * 63.95193 * 7 6 5 10 10 C 1.38082 * 119.96492 * 180.02562 * 2 1 3 11 11 C 1.50700 * 120.03819 * 359.97438 * 10 2 1 12 12 H 1.09005 * 109.47036 * 13.29408 * 11 10 2 13 13 N 1.46895 * 109.47398 * 133.29044 * 11 10 2 14 14 C 1.50698 * 109.47068 * 253.29464 * 11 10 2 15 15 H 1.07999 * 120.00151 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99894 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00278 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99817 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47422 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46914 * 120.00376 * 18 16 14 21 21 H 1.48504 * 109.47420 * 240.00290 * 18 16 14 22 22 H 1.08993 * 109.47097 * 95.33245 * 1 2 3 23 23 H 1.08998 * 109.46471 * 215.32848 * 1 2 3 24 24 H 1.08992 * 109.47236 * 335.32589 * 1 2 3 25 25 H 1.08005 * 119.92205 * 0.02958 * 3 2 1 26 26 H 1.07998 * 119.96313 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.03698 * 179.97438 * 5 4 3 28 28 H 1.08996 * 109.47036 * 63.95490 * 8 7 6 29 29 H 1.08997 * 109.46770 * 183.95850 * 8 7 6 30 30 H 1.09003 * 109.46872 * 303.95739 * 8 7 6 31 31 H 1.09007 * 109.47166 * 56.04677 * 9 7 6 32 32 H 1.09000 * 109.47311 * 176.03954 * 9 7 6 33 33 H 1.08999 * 109.47363 * 296.04328 * 9 7 6 34 34 H 1.00906 * 110.99491 * 68.73347 * 13 11 10 35 35 H 1.00900 * 111.00399 * 192.68221 * 13 11 10 36 36 H 0.97001 * 120.00459 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0098 -0.0016 6 6 3.5860 -1.1953 -0.0071 7 7 4.2868 -2.4035 -0.0136 8 6 5.1432 -2.5090 -1.2025 9 6 5.0727 -2.5629 1.2171 10 6 2.1967 -1.1963 -0.0005 11 6 1.4433 -2.5014 -0.0005 12 1 0.3953 -2.3160 -0.2364 13 7 2.0205 -3.4001 -1.0090 14 6 1.5464 -3.1409 1.3601 15 1 2.1015 -2.6511 2.1464 16 6 0.9310 -4.3509 1.6015 17 7 0.2545 -4.9472 0.6443 18 14 1.0594 -5.1440 3.2879 19 1 1.8700 -4.2783 4.1817 20 1 -0.3003 -5.3110 3.8612 21 1 1.7101 -6.4729 3.1619 22 1 -0.3633 -0.0955 -1.0231 23 1 -0.3632 -0.8384 0.5943 24 1 -0.3633 0.9338 0.4290 25 1 1.6559 2.1325 0.0005 26 1 4.1167 2.1402 -0.0010 27 1 5.3565 0.0141 -0.0024 28 1 5.9055 -1.7305 -1.1714 29 1 5.6234 -3.4873 -1.2187 30 1 4.5361 -2.3873 -2.0995 31 1 4.4143 -2.4806 2.0820 32 1 5.5524 -3.5417 1.2178 33 1 5.8346 -1.7849 1.2651 34 1 2.9449 -3.7009 -0.7385 35 1 1.4171 -4.1914 -1.1760 36 1 -0.1781 -5.7987 0.8140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:22 Heat of formation + Delta-G solvation = 35.675611 kcal Electronic energy + Delta-G solvation = -17313.540369 eV Core-core repulsion = 14797.633652 eV Total energy + Delta-G solvation = -2515.906717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49576 -36.17122 -34.45513 -31.84118 -30.78429 -28.87045 -27.08903 -26.17644 -25.64351 -23.92293 -22.35232 -19.67399 -19.63755 -16.45629 -16.03821 -15.39306 -14.82516 -14.41316 -14.38475 -13.55203 -13.32836 -13.06695 -12.92744 -12.52379 -12.04013 -11.93665 -11.70199 -11.46609 -11.27260 -11.15879 -11.12709 -10.93812 -10.69157 -10.54274 -10.32242 -9.80077 -9.33753 -8.52072 -7.91333 -7.72639 -7.65572 -6.86223 -5.90702 -4.03778 1.97761 2.18868 3.28119 3.36775 3.40756 4.37379 4.51157 4.52165 5.31237 5.44937 5.50189 5.63709 5.73449 5.76092 5.88956 5.99754 6.00798 6.08931 6.27254 6.33877 6.34729 6.38675 6.44872 6.77015 6.83778 6.97928 7.17391 7.20560 7.31262 7.49280 7.56753 7.91214 7.94752 8.17139 8.37842 8.92041 9.26905 9.51368 9.70067 11.05923 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.010862 C = 0.009032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.637273 B = 2577.278821 C = 3099.416858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.138 4.138 5 C -0.163 4.163 6 C 0.098 3.902 7 N -0.479 5.479 8 C 0.032 3.968 9 C 0.035 3.965 10 C -0.002 4.002 11 C 0.248 3.752 12 H 0.042 0.958 13 N -0.853 5.853 14 C -0.514 4.514 15 H 0.049 0.951 16 C 0.064 3.936 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.016 0.984 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.016 0.984 34 H 0.339 0.661 35 H 0.339 0.661 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 7.242 -1.459 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.156 4.156 5 C -0.183 4.183 6 C 0.004 3.996 7 N -0.199 5.199 8 C -0.115 4.115 9 C -0.112 4.112 10 C -0.003 4.003 11 C 0.138 3.862 12 H 0.060 0.940 13 N -0.387 5.387 14 C -0.554 4.554 15 H 0.068 0.932 16 C -0.137 4.137 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.212 1.212 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.806 7.284 -2.012 9.530 hybrid contribution 0.763 -0.522 1.880 2.095 sum 6.569 6.761 -0.132 9.428 Atomic orbital electron populations 1.20762 0.91597 1.02254 1.02073 1.19752 0.96091 0.92395 1.00872 1.20883 0.94007 0.97036 1.02764 1.20667 0.94184 0.96869 1.03925 1.21462 0.98959 0.93618 1.04290 1.18525 0.92830 0.87319 1.00879 1.59282 1.26707 1.31847 1.02039 1.22414 0.95281 1.00013 0.93793 1.22376 0.95994 0.99828 0.93015 1.20405 0.92096 0.96378 0.91453 1.17855 0.92416 0.85567 0.90371 0.93994 1.59539 1.08250 1.23625 1.47262 1.21705 1.31574 1.04625 0.97513 0.93248 1.24926 0.94992 0.97175 0.96641 1.69795 1.34784 1.17130 1.32007 0.86587 0.77617 0.79206 0.84807 1.19998 1.21222 1.21203 0.91845 0.90029 0.92911 0.87179 0.87435 0.87670 0.96545 0.91699 0.90742 0.90905 0.91691 0.96591 0.84484 0.84740 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.08 36.01 0.33 -1.66 16 2 C -0.09 -1.79 5.88 -104.65 -0.62 -2.41 16 3 C -0.13 -2.23 9.67 -39.55 -0.38 -2.61 16 4 C -0.14 -2.29 10.04 -39.61 -0.40 -2.69 16 5 C -0.16 -2.90 8.66 -39.38 -0.34 -3.24 16 6 C 0.10 1.99 4.49 -83.78 -0.38 1.62 16 7 N -0.48 -9.17 1.94 -186.86 -0.36 -9.54 16 8 C 0.03 0.52 8.73 60.07 0.52 1.04 16 9 C 0.03 0.61 9.33 60.06 0.56 1.17 16 10 C 0.00 -0.04 4.90 -104.42 -0.51 -0.55 16 11 C 0.25 6.21 2.40 -70.02 -0.17 6.04 16 12 H 0.04 1.13 5.97 -51.93 -0.31 0.82 16 13 N -0.85 -20.92 8.89 -6.65 -0.06 -20.98 16 14 C -0.51 -13.79 8.32 -34.44 -0.29 -14.08 16 15 H 0.05 1.37 7.44 -52.49 -0.39 0.98 16 16 C 0.06 1.72 5.39 -17.82 -0.10 1.63 16 17 N -0.90 -24.93 11.68 55.43 0.65 -24.29 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 24 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 25 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 26 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.11 1.67 7.08 -52.49 -0.37 1.30 16 28 H 0.02 0.24 7.26 -51.93 -0.38 -0.14 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 31 H 0.07 1.41 7.82 -51.92 -0.41 1.01 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.24 7.47 -51.93 -0.39 -0.15 16 34 H 0.34 8.12 5.69 -39.29 -0.22 7.90 16 35 H 0.34 8.90 7.37 -39.29 -0.29 8.61 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -28.11 288.05 -7.41 -35.52 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.19 Total: 14.44 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.76 Total: -15.74 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.23 Total: -54.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.11 -7.41 -35.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.192 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds