Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32394 * 120.51473 * 2 1 4 4 C 1.32524 * 120.75650 * 179.72183 * 3 2 1 5 5 N 1.38436 * 119.15375 * 179.97438 * 4 3 2 6 6 C 1.36988 * 120.00158 * 359.97438 * 5 4 3 7 7 H 1.08003 * 119.99528 * 0.02562 * 6 5 4 8 8 C 1.38836 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31544 * 119.99644 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00176 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.47111 * 90.00123 * 10 8 6 12 12 H 1.48497 * 109.47249 * 210.00131 * 10 8 6 13 13 H 1.48500 * 109.47276 * 330.00508 * 10 8 6 14 14 N 1.32647 * 121.68904 * 359.97438 * 4 3 2 15 15 C 1.32001 * 120.56086 * 0.02562 * 14 4 3 16 16 C 1.38288 * 120.51671 * 179.71980 * 2 1 3 17 17 C 1.50898 * 132.83160 * 0.26849 * 16 2 1 18 18 N 1.48114 * 105.66957 * 162.66290 * 17 16 2 19 19 C 1.46893 * 111.00366 * 268.01783 * 18 17 16 20 20 C 1.48103 * 103.95389 * 27.42183 * 18 17 16 21 21 H 1.08998 * 109.47163 * 89.99980 * 1 2 3 22 22 H 1.09004 * 109.47028 * 210.00346 * 1 2 3 23 23 H 1.09006 * 109.47177 * 329.99821 * 1 2 3 24 24 H 0.96997 * 120.00264 * 180.02562 * 5 4 3 25 25 H 0.97001 * 120.00215 * 180.02562 * 9 8 6 26 26 H 1.09003 * 110.21035 * 43.61195 * 17 16 2 27 27 H 1.09003 * 110.27280 * 281.75415 * 17 16 2 28 28 H 1.08996 * 109.47377 * 174.96368 * 19 18 17 29 29 H 1.08994 * 109.47519 * 294.97134 * 19 18 17 30 30 H 1.09012 * 109.46819 * 54.96695 * 19 18 17 31 31 H 1.09005 * 110.19959 * 213.48469 * 20 18 17 32 32 H 1.09002 * 110.26676 * 91.65002 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1792 1.1406 0.0000 4 6 3.5044 1.1462 0.0055 5 7 4.1737 2.3580 0.0048 6 6 3.4664 3.5311 -0.0021 7 1 2.3866 3.5106 -0.0066 8 6 4.1377 4.7464 -0.0034 9 7 3.4584 5.8729 -0.0095 10 14 6.0052 4.7819 0.0051 11 1 6.5066 4.7863 -1.3928 12 1 6.4740 6.0060 0.7029 13 1 6.5200 3.5815 0.7116 14 7 4.2060 0.0204 0.0117 15 6 3.5963 -1.1504 0.0121 16 6 2.2092 -1.1913 0.0058 17 6 1.7768 -2.6370 0.0077 18 7 2.9681 -3.4114 -0.4105 19 6 2.9807 -3.6132 -1.8655 20 6 4.1093 -2.5707 0.0187 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 5.1435 2.3765 0.0084 25 1 3.9274 6.7220 -0.0108 26 1 0.9622 -2.7874 -0.7008 27 1 1.4649 -2.9367 1.0083 28 1 3.9087 -4.1057 -2.1559 29 1 2.1335 -4.2355 -2.1534 30 1 2.9094 -2.6478 -2.3668 31 1 4.9380 -2.6749 -0.6817 32 1 4.4282 -2.8510 1.0226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = 53.158137 kcal Electronic energy + Delta-G solvation = -16205.389996 eV Core-core repulsion = 13586.701034 eV Total energy + Delta-G solvation = -2618.688962 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20086 -39.31584 -37.07114 -35.16127 -34.03285 -32.04705 -29.87378 -29.23690 -27.55887 -26.07777 -23.61512 -22.78059 -21.82263 -20.34277 -18.42422 -18.25409 -16.82784 -16.55065 -16.15352 -15.71262 -15.44418 -15.07720 -14.62282 -14.45834 -14.11158 -14.02278 -13.66361 -13.33571 -13.12707 -12.90072 -12.86313 -12.53709 -12.48584 -12.11860 -11.91059 -11.57104 -11.14904 -10.75250 -9.79614 -9.78375 -9.15038 -8.52389 -5.94481 0.33027 0.44536 1.23496 1.28130 1.32519 2.10550 2.27343 2.72430 3.01102 3.14744 3.24629 3.74879 3.80588 4.05764 4.21392 4.42158 4.50863 4.62409 4.72536 4.75628 4.79692 4.82741 4.96471 5.03711 5.04625 5.10953 5.39351 5.60596 5.63879 5.92013 5.98537 6.40481 6.50387 6.91073 7.17675 7.78523 8.62624 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.037581 B = 0.006912 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.877911 B = 4049.830884 C = 4629.505608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.220 3.780 3 N -0.600 5.600 4 C 0.510 3.490 5 N -0.551 5.551 6 C -0.300 4.300 7 H 0.089 0.911 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.950 3.050 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.253 1.253 14 N -0.604 5.604 15 C 0.166 3.834 16 C -0.351 4.351 17 C 0.114 3.886 18 N -0.495 5.495 19 C 0.009 3.991 20 C 0.096 3.904 21 H 0.091 0.909 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.394 0.606 25 H 0.282 0.718 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.009 0.991 31 H 0.098 0.902 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 -17.856 -1.281 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 N -0.327 5.327 4 C 0.154 3.846 5 N -0.170 5.170 6 C -0.430 4.430 7 H 0.107 0.893 8 C -0.208 4.208 9 N -0.556 5.556 10 Si 0.771 3.229 11 H -0.184 1.184 12 H -0.188 1.188 13 H -0.178 1.178 14 N -0.330 5.330 15 C 0.013 3.987 16 C -0.363 4.363 17 C -0.015 4.015 18 N -0.216 5.216 19 C -0.139 4.139 20 C -0.033 4.033 21 H 0.110 0.890 22 H 0.127 0.873 23 H 0.084 0.916 24 H 0.231 0.769 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.028 0.972 31 H 0.116 0.884 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.591 -16.967 -1.062 17.010 hybrid contribution 0.676 1.161 -0.407 1.403 sum 0.084 -15.806 -1.469 15.874 Atomic orbital electron populations 1.20784 0.86153 1.04256 1.04029 1.21437 0.98254 0.86156 0.87082 1.67957 1.07853 1.30987 1.25885 1.19162 0.85734 0.85803 0.93857 1.40480 1.07042 1.01454 1.68049 1.19248 0.93572 0.81994 1.48199 0.89350 1.25794 1.04262 0.93946 0.96814 1.69781 1.38303 0.98212 1.49266 0.85544 0.78093 0.79408 0.79810 1.18409 1.18824 1.17783 1.66911 1.41593 0.97547 1.26991 1.22996 0.92926 0.94374 0.88392 1.22081 0.96523 0.98599 1.19095 1.21317 0.93468 0.83698 1.03022 1.65425 1.01782 1.39345 1.15042 1.22726 1.04613 0.99886 0.86680 1.21781 0.95173 0.81959 1.04420 0.89030 0.87286 0.91624 0.76896 0.90801 0.88846 0.87932 0.89689 0.88781 0.97190 0.88401 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 10.14 71.23 0.72 -1.91 16 2 C 0.22 8.47 6.82 42.48 0.29 8.76 16 3 N -0.60 -29.61 9.04 -186.06 -1.68 -31.29 16 4 C 0.51 25.81 8.38 261.39 2.19 28.00 16 5 N -0.55 -29.06 5.23 -194.27 -1.02 -30.08 16 6 C -0.30 -17.53 10.17 84.03 0.85 -16.68 16 7 H 0.09 5.79 7.27 -2.91 -0.02 5.76 16 8 C -0.01 -0.40 5.50 84.88 0.47 0.06 16 9 N -0.92 -54.17 13.96 21.65 0.30 -53.87 16 10 Si 0.95 41.47 27.73 68.60 1.90 43.37 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 13 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 14 N -0.60 -27.12 10.46 -185.62 -1.94 -29.06 16 15 C 0.17 6.05 7.44 42.76 0.32 6.37 16 16 C -0.35 -11.70 6.01 -19.66 -0.12 -11.82 16 17 C 0.11 2.60 6.28 85.39 0.54 3.13 16 18 N -0.50 -10.85 5.78 -923.93 -5.34 -16.19 16 19 C 0.01 0.18 9.16 127.69 1.17 1.35 16 20 C 0.10 2.46 6.65 85.42 0.57 3.03 16 21 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.11 2.17 7.86 -2.38 -0.02 2.15 16 23 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.39 19.22 5.87 -92.71 -0.54 18.68 16 25 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.09 1.76 7.80 -2.39 -0.02 1.74 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.01 0.22 8.07 -2.38 -0.02 0.20 16 31 H 0.10 2.29 7.76 -2.38 -0.02 2.27 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -69.91 271.24 -0.25 -70.16 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.53 Total: 26.68 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.00 Total: 20.28 kcal Atomic # 7 Polarization: -150.81 SS G_CDS: -9.68 Total: -160.49 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.90 Total: 43.37 kcal Total: -69.91 -0.25 -70.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.315 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds