Wall clock time and date at job start Mon Mar 30 2020 03:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38128 * 120.03343 * 2 1 4 4 C 1.38265 * 120.06936 * 179.70307 * 3 2 1 5 5 C 1.38306 * 120.15200 * 0.55498 * 4 3 2 6 6 C 1.50700 * 119.96163 * 179.72441 * 5 4 3 7 7 H 1.09007 * 109.47160 * 159.72846 * 6 5 4 8 8 N 1.46901 * 109.47239 * 39.72475 * 6 5 4 9 9 C 1.50702 * 109.47203 * 279.72146 * 6 5 4 10 10 H 1.08003 * 119.99740 * 5.59714 * 9 6 5 11 11 C 1.37871 * 120.00184 * 185.59223 * 9 6 5 12 12 N 1.31521 * 120.00033 * 194.82731 * 11 9 6 13 13 Si 1.86795 * 120.00234 * 14.82758 * 11 9 6 14 14 H 1.48501 * 109.47235 * 180.02562 * 13 11 9 15 15 H 1.48504 * 109.47255 * 60.00015 * 13 11 9 16 16 H 1.48502 * 109.47345 * 300.00208 * 13 11 9 17 17 C 1.38075 * 120.07433 * 359.44861 * 5 4 3 18 18 C 1.38886 * 120.03870 * 179.97438 * 2 1 3 19 19 N 1.39676 * 120.07643 * 359.97438 * 18 2 1 20 20 C 1.46898 * 110.99981 * 120.02103 * 19 18 2 21 21 C 1.46897 * 110.99950 * 243.97681 * 19 18 2 22 22 H 1.09006 * 109.46859 * 270.02022 * 1 2 3 23 23 H 1.08992 * 109.47266 * 30.01858 * 1 2 3 24 24 H 1.08999 * 109.46999 * 150.01937 * 1 2 3 25 25 H 1.07994 * 119.96317 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.92370 * 180.29959 * 4 3 2 27 27 H 1.00907 * 110.99678 * 179.17596 * 8 6 5 28 28 H 1.00895 * 110.99792 * 303.12344 * 8 6 5 29 29 H 0.97003 * 119.99609 * 354.89624 * 12 11 9 30 30 H 1.07999 * 120.04164 * 180.29915 * 17 5 4 31 31 H 1.09007 * 109.47098 * 60.00227 * 20 19 18 32 32 H 1.08995 * 109.46988 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.46972 * 300.00431 * 20 19 18 34 34 H 1.08999 * 109.47128 * 60.00124 * 21 19 18 35 35 H 1.09001 * 109.47053 * 179.97438 * 21 19 18 36 36 H 1.08993 * 109.47119 * 299.99751 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 0.0062 5 6 4.2765 0.0012 0.0008 6 6 5.7835 0.0072 0.0014 7 1 6.1506 -0.9570 0.3530 8 7 6.2687 1.0702 0.8916 9 6 6.2853 0.2557 -1.3978 10 1 5.5870 0.4849 -2.1892 11 6 7.6358 0.1905 -1.6675 12 7 8.1063 0.6832 -2.7925 13 14 8.7975 -0.5976 -0.4351 14 1 10.1863 -0.5413 -0.9579 15 1 8.4057 -2.0140 -0.2212 16 1 8.7241 0.1363 0.8538 17 6 3.5917 -1.1977 0.0008 18 6 2.2023 -1.2023 0.0005 19 7 1.5063 -2.4133 0.0016 20 6 1.8385 -3.2125 -1.1854 21 6 1.7662 -3.1687 1.2344 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6583 2.1310 -0.0004 26 1 4.1192 2.1331 0.0111 27 1 7.2772 1.0861 0.9196 28 1 5.9004 1.9684 0.6165 29 1 7.4963 1.0253 -3.4647 30 1 4.1353 -2.1309 0.0015 31 1 2.9078 -3.4239 -1.1935 32 1 1.2826 -4.1497 -1.1596 33 1 1.5712 -2.6565 -2.0841 34 1 1.4463 -2.5811 2.0949 35 1 1.2119 -4.1069 1.2093 36 1 2.8328 -3.3786 1.3139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260444679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:53 Heat of formation + Delta-G solvation = 26.971455 kcal Electronic energy + Delta-G solvation = -16632.419909 eV Core-core repulsion = 14116.135751 eV Total energy + Delta-G solvation = -2516.284158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64676 -36.65651 -34.75565 -32.28123 -31.03505 -29.48810 -27.45373 -26.97586 -25.23573 -24.10493 -21.80778 -21.12534 -19.13329 -17.71215 -16.23534 -15.59530 -15.07591 -14.86606 -14.65383 -13.85428 -13.53882 -13.21756 -13.15918 -12.90100 -12.44856 -12.29029 -12.16536 -11.94907 -11.74181 -11.59838 -11.44045 -11.11357 -10.69026 -10.54808 -10.18338 -10.04842 -9.35321 -8.54645 -8.32618 -8.21579 -7.90112 -7.50561 -6.51507 -4.27884 1.86968 2.02383 3.24437 3.32199 3.49030 4.10032 4.31823 4.32266 5.12250 5.25731 5.36028 5.38998 5.47253 5.57685 5.63960 5.67852 5.75496 5.90508 5.95219 5.98271 6.02629 6.05893 6.20788 6.25174 6.34885 6.68623 6.75895 7.01102 7.03003 7.07214 7.28734 7.48886 7.73809 7.85268 8.17187 8.34967 8.47684 8.79013 9.44702 10.77394 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.007545 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938459 B = 3710.387748 C = 4062.898754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.014 4.014 6 C 0.210 3.790 7 H 0.040 0.960 8 N -0.856 5.856 9 C -0.624 4.624 10 H 0.057 0.943 11 C 0.029 3.971 12 N -0.899 5.899 13 Si 1.049 2.951 14 H -0.283 1.283 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.148 4.148 18 C 0.076 3.924 19 N -0.505 5.505 20 C 0.027 3.973 21 C 0.029 3.971 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.330 0.670 28 H 0.325 0.675 29 H 0.269 0.731 30 H 0.111 0.889 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -4.189 6.466 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.126 4.126 5 C -0.015 4.015 6 C 0.101 3.899 7 H 0.058 0.942 8 N -0.388 5.388 9 C -0.664 4.664 10 H 0.075 0.925 11 C -0.177 4.177 12 N -0.533 5.533 13 Si 0.877 3.123 14 H -0.209 1.209 15 H -0.209 1.209 16 H -0.199 1.199 17 C -0.168 4.168 18 C -0.017 4.017 19 N -0.226 5.226 20 C -0.121 4.121 21 C -0.118 4.118 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.114 -4.835 7.318 14.159 hybrid contribution -0.216 0.451 -1.378 1.466 sum -11.331 -4.385 5.940 13.524 Atomic orbital electron populations 1.20524 0.91466 1.01911 1.01338 1.19534 0.95683 0.91493 1.02388 1.20884 0.94220 0.96784 1.01975 1.20915 0.93315 0.98201 1.00199 1.19941 0.96746 0.91942 0.92854 1.18317 0.87264 0.92124 0.92229 0.94195 1.59850 1.13960 1.08436 1.56553 1.22634 0.94762 1.53990 0.94980 0.92516 1.25863 0.97120 0.94243 1.00452 1.70850 1.38161 1.35704 1.08547 0.83945 0.76277 0.76959 0.75143 1.20892 1.20893 1.19884 1.21352 0.93800 0.98225 1.03425 1.18471 0.90092 0.90159 1.02998 1.59625 1.56665 1.03338 1.02932 1.22434 0.99475 0.97316 0.92829 1.22402 0.99628 0.97818 0.91951 0.92337 0.92910 0.91030 0.86687 0.86470 0.85482 0.86328 0.92088 0.87060 0.94866 0.91463 0.91330 0.91402 0.91470 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.77 36.01 0.35 -0.93 16 2 C -0.09 -1.51 5.90 -104.42 -0.62 -2.12 16 3 C -0.12 -2.07 9.70 -39.61 -0.38 -2.45 16 4 C -0.11 -2.14 9.27 -39.55 -0.37 -2.50 16 5 C -0.01 -0.29 4.89 -104.66 -0.51 -0.81 16 6 C 0.21 5.03 2.48 -70.01 -0.17 4.85 16 7 H 0.04 0.98 6.71 -51.93 -0.35 0.64 16 8 N -0.86 -18.97 9.09 -6.65 -0.06 -19.03 16 9 C -0.62 -17.23 9.04 -34.44 -0.31 -17.54 16 10 H 0.06 1.73 7.99 -52.48 -0.42 1.31 16 11 C 0.03 0.83 5.41 -17.82 -0.10 0.73 16 12 N -0.90 -27.04 13.70 55.43 0.76 -26.28 16 13 Si 1.05 24.51 26.42 -169.99 -4.49 20.02 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -5.81 5.62 56.52 0.32 -5.49 16 17 C -0.15 -2.94 8.19 -39.38 -0.32 -3.26 16 18 C 0.08 1.34 4.71 -83.79 -0.39 0.94 16 19 N -0.50 -7.52 3.94 -186.86 -0.74 -8.25 16 20 C 0.03 0.36 9.34 60.06 0.56 0.93 16 21 C 0.03 0.37 9.38 60.06 0.56 0.94 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.12 2.26 6.59 -52.48 -0.35 1.91 16 27 H 0.33 7.39 5.48 -39.29 -0.22 7.17 16 28 H 0.33 6.88 7.21 -39.29 -0.28 6.60 16 29 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 30 H 0.11 2.19 7.00 -52.49 -0.37 1.82 16 31 H 0.03 0.49 7.12 -51.92 -0.37 0.12 16 32 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.03 0.42 7.34 -51.93 -0.38 0.04 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -29.72 289.51 -7.17 -36.90 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.31 Total: 13.51 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.70 Total: -21.23 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.04 Total: -53.56 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.49 Total: 20.02 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.72 -7.17 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.871 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds