Wall clock time and date at job start Mon Mar 30 2020 03:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36983 * 119.99892 * 2 1 4 4 H 1.08005 * 119.99925 * 158.01162 * 3 2 1 5 5 C 1.38832 * 120.00165 * 338.01258 * 3 2 1 6 6 N 1.31534 * 119.99916 * 348.46313 * 5 3 2 7 7 Si 1.86801 * 119.99585 * 168.73989 * 5 3 2 8 8 H 1.48501 * 109.47087 * 90.00573 * 7 5 3 9 9 H 1.48501 * 109.46657 * 209.99653 * 7 5 3 10 10 H 1.48498 * 109.47423 * 329.99701 * 7 5 3 11 11 C 1.38435 * 119.99815 * 180.02562 * 2 1 3 12 12 N 1.32554 * 119.15518 * 180.02562 * 11 2 1 13 13 C 1.32359 * 120.75322 * 179.97438 * 12 11 2 14 14 C 1.38332 * 118.97421 * 359.97438 * 13 12 11 15 15 C 1.38732 * 118.82246 * 0.02562 * 14 13 12 16 16 N 1.32047 * 119.19417 * 359.73567 * 15 14 13 17 17 C 1.51023 * 108.17384 * 180.02562 * 15 14 13 18 18 N 1.48095 * 105.71369 * 17.39955 * 17 15 14 19 19 C 1.46898 * 111.00358 * 213.16397 * 18 17 15 20 20 C 1.48116 * 103.95045 * 332.56513 * 18 17 15 21 21 H 1.08996 * 109.47242 * 86.31506 * 1 2 3 22 22 H 1.09003 * 109.46942 * 206.31486 * 1 2 3 23 23 H 1.08995 * 109.47295 * 326.31219 * 1 2 3 24 24 H 0.96999 * 120.00032 * 179.97438 * 6 5 3 25 25 H 1.08005 * 120.51360 * 179.97438 * 13 12 11 26 26 H 1.09001 * 110.20177 * 136.46544 * 17 15 14 27 27 H 1.08997 * 110.19854 * 258.25970 * 17 15 14 28 28 H 1.08991 * 109.46887 * 59.86970 * 19 18 17 29 29 H 1.08995 * 109.47050 * 179.87493 * 19 18 17 30 30 H 1.09005 * 109.46930 * 299.87582 * 19 18 17 31 31 H 1.08998 * 110.20940 * 268.35918 * 20 18 17 32 32 H 1.09000 * 110.20812 * 146.45830 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.1711 1.2203 0.3502 5 6 1.5315 2.3449 -0.4501 6 7 0.3810 2.2728 -1.0836 7 14 2.3372 4.0056 -0.1630 8 1 3.2240 4.3303 -1.3090 9 1 1.2884 5.0494 -0.0375 10 1 3.1395 3.9573 1.0857 11 6 2.1572 -1.1989 -0.0005 12 7 3.4826 -1.1794 0.0000 13 6 4.1760 -2.3068 0.0000 14 6 3.4963 -3.5116 0.0000 15 6 2.1091 -3.4969 -0.0005 16 7 1.4773 -2.3374 0.0043 17 6 1.6229 -4.9267 0.0002 18 7 2.7815 -5.7441 0.4275 19 6 2.7695 -7.0582 -0.2288 20 6 3.9562 -4.9488 0.0016 21 1 -0.3633 0.0660 -1.0255 22 1 -0.3633 -0.9212 0.4556 23 1 -0.3633 0.8550 0.5700 24 1 -0.0513 3.0823 -1.3978 25 1 5.2559 -2.2864 0.0000 26 1 0.7993 -5.0438 0.7046 27 1 1.3050 -5.2167 -1.0012 28 1 2.8131 -6.9249 -1.3097 29 1 3.6321 -7.6370 0.1010 30 1 1.8541 -7.5879 0.0352 31 1 4.2686 -5.2452 -0.9997 32 1 4.7763 -5.0809 0.7073 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260512708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:40 Heat of formation + Delta-G solvation = 72.605819 kcal Electronic energy + Delta-G solvation = -16201.233246 eV Core-core repulsion = 13583.387599 eV Total energy + Delta-G solvation = -2617.845647 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.96483 -39.31014 -37.48475 -34.39692 -33.90372 -31.97057 -29.39562 -28.55825 -27.70287 -25.56603 -24.05923 -22.62857 -22.17987 -19.50317 -18.35669 -17.96588 -16.81780 -16.55788 -16.08989 -15.74439 -15.57355 -15.03378 -14.67932 -14.29335 -14.08463 -13.81917 -13.36383 -13.25675 -13.09159 -12.92473 -12.69297 -12.44459 -12.31909 -12.10162 -11.40985 -11.39199 -11.33917 -10.63165 -9.69829 -9.54686 -8.85017 -8.37004 -5.88013 0.44569 0.57710 1.40707 1.45533 1.55050 2.12629 2.56472 2.81963 3.00004 3.24014 3.31389 3.77914 3.98252 4.20919 4.27535 4.39760 4.55037 4.65998 4.67968 4.80281 4.85160 4.90951 4.93966 5.09250 5.17270 5.22418 5.39530 5.61622 5.71431 5.98079 6.06053 6.48402 6.51881 7.14629 7.35910 7.91951 8.62859 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.057307 B = 0.006091 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.480747 B = 4596.042584 C = 5000.101155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.421 5.421 3 C -0.316 4.316 4 H 0.096 0.904 5 C -0.014 4.014 6 N -0.901 5.901 7 Si 1.005 2.995 8 H -0.273 1.273 9 H -0.272 1.272 10 H -0.264 1.264 11 C 0.490 3.510 12 N -0.600 5.600 13 C 0.205 3.795 14 C -0.345 4.345 15 C 0.183 3.817 16 N -0.601 5.601 17 C 0.098 3.902 18 N -0.518 5.518 19 C 0.014 3.986 20 C 0.116 3.884 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.274 0.726 25 H 0.185 0.815 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 -12.896 0.894 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.116 5.116 3 C -0.445 4.445 4 H 0.114 0.886 5 C -0.216 4.216 6 N -0.538 5.538 7 Si 0.827 3.173 8 H -0.198 1.198 9 H -0.196 1.196 10 H -0.188 1.188 11 C 0.137 3.863 12 N -0.325 5.325 13 C 0.035 3.965 14 C -0.358 4.358 15 C 0.030 3.970 16 N -0.328 5.328 17 C -0.031 4.031 18 N -0.242 5.242 19 C -0.134 4.134 20 C -0.013 4.013 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.202 0.798 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.540 -11.640 1.382 12.245 hybrid contribution 0.414 0.469 -0.965 1.150 sum 3.954 -11.172 0.417 11.858 Atomic orbital electron populations 1.21167 0.78294 0.99105 1.00617 1.42463 1.05500 1.01067 1.62617 1.19945 0.99591 0.83736 1.41241 0.88629 1.26348 0.97128 1.03495 0.94602 1.70199 1.17758 1.30651 1.35207 0.84756 0.77788 0.75737 0.78988 1.19802 1.19632 1.18831 1.19499 0.85877 0.86103 0.94775 1.68061 1.07167 1.31644 1.25666 1.22620 1.00751 0.85470 0.87652 1.21721 0.96619 0.97940 1.19483 1.22166 0.92599 0.93755 0.88447 1.66891 1.41802 0.97435 1.26654 1.21482 0.95466 0.84596 1.01547 1.65303 1.01303 1.03345 1.54235 1.22711 1.04562 0.89338 0.96802 1.21142 0.93980 0.85888 1.00244 0.94183 0.92834 0.92589 0.91589 0.79781 0.88076 0.89932 0.94431 0.89115 0.89828 0.91634 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.86 8.72 127.77 1.11 8.97 16 2 N -0.42 -23.62 3.11 -547.55 -1.70 -25.32 16 3 C -0.32 -17.95 9.30 84.03 0.78 -17.17 16 4 H 0.10 5.50 7.30 -2.91 -0.02 5.48 16 5 C -0.01 -0.74 5.12 84.88 0.43 -0.31 16 6 N -0.90 -49.38 10.58 21.65 0.23 -49.15 16 7 Si 1.01 42.17 29.57 68.60 2.03 44.19 16 8 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 C 0.49 26.04 8.13 261.39 2.13 28.16 16 12 N -0.60 -29.84 9.22 -197.99 -1.83 -31.67 16 13 C 0.20 7.99 11.30 84.64 0.96 8.94 16 14 C -0.35 -12.30 6.33 -19.66 -0.12 -12.42 16 15 C 0.18 7.27 7.50 42.75 0.32 7.59 16 16 N -0.60 -29.03 9.05 -185.62 -1.68 -30.71 16 17 C 0.10 2.81 6.61 85.43 0.56 3.38 16 18 N -0.52 -12.70 5.76 -923.96 -5.32 -18.02 16 19 C 0.01 0.22 9.35 127.69 1.19 1.42 16 20 C 0.12 2.93 6.61 85.38 0.56 3.49 16 21 H 0.04 2.16 7.46 -2.39 -0.02 2.15 16 22 H 0.05 2.57 7.21 -2.39 -0.02 2.56 16 23 H 0.06 2.92 7.13 -2.39 -0.02 2.90 16 24 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.19 5.46 8.06 -2.91 -0.02 5.43 16 26 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.08 2.11 7.77 -2.39 -0.02 2.10 16 28 H 0.04 0.58 7.91 -2.39 -0.02 0.56 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.44 7.70 -2.39 -0.02 1.42 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -67.09 269.01 0.78 -66.31 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.12 Total: 12.31 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 7.93 Total: 32.06 kcal Atomic # 7 Polarization: -144.57 SS G_CDS: -10.30 Total: -154.87 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.09 0.78 -66.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.914 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds