Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46944 * 2 1 4 4 C 1.50697 * 109.47597 * 119.99688 * 2 1 3 5 5 H 1.07996 * 120.00251 * 120.00170 * 4 2 1 6 6 C 1.37875 * 119.99791 * 300.00817 * 4 2 1 7 7 N 1.31519 * 119.99880 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00079 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47404 * 90.00538 * 8 6 4 10 10 H 1.48502 * 109.47088 * 210.00434 * 8 6 4 11 11 H 1.48496 * 109.47321 * 329.99983 * 8 6 4 12 12 N 1.46507 * 109.47476 * 239.99998 * 2 1 3 13 13 C 1.38423 * 120.00028 * 119.99216 * 12 2 1 14 14 N 1.32730 * 119.65888 * 354.39971 * 13 12 2 15 15 C 1.32384 * 119.45729 * 180.26840 * 14 13 12 16 16 C 1.38749 * 118.83004 * 0.02562 * 15 14 13 17 17 N 1.32169 * 119.29174 * 359.97438 * 16 15 14 18 18 N 1.28745 * 120.48404 * 0.02562 * 17 16 15 19 19 C 1.46494 * 119.99701 * 299.99927 * 12 2 1 20 20 C 1.52999 * 117.49883 * 135.33532 * 19 12 2 21 21 C 1.53003 * 60.00227 * 252.50625 * 20 19 12 22 22 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47540 * 299.99807 * 1 2 3 24 24 H 1.09003 * 109.47573 * 60.00392 * 1 2 3 25 25 H 0.96999 * 119.99718 * 179.97438 * 7 6 4 26 26 H 1.08003 * 120.58357 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.35099 * 180.02562 * 16 15 14 28 28 H 1.09003 * 115.54909 * 281.04208 * 19 12 2 29 29 H 1.09005 * 117.49944 * 359.97438 * 20 19 12 30 30 H 1.09001 * 117.50235 * 145.02243 * 20 19 12 31 31 H 1.08997 * 117.49937 * 252.51036 * 21 20 19 32 32 H 1.09002 * 117.49447 * 107.48372 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6256 1.2798 2.6540 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9954 3.9069 11 1 0.8488 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.8141 -0.0178 -2.1074 14 7 3.0388 1.2808 -1.9501 15 6 3.7960 1.9214 -2.8269 16 6 4.3347 1.2116 -3.8905 17 7 4.0798 -0.0806 -4.0008 18 7 3.3396 -0.6768 -3.1323 19 6 1.6645 -2.0932 -1.4280 20 6 1.2211 -2.4861 -2.8386 21 6 0.1946 -2.4143 -1.7062 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9032 -0.5278 4.4375 26 1 3.9904 2.9780 -2.7167 27 1 4.9562 1.7095 -4.6199 28 1 2.2403 -2.8234 -0.8593 29 1 1.1923 -1.7009 -3.5941 30 1 1.5052 -3.4750 -3.1984 31 1 -0.1964 -3.3560 -1.3211 32 1 -0.5090 -1.5819 -1.7169 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260530344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = 111.331496 kcal Electronic energy + Delta-G solvation = -16711.951054 eV Core-core repulsion = 14095.784678 eV Total energy + Delta-G solvation = -2616.166376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.49807 -39.61678 -36.40889 -35.51186 -34.57400 -33.22796 -30.74001 -27.26263 -26.65350 -25.46409 -23.45643 -23.17482 -21.63833 -19.47285 -18.74542 -18.40334 -17.17819 -16.99555 -16.82250 -16.12097 -15.54873 -15.22940 -14.84718 -14.40763 -14.07245 -13.81217 -13.15434 -13.01076 -12.75982 -12.62103 -12.49336 -12.28478 -12.07464 -11.93939 -11.50251 -11.22559 -11.11644 -11.09392 -10.79849 -10.01264 -8.92131 -8.35142 -6.41055 -0.15078 0.16086 1.28446 1.35632 1.45475 1.67519 2.27360 2.75516 2.87129 3.00128 3.03374 3.35499 3.71105 3.94103 4.05484 4.07202 4.30945 4.35805 4.48491 4.54026 4.64868 4.76198 4.90290 4.93184 5.10943 5.15347 5.24360 5.31655 5.50015 5.89471 5.93875 6.36805 6.55961 6.64479 7.23357 7.77309 8.81510 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.009818 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.616322 B = 2851.194439 C = 3430.859616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.253 3.747 3 H 0.056 0.944 4 C -0.527 4.527 5 H 0.032 0.968 6 C 0.022 3.978 7 N -0.942 5.942 8 Si 0.946 3.054 9 H -0.258 1.258 10 H -0.295 1.295 11 H -0.248 1.248 12 N -0.531 5.531 13 C 0.488 3.512 14 N -0.551 5.551 15 C 0.174 3.826 16 C -0.079 4.079 17 N -0.191 5.191 18 N -0.357 5.357 19 C 0.068 3.932 20 C -0.135 4.135 21 C -0.171 4.171 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.269 0.731 26 H 0.228 0.772 27 H 0.226 0.774 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 5.501 -13.935 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.150 3.850 3 H 0.073 0.927 4 C -0.565 4.565 5 H 0.050 0.950 6 C -0.177 4.177 7 N -0.582 5.582 8 Si 0.772 3.228 9 H -0.184 1.184 10 H -0.223 1.223 11 H -0.172 1.172 12 N -0.243 5.243 13 C 0.131 3.869 14 N -0.279 5.279 15 C -0.005 4.005 16 C -0.253 4.253 17 N -0.039 5.039 18 N -0.216 5.216 19 C -0.036 4.036 20 C -0.173 4.173 21 C -0.209 4.209 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.244 0.756 27 H 0.242 0.758 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.182 4.281 -13.620 14.443 hybrid contribution 0.146 1.228 0.978 1.577 sum -2.036 5.509 -12.642 13.940 Atomic orbital electron populations 1.22563 0.96926 1.02599 0.99793 1.19087 0.91575 0.93391 0.80982 0.92675 1.21313 1.31775 1.12979 0.90470 0.94997 1.25700 0.97115 0.99896 0.94967 1.70025 1.47171 1.42307 0.98673 0.85903 0.79422 0.79829 0.77641 1.18351 1.22277 1.17217 1.45924 1.48152 1.10143 1.20050 1.21093 0.89198 0.87325 0.89292 1.68635 1.19877 1.08319 1.31067 1.24835 0.85819 1.03281 0.86614 1.25290 1.04617 0.93207 1.02148 1.73326 1.03925 1.10318 1.16292 1.73812 1.13635 1.30128 1.04013 1.21303 0.98960 0.81868 1.01484 1.23052 1.01010 1.03150 0.90081 1.23579 0.91296 1.04064 1.01914 0.90811 0.93556 0.92762 0.92229 0.75585 0.75774 0.89078 0.89799 0.86273 0.86234 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.62 7.55 71.98 0.54 -6.07 16 2 C 0.25 11.98 2.25 44.24 0.10 12.08 16 3 H 0.06 2.74 5.86 -2.38 -0.01 2.73 16 4 C -0.53 -29.94 8.95 25.60 0.23 -29.71 16 5 H 0.03 2.05 7.83 -2.91 -0.02 2.03 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 8 Si 0.95 43.60 24.37 68.60 1.67 45.27 16 9 H -0.26 -11.06 6.87 99.48 0.68 -10.38 16 10 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.25 -10.77 6.53 99.48 0.65 -10.12 16 12 N -0.53 -23.17 2.79 -666.69 -1.86 -25.03 16 13 C 0.49 20.10 7.97 261.28 2.08 22.18 16 14 N -0.55 -20.54 9.01 -197.48 -1.78 -22.32 16 15 C 0.17 4.33 11.32 84.73 0.96 5.29 16 16 C -0.08 -1.84 11.35 84.76 0.96 -0.87 16 17 N -0.19 -6.26 11.62 -57.04 -0.66 -6.92 16 18 N -0.36 -13.82 9.10 -59.52 -0.54 -14.36 16 19 C 0.07 2.66 5.30 44.99 0.24 2.90 16 20 C -0.14 -4.18 9.12 30.59 0.28 -3.90 16 21 C -0.17 -5.28 8.62 30.60 0.26 -5.02 16 22 H 0.07 2.91 5.52 -2.38 -0.01 2.89 16 23 H 0.05 1.93 3.27 -2.39 -0.01 1.92 16 24 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.23 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.23 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.09 3.87 8.07 -2.39 -0.02 3.85 16 29 H 0.08 2.76 7.28 -2.38 -0.02 2.74 16 30 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.10 3.09 6.16 -2.39 -0.01 3.08 16 Total: -1.00 -72.41 262.00 4.30 -68.11 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.06 Total: 14.45 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 6.12 Total: -1.43 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -4.54 Total: -126.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -72.41 4.30 -68.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260530344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.442 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds