Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47520 * 85.01980 * 3 2 1 5 5 H 1.48508 * 109.46773 * 205.01966 * 3 2 1 6 6 H 1.48495 * 109.47007 * 325.01578 * 3 2 1 7 7 C 1.40062 * 120.00130 * 180.27117 * 2 1 3 8 8 H 1.07997 * 120.00019 * 186.74821 * 7 2 1 9 9 C 1.41588 * 119.99734 * 6.75110 * 7 2 1 10 10 C 1.40552 * 120.57715 * 186.74238 * 9 7 2 11 11 C 1.39496 * 118.21914 * 179.78259 * 10 9 7 12 12 N 1.38594 * 120.42001 * 180.21472 * 11 10 9 13 13 C 1.48534 * 111.00006 * 62.87661 * 12 11 10 14 14 C 1.54937 * 103.22565 * 159.72512 * 13 12 11 15 15 C 1.54597 * 102.92079 * 322.59090 * 14 13 12 16 16 C 1.47899 * 111.00364 * 180.27964 * 12 11 10 17 17 N 1.32944 * 119.16568 * 0.48756 * 11 10 9 18 18 C 1.32666 * 121.10130 * 359.75069 * 17 11 10 19 19 N 1.38375 * 119.01997 * 180.02562 * 18 17 11 20 20 N 1.32093 * 121.96953 * 359.97438 * 18 17 11 21 21 H 0.97002 * 119.99918 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.89351 * 359.97438 * 10 9 7 23 23 H 1.08998 * 110.67003 * 278.15980 * 13 12 11 24 24 H 1.09005 * 110.66247 * 41.29273 * 13 12 11 25 25 H 1.09004 * 110.72638 * 204.23659 * 14 13 12 26 26 H 1.08993 * 110.72791 * 80.94578 * 14 13 12 27 27 H 1.09004 * 110.31029 * 263.03787 * 15 14 13 28 28 H 1.09000 * 110.31101 * 140.87593 * 15 14 13 29 29 H 1.09000 * 109.91558 * 333.50852 * 16 12 11 30 30 H 1.09004 * 109.91389 * 94.79950 * 16 12 11 31 31 H 0.96998 * 120.00735 * 179.97438 * 19 18 17 32 32 H 0.97006 * 119.99928 * 359.97181 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3832 2.1073 1.3947 5 1 3.5872 1.4121 -0.5922 6 1 1.4950 2.6199 -0.8027 7 6 2.0073 -1.2129 -0.0057 8 1 3.0817 -1.2167 0.1041 9 6 1.3067 -2.4342 -0.1557 10 6 1.9756 -3.6632 -0.0226 11 6 1.2365 -4.8363 -0.1755 12 7 1.8490 -6.0731 -0.0493 13 6 2.3871 -6.2631 1.3221 14 6 2.5338 -7.8014 1.4353 15 6 1.2946 -8.3239 0.6728 16 6 0.8780 -7.1692 -0.2570 17 7 -0.0618 -4.7531 -0.4493 18 6 -0.6619 -3.5764 -0.5735 19 7 -2.0155 -3.5400 -0.8584 20 7 -0.0061 -2.4385 -0.4323 21 1 -0.4850 0.8401 0.0004 22 1 3.0327 -3.6984 0.1954 23 1 3.3564 -5.7756 1.4260 24 1 1.6847 -5.8878 2.0663 25 1 2.5056 -8.1159 2.4786 26 1 3.4524 -8.1377 0.9546 27 1 0.4907 -8.5560 1.3713 28 1 1.5546 -9.2059 0.0875 29 1 -0.1256 -6.8297 -0.0007 30 1 0.9074 -7.4995 -1.2954 31 1 -2.4688 -2.6875 -0.9519 32 1 -2.5112 -4.3670 -0.9648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260803397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = 58.455612 kcal Electronic energy + Delta-G solvation = -16305.111415 eV Core-core repulsion = 13686.652169 eV Total energy + Delta-G solvation = -2618.459246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51295 -37.71611 -34.21301 -33.38434 -31.74757 -30.03611 -28.55669 -28.10242 -26.00184 -22.52061 -21.59709 -20.45094 -20.12757 -17.84272 -16.80587 -15.80234 -15.37712 -14.95348 -14.54969 -14.05575 -13.81992 -13.44399 -13.15749 -12.86488 -12.58588 -12.03533 -11.75731 -11.35328 -11.11322 -11.04160 -10.82661 -10.68081 -10.32539 -10.19225 -9.85245 -9.64689 -9.05793 -8.54299 -7.90906 -7.33388 -6.75623 -6.43484 -4.68465 2.85853 2.94334 3.08232 3.12321 3.32263 3.92695 4.37637 4.69185 4.82611 4.97725 5.02887 5.25772 5.67965 5.75980 5.96615 5.98244 6.00346 6.03386 6.28668 6.31765 6.37260 6.61090 6.75358 6.92846 7.07044 7.18142 7.27645 7.41581 8.08258 8.10370 8.34679 8.52564 8.75959 8.93810 9.24775 10.22071 10.40440 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.035339 B = 0.007200 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.127839 B = 3887.859855 C = 4558.654711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.426 4.426 8 H 0.087 0.913 9 C 0.313 3.687 10 C -0.358 4.358 11 C 0.352 3.648 12 N -0.461 5.461 13 C 0.050 3.950 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.039 3.961 17 N -0.685 5.685 18 C 0.568 3.432 19 N -0.845 5.845 20 N -0.570 5.570 21 H 0.273 0.727 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -7.469 2.035 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.105 0.895 9 C 0.183 3.817 10 C -0.388 4.388 11 C 0.120 3.880 12 N -0.180 5.180 13 C -0.076 4.076 14 C -0.162 4.162 15 C -0.170 4.170 16 C -0.089 4.089 17 N -0.421 5.421 18 C 0.206 3.794 19 N -0.394 5.394 20 N -0.300 5.300 21 H 0.084 0.916 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.088 -7.354 1.476 7.502 hybrid contribution 0.265 0.749 0.517 0.948 sum 0.353 -6.605 1.993 6.908 Atomic orbital electron populations 1.70062 1.07380 1.27916 1.28108 1.26074 0.94850 1.01152 0.93176 0.86305 0.80721 0.80740 0.79015 1.19498 1.18342 1.20039 1.19585 0.94776 0.89199 1.42443 0.89474 1.18311 0.86835 0.91645 0.84951 1.21697 1.00199 0.92473 1.24444 1.19217 0.87631 0.89299 0.91877 1.61959 1.30595 1.00776 1.24697 1.23167 1.00416 0.95667 0.88374 1.22508 0.98641 0.95039 0.99994 1.22448 0.97643 0.98468 0.98472 1.22726 0.97154 0.89547 0.99457 1.67172 1.10641 1.28602 1.35699 1.19235 0.86641 0.85396 0.88119 1.41437 1.05634 1.10134 1.82229 1.68870 1.09502 1.24363 1.27235 0.91564 0.87621 0.89749 0.93387 0.91246 0.90866 0.91864 0.91501 0.90201 0.91211 0.76762 0.77940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.77 11.61 55.55 0.64 -18.12 16 2 C 0.07 1.87 5.48 -17.35 -0.10 1.78 16 3 Si 0.91 18.43 29.57 -169.99 -5.03 13.40 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.43 -11.47 9.18 -37.62 -0.35 -11.82 16 8 H 0.09 2.19 7.86 -52.49 -0.41 1.78 16 9 C 0.31 8.80 6.55 -84.70 -0.55 8.25 16 10 C -0.36 -9.26 9.35 -38.24 -0.36 -9.61 16 11 C 0.35 8.54 6.21 -154.82 -0.96 7.58 16 12 N -0.46 -9.32 5.30 -169.10 -0.90 -10.22 16 13 C 0.05 0.86 6.09 -1.90 -0.01 0.84 16 14 C -0.12 -1.62 7.06 -24.87 -0.18 -1.80 16 15 C -0.13 -1.78 6.93 -25.38 -0.18 -1.96 16 16 C 0.04 0.68 6.36 -2.76 -0.02 0.67 16 17 N -0.68 -16.90 8.29 -13.23 -0.11 -17.01 16 18 C 0.57 14.46 8.66 -323.14 -2.80 11.66 16 19 N -0.84 -17.20 9.07 29.72 0.27 -16.93 16 20 N -0.57 -15.99 8.15 -11.94 -0.10 -16.08 16 21 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 22 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.56 6.52 -51.93 -0.34 1.22 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 7.75 8.94 -40.82 -0.36 7.39 16 32 H 0.39 6.83 8.94 -40.82 -0.36 6.46 16 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -30.61 270.62 -10.62 -41.23 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -3.99 Total: 14.06 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -5.49 Total: 5.59 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -0.19 Total: -78.36 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.61 -10.62 -41.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.684 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds