Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47520 * 85.01980 * 3 2 1 5 5 H 1.48508 * 109.46773 * 205.01966 * 3 2 1 6 6 H 1.48495 * 109.47007 * 325.01578 * 3 2 1 7 7 C 1.40062 * 120.00130 * 180.27117 * 2 1 3 8 8 H 1.07997 * 120.00019 * 186.74821 * 7 2 1 9 9 C 1.41588 * 119.99734 * 6.75110 * 7 2 1 10 10 C 1.40552 * 120.57715 * 186.74238 * 9 7 2 11 11 C 1.39496 * 118.21914 * 179.78259 * 10 9 7 12 12 N 1.38594 * 120.42001 * 180.21472 * 11 10 9 13 13 C 1.48534 * 111.00006 * 62.87661 * 12 11 10 14 14 C 1.54937 * 103.22565 * 159.72512 * 13 12 11 15 15 C 1.54597 * 102.92079 * 322.59090 * 14 13 12 16 16 C 1.47899 * 111.00364 * 180.27964 * 12 11 10 17 17 N 1.32944 * 119.16568 * 0.48756 * 11 10 9 18 18 C 1.32666 * 121.10130 * 359.75069 * 17 11 10 19 19 N 1.38375 * 119.01997 * 180.02562 * 18 17 11 20 20 N 1.32093 * 121.96953 * 359.97438 * 18 17 11 21 21 H 0.97002 * 119.99918 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.89351 * 359.97438 * 10 9 7 23 23 H 1.08998 * 110.67003 * 278.15980 * 13 12 11 24 24 H 1.09005 * 110.66247 * 41.29273 * 13 12 11 25 25 H 1.09004 * 110.72638 * 204.23659 * 14 13 12 26 26 H 1.08993 * 110.72791 * 80.94578 * 14 13 12 27 27 H 1.09004 * 110.31029 * 263.03787 * 15 14 13 28 28 H 1.09000 * 110.31101 * 140.87593 * 15 14 13 29 29 H 1.09000 * 109.91558 * 333.50852 * 16 12 11 30 30 H 1.09004 * 109.91389 * 94.79950 * 16 12 11 31 31 H 0.96998 * 120.00735 * 179.97438 * 19 18 17 32 32 H 0.97006 * 119.99928 * 359.97181 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3832 2.1073 1.3947 5 1 3.5872 1.4121 -0.5922 6 1 1.4950 2.6199 -0.8027 7 6 2.0073 -1.2129 -0.0057 8 1 3.0817 -1.2167 0.1041 9 6 1.3067 -2.4342 -0.1557 10 6 1.9756 -3.6632 -0.0226 11 6 1.2365 -4.8363 -0.1755 12 7 1.8490 -6.0731 -0.0493 13 6 2.3871 -6.2631 1.3221 14 6 2.5338 -7.8014 1.4353 15 6 1.2946 -8.3239 0.6728 16 6 0.8780 -7.1692 -0.2570 17 7 -0.0618 -4.7531 -0.4493 18 6 -0.6619 -3.5764 -0.5735 19 7 -2.0155 -3.5400 -0.8584 20 7 -0.0061 -2.4385 -0.4323 21 1 -0.4850 0.8401 0.0004 22 1 3.0327 -3.6984 0.1954 23 1 3.3564 -5.7756 1.4260 24 1 1.6847 -5.8878 2.0663 25 1 2.5056 -8.1159 2.4786 26 1 3.4524 -8.1377 0.9546 27 1 0.4907 -8.5560 1.3713 28 1 1.5546 -9.2059 0.0875 29 1 -0.1256 -6.8297 -0.0007 30 1 0.9074 -7.4995 -1.2954 31 1 -2.4688 -2.6875 -0.9519 32 1 -2.5112 -4.3670 -0.9648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260803397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = 39.172077 kcal Electronic energy + Delta-G solvation = -16305.947612 eV Core-core repulsion = 13686.652169 eV Total energy + Delta-G solvation = -2619.295443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25949 -39.33571 -36.12284 -35.07540 -33.55344 -31.71749 -30.06864 -29.80824 -27.89753 -24.17064 -23.41460 -22.02773 -21.50500 -19.72728 -18.52347 -17.49627 -16.98810 -16.54083 -16.26131 -15.80957 -15.52817 -15.29166 -14.68320 -14.63257 -14.04258 -13.44588 -13.22150 -13.02054 -12.73035 -12.64866 -12.21588 -12.08400 -11.90273 -11.66040 -11.46299 -11.37828 -10.99213 -10.46356 -9.61742 -9.30151 -8.63287 -8.34969 -6.71168 1.02653 1.03413 1.42220 1.56195 1.60780 2.22674 2.67971 2.89697 3.10445 3.71112 3.79148 3.98631 4.16048 4.28743 4.39439 4.57582 4.76798 4.84518 4.97464 4.98363 5.00660 5.04695 5.15793 5.21081 5.34579 5.38859 5.46372 5.78226 6.10707 6.33904 6.45459 6.69781 6.95279 6.99780 7.30784 8.34344 8.45996 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.035339 B = 0.007200 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.127839 B = 3887.859855 C = 4558.654711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.029 3.971 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.267 1.267 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.281 3.719 10 C -0.387 4.387 11 C 0.355 3.645 12 N -0.469 5.469 13 C 0.045 3.955 14 C -0.110 4.110 15 C -0.122 4.122 16 C 0.035 3.965 17 N -0.685 5.685 18 C 0.550 3.450 19 N -0.825 5.825 20 N -0.600 5.600 21 H 0.283 0.717 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.030 0.970 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.409 0.591 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -8.247 2.458 8.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.179 1.179 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.151 3.849 10 C -0.417 4.417 11 C 0.122 3.878 12 N -0.188 5.188 13 C -0.081 4.081 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.092 4.092 17 N -0.422 5.422 18 C 0.188 3.812 19 N -0.376 5.376 20 N -0.332 5.332 21 H 0.093 0.907 22 H 0.127 0.873 23 H 0.104 0.896 24 H 0.049 0.951 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.239 0.761 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.678 -8.176 1.901 8.421 hybrid contribution 0.022 0.892 0.368 0.966 sum 0.699 -7.283 2.269 7.661 Atomic orbital electron populations 1.70134 1.09074 1.29555 1.28093 1.27037 0.95739 1.04623 0.92054 0.85060 0.79062 0.75288 0.79456 1.18427 1.17930 1.19114 1.19976 0.95333 0.90145 1.43489 0.88918 1.18791 0.87510 0.92982 0.85646 1.21748 1.00535 0.92787 1.26616 1.19596 0.87448 0.90677 0.90082 1.61931 1.30614 0.99751 1.26541 1.23297 0.99691 0.99075 0.86027 1.22520 0.99101 0.91276 1.01932 1.22432 0.98136 0.97397 0.98078 1.22814 0.95538 0.90213 1.00666 1.67370 1.10858 1.27971 1.36001 1.19732 0.88155 0.85394 0.87952 1.41323 1.03956 1.11348 1.80951 1.68848 1.09861 1.25610 1.28842 0.90673 0.87292 0.89559 0.95137 0.88446 0.89370 0.90612 0.88883 0.92402 0.91297 0.76063 0.76139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.89 11.61 21.84 0.25 -39.64 16 2 C 0.03 1.48 5.48 85.30 0.47 1.94 16 3 Si 0.99 37.72 29.57 68.60 2.03 39.75 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 6 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.46 -25.23 9.18 23.54 0.22 -25.02 16 8 H 0.09 4.80 7.86 -2.91 -0.02 4.78 16 9 C 0.28 16.36 6.55 40.18 0.26 16.62 16 10 C -0.39 -20.71 9.35 23.14 0.22 -20.50 16 11 C 0.36 17.58 6.21 133.13 0.83 18.41 16 12 N -0.47 -18.82 5.30 -688.92 -3.65 -22.47 16 13 C 0.04 1.49 6.09 86.65 0.53 2.01 16 14 C -0.11 -2.53 7.06 31.80 0.22 -2.30 16 15 C -0.12 -2.90 6.93 31.47 0.22 -2.68 16 16 C 0.03 1.19 6.36 86.44 0.55 1.74 16 17 N -0.69 -34.35 8.29 -195.77 -1.62 -35.97 16 18 C 0.55 28.57 8.66 261.60 2.27 30.83 16 19 N -0.82 -33.67 9.07 -59.90 -0.54 -34.22 16 20 N -0.60 -34.71 8.15 -191.69 -1.56 -36.27 16 21 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 22 H 0.11 5.53 8.06 -2.91 -0.02 5.50 16 23 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 24 H 0.03 1.11 8.00 -2.38 -0.02 1.09 16 25 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.24 6.52 -2.39 -0.02 2.22 16 30 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.41 15.77 8.94 -92.71 -0.83 14.94 16 32 H 0.41 13.98 8.94 -92.70 -0.83 13.15 16 Total: -1.00 -68.02 270.62 0.18 -67.84 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.50 Total: 39.91 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 5.77 Total: 21.07 kcal Atomic # 7 Polarization: -161.44 SS G_CDS: -7.12 Total: -168.57 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -68.02 0.18 -67.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.014 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds