Wall clock time and date at job start Mon Mar 30 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46866 * 299.99587 * 3 2 1 6 6 H 1.48498 * 109.47357 * 59.99496 * 3 2 1 7 7 C 1.37870 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00760 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.38129 * 120.75001 * 264.97278 * 10 9 7 12 12 N 1.32495 * 119.28526 * 179.77438 * 11 10 9 13 13 C 1.32494 * 120.92997 * 0.50508 * 12 11 10 14 14 N 1.38396 * 119.17481 * 179.76036 * 13 12 11 15 15 C 1.46504 * 119.99981 * 359.73054 * 14 13 12 16 16 C 1.53000 * 117.49545 * 136.38000 * 15 14 13 17 17 C 1.52997 * 60.00347 * 107.48990 * 16 15 14 18 18 N 1.32435 * 121.64524 * 359.48591 * 13 12 11 19 19 C 1.32922 * 120.61760 * 0.25528 * 18 13 12 20 20 N 1.38527 * 120.48930 * 180.02562 * 19 18 13 21 21 H 0.97007 * 120.00075 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47244 * 59.99248 * 9 7 2 23 23 H 1.09002 * 109.46685 * 299.99751 * 9 7 2 24 24 H 1.07999 * 120.36098 * 0.05129 * 11 10 9 25 25 H 0.97002 * 119.99840 * 179.73233 * 14 13 12 26 26 H 1.08990 * 115.56282 * 350.69224 * 15 14 13 27 27 H 1.09002 * 117.49696 * 214.98203 * 16 15 14 28 28 H 1.09002 * 117.50343 * 0.02562 * 16 15 14 29 29 H 1.08999 * 117.49685 * 252.51237 * 17 16 15 30 30 H 1.08997 * 117.50044 * 107.48590 * 17 16 15 31 31 H 0.97000 * 120.00150 * 359.97438 * 20 19 18 32 32 H 0.97004 * 120.00197 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6102 -4.2489 -1.1820 12 7 3.4767 -5.2508 -1.1487 13 6 3.9729 -5.6840 0.0009 14 7 4.8718 -6.7363 -0.0061 15 6 5.2589 -7.3606 -1.2737 16 6 6.7414 -7.6764 -1.4818 17 6 5.7462 -8.8102 -1.2274 18 7 3.6343 -5.1317 1.1560 19 6 2.7739 -4.1194 1.1960 20 7 2.4220 -3.5433 2.4057 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6241 -2.5566 0.8903 24 1 2.2088 -3.9057 -2.1240 25 1 5.2454 -7.0605 0.8283 26 1 4.6831 -7.0507 -2.1457 27 1 7.1409 -7.5742 -2.4908 28 1 7.4287 -7.4201 -0.6755 29 1 5.7787 -9.2994 -0.2539 30 1 5.4908 -9.4540 -2.0691 31 1 2.8039 -3.8787 3.2319 32 1 1.7937 -2.8046 2.4266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:17 Heat of formation + Delta-G solvation = 56.925873 kcal Electronic energy + Delta-G solvation = -15725.100965 eV Core-core repulsion = 13106.575384 eV Total energy + Delta-G solvation = -2618.525580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69121 -38.78430 -36.63383 -35.45981 -34.45162 -32.62232 -31.82457 -28.36797 -25.34561 -24.72294 -23.18596 -23.03771 -21.91395 -19.48436 -18.89671 -18.44345 -16.85633 -16.81584 -16.57546 -15.97631 -15.83494 -15.11375 -14.94511 -14.33991 -14.27292 -13.58086 -13.34456 -13.27406 -12.87142 -12.59609 -12.36988 -12.29698 -12.22249 -11.56995 -11.34392 -11.18352 -10.77652 -10.58106 -9.88858 -9.49373 -8.53946 -8.08424 -6.25932 0.51929 0.69337 1.40413 1.43734 1.54601 1.86768 2.43407 2.80680 2.98522 3.16417 3.30200 3.58578 3.93122 4.05682 4.17468 4.21157 4.34184 4.60452 4.81877 4.85108 4.99178 5.09828 5.27843 5.37783 5.56389 5.68098 5.78210 5.90297 6.24090 6.37100 6.42439 6.51010 6.85070 7.04985 7.42787 7.65969 8.93589 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.041023 B = 0.005431 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.372925 B = 5154.108887 C = 5336.881632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.043 0.957 9 C 0.088 3.912 10 C -0.278 4.278 11 C 0.190 3.810 12 N -0.612 5.612 13 C 0.570 3.430 14 N -0.669 5.669 15 C 0.078 3.922 16 C -0.191 4.191 17 C -0.174 4.174 18 N -0.639 5.639 19 C 0.466 3.534 20 N -0.819 5.819 21 H 0.264 0.736 22 H 0.008 0.992 23 H 0.012 0.988 24 H 0.169 0.831 25 H 0.415 0.585 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.409 0.591 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -13.145 0.512 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.050 3.950 10 C -0.290 4.290 11 C 0.029 3.971 12 N -0.339 5.339 13 C 0.211 3.789 14 N -0.306 5.306 15 C -0.028 4.028 16 C -0.230 4.230 17 C -0.212 4.212 18 N -0.373 5.373 19 C 0.218 3.782 20 N -0.363 5.363 21 H 0.073 0.927 22 H 0.026 0.974 23 H 0.030 0.970 24 H 0.186 0.814 25 H 0.252 0.748 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.239 0.761 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.761 -13.803 0.310 16.908 hybrid contribution -0.384 1.845 0.709 2.013 sum 9.378 -11.958 1.018 15.230 Atomic orbital electron populations 1.70051 1.07221 1.27645 1.51425 1.25704 0.95544 1.02233 0.94892 0.85571 0.78723 0.79891 0.77845 1.19886 1.20564 1.20193 1.21331 0.92491 0.91327 1.50488 0.93872 1.17622 0.91760 0.89243 0.96421 1.21166 1.09132 1.05032 0.93668 1.22625 0.88844 0.87706 0.97912 1.67871 1.18674 1.19436 1.27946 1.19068 0.88008 0.87638 0.84178 1.43244 1.45465 1.32700 1.09151 1.21599 0.97247 0.96403 0.87576 1.23510 0.92537 1.02950 1.03995 1.23477 1.02435 0.90839 1.04488 1.67169 1.23695 1.16878 1.29601 1.18086 0.86359 0.86322 0.87462 1.42165 1.50746 1.38870 1.04568 0.92653 0.97362 0.96955 0.81395 0.74763 0.85597 0.87110 0.88549 0.87848 0.86519 0.76098 0.74768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.59 13.29 21.44 0.28 -52.30 16 2 C 0.02 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.52 -28.00 9.09 25.60 0.23 -27.77 16 8 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 9 C 0.09 4.40 4.61 29.10 0.13 4.53 16 10 C -0.28 -12.30 5.12 -19.55 -0.10 -12.40 16 11 C 0.19 7.81 10.96 84.57 0.93 8.74 16 12 N -0.61 -23.80 9.08 -198.26 -1.80 -25.60 16 13 C 0.57 21.12 8.42 261.52 2.20 23.32 16 14 N -0.67 -18.94 5.71 -330.48 -1.89 -20.83 16 15 C 0.08 1.84 6.45 44.99 0.29 2.13 16 16 C -0.19 -3.35 10.46 30.59 0.32 -3.03 16 17 C -0.17 -2.78 10.46 30.60 0.32 -2.46 16 18 N -0.64 -24.64 10.49 -195.59 -2.05 -26.70 16 19 C 0.47 18.99 7.80 133.19 1.04 20.02 16 20 N -0.82 -28.43 8.98 -55.12 -0.50 -28.93 16 21 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 22 H 0.01 0.43 8.07 -2.38 -0.02 0.41 16 23 H 0.01 0.63 6.93 -2.39 -0.02 0.61 16 24 H 0.17 6.36 8.06 -2.91 -0.02 6.33 16 25 H 0.41 10.14 8.94 -92.71 -0.83 9.31 16 26 H 0.13 3.37 7.29 -2.39 -0.02 3.35 16 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.41 11.58 8.95 -92.71 -0.83 10.75 16 32 H 0.42 15.27 7.06 -92.71 -0.65 14.61 16 Total: -1.00 -62.87 281.15 0.76 -62.11 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -1.14 Total: 32.78 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.83 Total: 14.37 kcal Atomic # 7 Polarization: -148.41 SS G_CDS: -5.95 Total: -154.36 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.87 0.76 -62.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.031 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds