Wall clock time and date at job start Mon Mar 30 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33764 * 125.97303 * 2 1 4 4 C 1.41688 * 107.51168 * 179.91282 * 3 2 1 5 5 C 1.33697 * 107.60582 * 0.14307 * 4 3 2 6 6 N 1.36729 * 125.97959 * 179.97438 * 2 1 3 7 7 C 1.46501 * 125.58744 * 359.96135 * 6 2 1 8 8 C 1.50856 * 122.56028 * 179.21818 * 4 3 2 9 9 C 1.53587 * 107.61956 * 344.72598 * 8 4 3 10 10 N 1.46833 * 109.96642 * 49.67401 * 9 8 4 11 11 C 1.47370 * 111.81175 * 286.70586 * 10 9 8 12 12 H 1.09005 * 109.80433 * 292.42639 * 11 10 9 13 13 C 1.53001 * 109.76727 * 171.67543 * 11 10 9 14 14 C 1.50706 * 109.46841 * 66.49943 * 13 11 10 15 15 H 1.07994 * 119.99938 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99347 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00495 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46993 * 120.00043 * 18 16 14 21 21 H 1.48494 * 109.47422 * 240.00637 * 18 16 14 22 22 H 1.09001 * 109.47318 * 270.01593 * 1 2 3 23 23 H 1.09003 * 109.47146 * 30.02213 * 1 2 3 24 24 H 1.09002 * 109.47168 * 150.01500 * 1 2 3 25 25 H 1.08002 * 125.99378 * 180.09242 * 5 4 3 26 26 H 1.09007 * 109.46855 * 269.99429 * 7 6 2 27 27 H 1.09000 * 109.47599 * 29.99585 * 7 6 2 28 28 H 1.08998 * 109.47342 * 150.00175 * 7 6 2 29 29 H 1.08998 * 109.98212 * 225.09638 * 8 4 3 30 30 H 1.09001 * 109.69835 * 104.19292 * 8 4 3 31 31 H 1.08996 * 109.38696 * 289.52390 * 9 8 4 32 32 H 1.09000 * 109.38841 * 169.82374 * 9 8 4 33 33 H 1.00901 * 111.00339 * 51.24600 * 10 9 8 34 34 H 1.09003 * 109.46758 * 186.49453 * 13 11 10 35 35 H 1.08999 * 109.47044 * 306.50003 * 13 11 10 36 36 H 0.96999 * 120.00017 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0825 0.0000 4 6 3.6367 0.6339 0.0021 5 6 3.6167 -0.7030 0.0000 6 7 2.3102 -1.1064 0.0005 7 6 1.8470 -2.4963 0.0019 8 6 4.8094 1.5827 -0.0147 9 6 4.2813 2.9674 -0.4179 10 7 3.1118 3.3153 0.3989 11 6 1.9197 2.5435 0.0051 12 1 1.5972 2.8449 -0.9916 13 6 0.7912 2.7859 1.0095 14 6 0.3402 4.2212 0.9214 15 1 0.8115 4.8932 0.2196 16 6 -0.6742 4.6761 1.7368 17 7 -1.2479 3.8577 2.5917 18 14 -1.2330 6.4553 1.6283 19 1 -0.4337 7.1630 0.5960 20 1 -2.6703 6.5010 1.2581 21 1 -1.0393 7.1162 2.9439 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5136 25 1 4.4809 -1.3507 0.0022 26 1 1.7328 -2.8401 1.0300 27 1 0.8875 -2.5601 -0.5113 28 1 2.5761 -3.1228 -0.5117 29 1 5.5515 1.2448 -0.7379 30 1 5.2563 1.6319 0.9782 31 1 3.9968 2.9539 -1.4700 32 1 5.0633 3.7113 -0.2655 33 1 3.3093 3.1990 1.3815 34 1 -0.0465 2.1271 0.7806 35 1 1.1513 2.5793 2.0173 36 1 -1.9618 4.1778 3.1651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260832545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:45 Heat of formation + Delta-G solvation = 43.631751 kcal Electronic energy + Delta-G solvation = -16853.460044 eV Core-core repulsion = 14337.898331 eV Total energy + Delta-G solvation = -2515.561713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.10982 -36.81336 -33.53996 -31.92636 -31.89852 -29.75549 -27.80428 -26.20702 -25.12643 -23.35816 -21.85485 -20.59959 -18.66422 -18.20354 -16.22952 -15.81235 -15.14008 -14.62860 -14.24680 -14.19403 -13.81936 -13.14925 -12.94763 -12.67095 -12.33181 -12.18660 -12.09462 -11.82098 -11.61264 -11.28551 -11.12555 -10.85287 -10.69575 -10.49865 -10.31441 -9.98287 -9.19441 -8.90418 -8.19678 -7.78114 -7.47600 -7.36411 -5.83177 -3.80743 2.66390 3.28519 3.42484 3.44571 3.49997 3.56754 4.62159 4.86018 5.14607 5.20412 5.25869 5.40925 5.42720 5.51984 5.54223 5.64652 5.79161 5.81715 6.10920 6.15951 6.20074 6.31335 6.48088 6.49972 6.64639 6.67158 6.86049 7.14862 7.54654 7.67864 7.72684 7.83397 7.87336 8.16092 8.18185 8.38066 8.65627 9.26531 9.80947 11.28484 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.007842 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.162501 B = 3569.529481 C = 4373.825370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.033 3.967 3 C -0.183 4.183 4 C -0.170 4.170 5 C -0.020 4.020 6 N -0.465 5.465 7 C 0.080 3.920 8 C -0.080 4.080 9 C 0.062 3.938 10 N -0.665 5.665 11 C 0.165 3.835 12 H 0.070 0.930 13 C 0.026 3.974 14 C -0.493 4.493 15 H 0.062 0.938 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.287 1.287 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.152 0.848 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.033 0.967 35 H 0.013 0.987 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -11.185 -5.483 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.190 4.190 4 C -0.178 4.178 5 C -0.147 4.147 6 N -0.144 5.144 7 C -0.063 4.063 8 C -0.120 4.120 9 C -0.068 4.068 10 N -0.293 5.293 11 C 0.055 3.945 12 H 0.088 0.912 13 C -0.011 4.011 14 C -0.532 4.532 15 H 0.080 0.920 16 C -0.149 4.149 17 N -0.544 5.544 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.214 1.214 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.169 0.831 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.591 -10.970 -5.749 14.527 hybrid contribution -0.010 -0.228 0.496 0.546 sum 7.581 -11.198 -5.253 14.508 Atomic orbital electron populations 1.20423 0.88113 1.02271 1.02967 1.19817 0.93280 0.85064 1.09437 1.20515 0.92342 0.97197 1.08976 1.19362 0.95168 0.92750 1.10529 1.20922 0.85756 0.94974 1.13059 1.43955 1.05625 1.05286 1.59553 1.21834 1.01168 0.80738 1.02530 1.20763 0.94658 0.95892 1.00709 1.22000 0.93411 0.93004 0.98423 1.60615 1.02976 1.57725 1.07967 1.20332 0.91220 0.82668 1.00295 0.91182 1.19345 0.91642 0.97146 0.92965 1.21309 1.16353 0.95826 1.19707 0.92004 1.24999 0.96897 0.97188 0.95769 1.69981 1.25792 1.34780 1.23879 0.86584 0.78129 0.85857 0.77704 1.19730 1.21470 1.21383 0.90747 0.89207 0.93352 0.83079 0.91661 0.90278 0.90681 0.92035 0.92005 0.91840 0.91624 0.84361 0.94863 0.96898 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 8.38 36.00 0.30 -1.07 16 2 C 0.03 0.61 6.79 -81.98 -0.56 0.06 16 3 C -0.18 -3.66 5.50 -104.84 -0.58 -4.23 16 4 C -0.17 -3.02 5.99 -104.82 -0.63 -3.65 16 5 C -0.02 -0.31 11.42 -16.96 -0.19 -0.50 16 6 N -0.46 -7.23 3.17 -120.29 -0.38 -7.61 16 7 C 0.08 0.85 10.93 59.85 0.65 1.50 16 8 C -0.08 -1.23 6.43 -27.50 -0.18 -1.41 16 9 C 0.06 1.04 6.50 -3.56 -0.02 1.02 16 10 N -0.67 -13.70 6.32 -107.29 -0.68 -14.38 16 11 C 0.16 3.65 2.65 -68.57 -0.18 3.47 16 12 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 13 C 0.03 0.68 4.32 -27.88 -0.12 0.55 16 14 C -0.49 -14.04 8.89 -34.44 -0.31 -14.35 16 15 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 16 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 17 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 18 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H 0.07 1.34 8.00 -51.93 -0.42 0.93 16 23 H 0.09 1.66 6.86 -51.93 -0.36 1.30 16 24 H 0.05 0.66 7.07 -51.93 -0.37 0.29 16 25 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.08 0.76 7.04 -51.93 -0.37 0.39 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.34 7.10 8.53 -39.29 -0.34 6.76 16 34 H 0.03 0.87 4.83 -51.93 -0.25 0.62 16 35 H 0.01 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -31.93 288.31 -8.33 -40.26 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.43 Total: 3.90 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -1.90 Total: -17.25 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.32 Total: -48.48 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.93 -8.33 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260832545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.893 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds