Wall clock time and date at job start Mon Mar 30 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33764 * 125.97303 * 2 1 4 4 C 1.41688 * 107.51168 * 179.91282 * 3 2 1 5 5 C 1.33697 * 107.60582 * 0.14307 * 4 3 2 6 6 N 1.36729 * 125.97959 * 179.97438 * 2 1 3 7 7 C 1.46501 * 125.58744 * 359.96135 * 6 2 1 8 8 C 1.50856 * 122.56028 * 179.21818 * 4 3 2 9 9 C 1.53587 * 107.61956 * 344.72598 * 8 4 3 10 10 N 1.46833 * 109.96642 * 49.67401 * 9 8 4 11 11 C 1.47370 * 111.81175 * 286.70586 * 10 9 8 12 12 H 1.09005 * 109.80433 * 292.42639 * 11 10 9 13 13 C 1.53001 * 109.76727 * 171.67543 * 11 10 9 14 14 C 1.50706 * 109.46841 * 66.49943 * 13 11 10 15 15 H 1.07994 * 119.99938 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99347 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00495 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46993 * 120.00043 * 18 16 14 21 21 H 1.48494 * 109.47422 * 240.00637 * 18 16 14 22 22 H 1.09001 * 109.47318 * 270.01593 * 1 2 3 23 23 H 1.09003 * 109.47146 * 30.02213 * 1 2 3 24 24 H 1.09002 * 109.47168 * 150.01500 * 1 2 3 25 25 H 1.08002 * 125.99378 * 180.09242 * 5 4 3 26 26 H 1.09007 * 109.46855 * 269.99429 * 7 6 2 27 27 H 1.09000 * 109.47599 * 29.99585 * 7 6 2 28 28 H 1.08998 * 109.47342 * 150.00175 * 7 6 2 29 29 H 1.08998 * 109.98212 * 225.09638 * 8 4 3 30 30 H 1.09001 * 109.69835 * 104.19292 * 8 4 3 31 31 H 1.08996 * 109.38696 * 289.52390 * 9 8 4 32 32 H 1.09000 * 109.38841 * 169.82374 * 9 8 4 33 33 H 1.00901 * 111.00339 * 51.24600 * 10 9 8 34 34 H 1.09003 * 109.46758 * 186.49453 * 13 11 10 35 35 H 1.08999 * 109.47044 * 306.50003 * 13 11 10 36 36 H 0.96999 * 120.00017 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0825 0.0000 4 6 3.6367 0.6339 0.0021 5 6 3.6167 -0.7030 0.0000 6 7 2.3102 -1.1064 0.0005 7 6 1.8470 -2.4963 0.0019 8 6 4.8094 1.5827 -0.0147 9 6 4.2813 2.9674 -0.4179 10 7 3.1118 3.3153 0.3989 11 6 1.9197 2.5435 0.0051 12 1 1.5972 2.8449 -0.9916 13 6 0.7912 2.7859 1.0095 14 6 0.3402 4.2212 0.9214 15 1 0.8115 4.8932 0.2196 16 6 -0.6742 4.6761 1.7368 17 7 -1.2479 3.8577 2.5917 18 14 -1.2330 6.4553 1.6283 19 1 -0.4337 7.1630 0.5960 20 1 -2.6703 6.5010 1.2581 21 1 -1.0393 7.1162 2.9439 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5136 25 1 4.4809 -1.3507 0.0022 26 1 1.7328 -2.8401 1.0300 27 1 0.8875 -2.5601 -0.5113 28 1 2.5761 -3.1228 -0.5117 29 1 5.5515 1.2448 -0.7379 30 1 5.2563 1.6319 0.9782 31 1 3.9968 2.9539 -1.4700 32 1 5.0633 3.7113 -0.2655 33 1 3.3093 3.1990 1.3815 34 1 -0.0465 2.1271 0.7806 35 1 1.1513 2.5793 2.0173 36 1 -1.9618 4.1778 3.1651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260832545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:45 Heat of formation + Delta-G solvation = 23.103272 kcal Electronic energy + Delta-G solvation = -16854.350226 eV Core-core repulsion = 14337.898331 eV Total energy + Delta-G solvation = -2516.451895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.40426 -38.29373 -35.39278 -33.73683 -33.10127 -31.27493 -29.45019 -27.63494 -26.50035 -25.15328 -23.17086 -22.36924 -19.97937 -19.64086 -18.23235 -17.18231 -16.58666 -16.24092 -15.84972 -15.73517 -15.16766 -14.43206 -14.33877 -14.22218 -13.88366 -13.60306 -13.41114 -13.18054 -13.08825 -12.95798 -12.60848 -12.48149 -12.43645 -12.27164 -11.98460 -11.75724 -11.07567 -11.04607 -10.44211 -9.14317 -8.94793 -8.75064 -8.07153 -6.12637 1.39116 1.43144 1.44150 1.58016 2.04358 2.17453 2.50290 3.24914 3.63200 3.95489 4.07500 4.17473 4.30647 4.38875 4.41353 4.49410 4.53849 4.67591 4.74209 4.74883 4.84597 4.89324 5.04935 5.08209 5.13000 5.20274 5.46173 5.57405 5.62875 5.78441 5.95053 6.17222 6.33019 6.42548 6.56307 6.66734 6.74534 7.01301 7.53117 9.04297 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.007842 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.162501 B = 3569.529481 C = 4373.825370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.017 3.983 3 C -0.220 4.220 4 C -0.198 4.198 5 C -0.005 4.005 6 N -0.461 5.461 7 C 0.070 3.930 8 C -0.071 4.071 9 C 0.062 3.938 10 N -0.681 5.681 11 C 0.177 3.823 12 H 0.049 0.951 13 C 0.040 3.960 14 C -0.508 4.508 15 H 0.054 0.946 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.282 1.282 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.192 0.808 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.333 0.667 34 H 0.022 0.978 35 H -0.022 1.022 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -12.384 -6.181 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.228 4.228 4 C -0.205 4.205 5 C -0.133 4.133 6 N -0.139 5.139 7 C -0.070 4.070 8 C -0.110 4.110 9 C -0.067 4.067 10 N -0.309 5.309 11 C 0.067 3.933 12 H 0.067 0.933 13 C 0.003 3.997 14 C -0.547 4.547 15 H 0.072 0.928 16 C -0.198 4.198 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.208 1.208 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.209 0.791 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.040 0.960 35 H -0.004 1.004 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.937 -12.195 -6.463 16.442 hybrid contribution -0.418 0.072 0.705 0.822 sum 8.519 -12.123 -5.758 15.896 Atomic orbital electron populations 1.20277 0.88004 1.02818 1.01927 1.19920 0.93736 0.86128 1.09666 1.20434 0.94513 0.96158 1.11682 1.19699 0.94632 0.94238 1.11927 1.21523 0.86736 0.94755 1.10325 1.44239 1.05360 1.06396 1.57917 1.22203 1.02667 0.78269 1.03864 1.20701 0.94405 0.94138 1.01776 1.22079 0.92388 0.94988 0.97288 1.60556 1.04066 1.58245 1.08041 1.19840 0.90753 0.85125 0.97583 0.93280 1.19129 0.92742 0.95768 0.92103 1.21580 1.16552 0.96968 1.19577 0.92761 1.25828 0.96963 1.01643 0.95350 1.70102 1.26293 1.36797 1.24581 0.85507 0.77874 0.80450 0.77829 1.19185 1.20557 1.20830 0.92524 0.91650 0.89767 0.79075 0.90667 0.89287 0.87552 0.89203 0.91415 0.92489 0.89487 0.85037 0.95973 1.00381 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.54 8.38 71.23 0.60 -1.94 16 2 C 0.02 0.61 6.79 40.78 0.28 0.88 16 3 C -0.22 -8.94 5.50 -20.00 -0.11 -9.05 16 4 C -0.20 -6.72 5.99 -19.99 -0.12 -6.84 16 5 C 0.00 -0.14 11.42 82.90 0.95 0.81 16 6 N -0.46 -13.25 3.17 -534.49 -1.69 -14.95 16 7 C 0.07 1.25 10.93 127.77 1.40 2.64 16 8 C -0.07 -2.02 6.43 30.09 0.19 -1.83 16 9 C 0.06 2.03 6.50 86.51 0.56 2.60 16 10 N -0.68 -28.82 6.32 -493.36 -3.12 -31.94 16 11 C 0.18 8.22 2.65 44.10 0.12 8.33 16 12 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 13 C 0.04 2.17 4.32 29.85 0.13 2.30 16 14 C -0.51 -30.04 8.89 25.60 0.23 -29.82 16 15 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 17 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 18 Si 0.96 46.40 29.54 68.60 2.03 48.42 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 23 H 0.06 2.56 6.86 -2.39 -0.02 2.54 16 24 H 0.08 2.23 7.07 -2.39 -0.02 2.21 16 25 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.09 1.41 7.04 -2.39 -0.02 1.40 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 33 H 0.33 14.44 8.53 -89.69 -0.77 13.68 16 34 H 0.02 1.24 4.83 -2.39 -0.01 1.23 16 35 H -0.02 -1.35 8.08 -2.39 -0.02 -1.37 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.08 288.31 2.48 -68.60 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.30 Total: 19.07 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 4.68 Total: -31.55 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.52 Total: -104.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.08 2.48 -68.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260832545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -71.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds