Wall clock time and date at job start Mon Mar 30 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35173 * 125.84932 * 2 1 4 4 C 1.39973 * 107.21801 * 179.97438 * 3 2 1 5 5 C 1.35567 * 107.65949 * 0.13789 * 4 3 2 6 6 N 1.35542 * 108.15476 * 359.79875 * 5 4 3 7 7 C 1.46493 * 125.65419 * 180.16794 * 6 5 4 8 8 C 1.50871 * 123.21747 * 179.79892 * 5 4 3 9 9 H 1.09002 * 109.70186 * 103.15863 * 8 5 4 10 10 C 1.53004 * 109.70139 * 223.72320 * 8 5 4 11 11 C 1.50698 * 109.46876 * 184.43506 * 10 8 5 12 12 H 1.07997 * 120.00348 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99734 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00020 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99969 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47181 * 89.99540 * 15 13 11 17 17 H 1.48497 * 109.47218 * 209.99970 * 15 13 11 18 18 H 1.48503 * 109.47420 * 330.00001 * 15 13 11 19 19 N 1.47272 * 108.31774 * 343.43986 * 8 5 4 20 20 C 1.46951 * 111.49427 * 51.45345 * 19 8 5 21 21 C 1.50790 * 128.91162 * 180.14036 * 4 3 2 22 22 H 1.08990 * 109.46924 * 90.02292 * 1 2 3 23 23 H 1.09000 * 109.46983 * 210.02821 * 1 2 3 24 24 H 1.09005 * 109.46494 * 330.02302 * 1 2 3 25 25 H 1.07997 * 126.38980 * 359.95436 * 3 2 1 26 26 H 1.09007 * 109.47164 * 269.99840 * 7 6 5 27 27 H 1.08996 * 109.47121 * 29.99790 * 7 6 5 28 28 H 1.09004 * 109.47089 * 150.00254 * 7 6 5 29 29 H 1.09000 * 109.47010 * 304.42934 * 10 8 5 30 30 H 1.08993 * 109.47077 * 64.43522 * 10 8 5 31 31 H 0.96997 * 119.99894 * 180.02562 * 14 13 11 32 32 H 1.00897 * 111.00235 * 175.77321 * 19 8 5 33 33 H 1.09004 * 109.45026 * 48.63962 * 20 19 8 34 34 H 1.09003 * 109.44897 * 168.57880 * 20 19 8 35 35 H 1.08996 * 109.78816 * 44.69800 * 21 4 3 36 36 H 1.08998 * 109.78537 * 283.86310 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2987 1.0957 0.0000 4 6 3.6251 0.6485 0.0006 5 6 3.6021 -0.7070 -0.0022 6 7 2.3072 -1.1074 0.0001 7 6 1.8431 -2.4969 0.0018 8 6 4.8501 -1.5548 -0.0069 9 1 5.0251 -1.9566 0.9911 10 6 4.6894 -2.7037 -1.0045 11 6 5.8921 -3.6084 -0.9266 12 1 6.6912 -3.3860 -0.2351 13 6 5.9726 -4.7196 -1.7390 14 7 4.9996 -4.9901 -2.5814 15 14 7.4636 -5.8407 -1.6430 16 1 7.2201 -6.9029 -0.6342 17 1 7.7010 -6.4633 -2.9700 18 1 8.6551 -5.0471 -1.2483 19 7 5.9850 -0.7055 -0.4063 20 6 6.0487 0.5220 0.3991 21 6 4.8974 1.4577 0.0037 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8897 0.5143 24 1 -0.3632 0.8903 0.5135 25 1 1.9693 2.1242 -0.0007 26 1 1.7263 -2.8423 -1.0255 27 1 2.5728 -3.1231 0.5149 28 1 0.8845 -2.5592 0.5171 29 1 3.7911 -3.2718 -0.7628 30 1 4.6034 -2.2996 -2.0131 31 1 5.0561 -5.7720 -3.1527 32 1 6.8538 -1.2161 -0.3566 33 1 5.9633 0.2677 1.4556 34 1 7.0003 1.0232 0.2223 35 1 4.8167 2.2694 0.7267 36 1 5.0780 1.8651 -0.9910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260847118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:31 Heat of formation + Delta-G solvation = 40.649888 kcal Electronic energy + Delta-G solvation = -16875.458690 eV Core-core repulsion = 14359.767673 eV Total energy + Delta-G solvation = -2515.691017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04803 -36.61620 -33.86546 -32.35190 -31.03287 -30.34772 -28.10360 -26.17749 -25.46246 -23.11051 -21.80665 -20.37449 -19.33137 -17.51406 -16.55062 -15.80381 -15.03523 -14.60483 -14.36467 -14.27775 -13.96124 -13.23236 -12.84307 -12.63655 -12.37054 -12.24633 -12.05836 -11.85442 -11.67886 -11.45725 -11.19787 -10.95271 -10.84702 -10.48001 -10.33015 -10.19249 -9.40644 -9.10391 -8.38606 -7.94292 -7.65322 -7.05027 -6.03764 -4.05720 2.77768 3.29068 3.36304 3.38824 3.46157 3.51234 4.42666 4.91673 5.21705 5.26674 5.34377 5.37030 5.54454 5.58894 5.67468 5.76624 5.81227 5.91678 5.98931 6.02430 6.10649 6.24002 6.27013 6.32822 6.56730 6.63915 6.88444 6.99538 7.42387 7.61576 7.67616 7.81808 7.93253 7.96401 7.99584 8.25486 8.37763 8.98045 9.57377 11.07274 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.007925 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.131857 B = 3532.275924 C = 4350.805921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.190 4.190 4 C -0.179 4.179 5 C 0.043 3.957 6 N -0.426 5.426 7 C 0.071 3.929 8 C 0.164 3.836 9 H 0.034 0.966 10 C 0.026 3.974 11 C -0.516 4.516 12 H 0.053 0.947 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.672 5.672 20 C 0.057 3.943 21 C -0.036 4.036 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.354 0.646 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 8.621 6.250 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C -0.214 4.214 4 C -0.185 4.185 5 C -0.071 4.071 6 N -0.101 5.101 7 C -0.071 4.071 8 C 0.054 3.946 9 H 0.052 0.948 10 C -0.011 4.011 11 C -0.555 4.555 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.198 1.198 19 N -0.306 5.306 20 C -0.073 4.073 21 C -0.074 4.074 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.174 0.826 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.017 8.413 5.606 11.765 hybrid contribution 1.064 -1.118 0.721 1.703 sum -4.953 7.296 6.327 10.853 Atomic orbital electron populations 1.20174 0.88916 1.02201 1.01892 1.20249 0.92869 0.85864 1.13450 1.20159 0.92264 0.96733 1.12292 1.19156 0.94198 0.92594 1.12572 1.20463 0.85017 0.94227 1.07402 1.43391 1.05221 1.05737 1.55727 1.22165 1.00601 0.80453 1.03861 1.20183 0.84749 0.91628 0.98067 0.94787 1.19335 0.97362 0.90120 0.94315 1.21104 1.04634 1.08546 1.21176 0.92926 1.24965 0.96181 0.97774 0.95240 1.69950 1.32229 1.27461 1.23593 0.86608 0.83315 0.80861 0.77281 1.20849 1.21245 1.19846 1.60103 1.06805 1.07038 1.56642 1.21958 0.98099 0.92584 0.94645 1.19999 0.90936 0.95735 1.00701 0.91740 0.92411 0.90947 0.85588 0.90368 0.88945 0.91070 0.95547 0.95343 0.92997 0.82561 0.95943 0.91487 0.92173 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.11 36.01 0.36 -0.55 16 2 C -0.01 -0.23 6.90 -81.55 -0.56 -0.79 16 3 C -0.19 -3.32 10.75 -40.02 -0.43 -3.75 16 4 C -0.18 -3.46 6.02 -104.88 -0.63 -4.09 16 5 C 0.04 0.90 6.26 -81.82 -0.51 0.39 16 6 N -0.43 -8.03 3.14 -115.09 -0.36 -8.39 16 7 C 0.07 1.17 9.15 59.84 0.55 1.72 16 8 C 0.16 3.59 2.59 -68.58 -0.18 3.42 16 9 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.03 0.66 4.43 -27.88 -0.12 0.54 16 11 C -0.52 -14.02 8.57 -34.44 -0.30 -14.32 16 12 H 0.05 1.38 7.19 -52.49 -0.38 1.00 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 N -0.67 -13.70 6.39 -107.25 -0.69 -14.38 16 20 C 0.06 0.96 6.52 -3.52 -0.02 0.94 16 21 C -0.04 -0.59 6.51 -27.56 -0.18 -0.77 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.64 7.06 -51.93 -0.37 0.28 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.08 1.36 7.96 -51.93 -0.41 0.95 16 27 H 0.09 1.63 6.67 -51.93 -0.35 1.28 16 28 H 0.07 0.93 7.03 -51.93 -0.37 0.56 16 29 H 0.03 0.68 4.69 -51.93 -0.24 0.43 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.35 7.12 7.81 -39.29 -0.31 6.81 16 33 H 0.02 0.37 8.07 -51.93 -0.42 -0.04 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -30.82 286.79 -8.48 -39.31 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.36 Total: 4.09 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.12 Total: -15.73 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.31 Total: -48.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.82 -8.48 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.955 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds