Wall clock time and date at job start Mon Mar 30 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35173 * 125.84932 * 2 1 4 4 C 1.39973 * 107.21801 * 179.97438 * 3 2 1 5 5 C 1.35567 * 107.65949 * 0.13789 * 4 3 2 6 6 N 1.35542 * 108.15476 * 359.79875 * 5 4 3 7 7 C 1.46493 * 125.65419 * 180.16794 * 6 5 4 8 8 C 1.50871 * 123.21747 * 179.79892 * 5 4 3 9 9 H 1.09002 * 109.70186 * 103.15863 * 8 5 4 10 10 C 1.53004 * 109.70139 * 223.72320 * 8 5 4 11 11 C 1.50698 * 109.46876 * 184.43506 * 10 8 5 12 12 H 1.07997 * 120.00348 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99734 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00020 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99969 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47181 * 89.99540 * 15 13 11 17 17 H 1.48497 * 109.47218 * 209.99970 * 15 13 11 18 18 H 1.48503 * 109.47420 * 330.00001 * 15 13 11 19 19 N 1.47272 * 108.31774 * 343.43986 * 8 5 4 20 20 C 1.46951 * 111.49427 * 51.45345 * 19 8 5 21 21 C 1.50790 * 128.91162 * 180.14036 * 4 3 2 22 22 H 1.08990 * 109.46924 * 90.02292 * 1 2 3 23 23 H 1.09000 * 109.46983 * 210.02821 * 1 2 3 24 24 H 1.09005 * 109.46494 * 330.02302 * 1 2 3 25 25 H 1.07997 * 126.38980 * 359.95436 * 3 2 1 26 26 H 1.09007 * 109.47164 * 269.99840 * 7 6 5 27 27 H 1.08996 * 109.47121 * 29.99790 * 7 6 5 28 28 H 1.09004 * 109.47089 * 150.00254 * 7 6 5 29 29 H 1.09000 * 109.47010 * 304.42934 * 10 8 5 30 30 H 1.08993 * 109.47077 * 64.43522 * 10 8 5 31 31 H 0.96997 * 119.99894 * 180.02562 * 14 13 11 32 32 H 1.00897 * 111.00235 * 175.77321 * 19 8 5 33 33 H 1.09004 * 109.45026 * 48.63962 * 20 19 8 34 34 H 1.09003 * 109.44897 * 168.57880 * 20 19 8 35 35 H 1.08996 * 109.78816 * 44.69800 * 21 4 3 36 36 H 1.08998 * 109.78537 * 283.86310 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2987 1.0957 0.0000 4 6 3.6251 0.6485 0.0006 5 6 3.6021 -0.7070 -0.0022 6 7 2.3072 -1.1074 0.0001 7 6 1.8431 -2.4969 0.0018 8 6 4.8501 -1.5548 -0.0069 9 1 5.0251 -1.9566 0.9911 10 6 4.6894 -2.7037 -1.0045 11 6 5.8921 -3.6084 -0.9266 12 1 6.6912 -3.3860 -0.2351 13 6 5.9726 -4.7196 -1.7390 14 7 4.9996 -4.9901 -2.5814 15 14 7.4636 -5.8407 -1.6430 16 1 7.2201 -6.9029 -0.6342 17 1 7.7010 -6.4633 -2.9700 18 1 8.6551 -5.0471 -1.2483 19 7 5.9850 -0.7055 -0.4063 20 6 6.0487 0.5220 0.3991 21 6 4.8974 1.4577 0.0037 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8897 0.5143 24 1 -0.3632 0.8903 0.5135 25 1 1.9693 2.1242 -0.0007 26 1 1.7263 -2.8423 -1.0255 27 1 2.5728 -3.1231 0.5149 28 1 0.8845 -2.5592 0.5171 29 1 3.7911 -3.2718 -0.7628 30 1 4.6034 -2.2996 -2.0131 31 1 5.0561 -5.7720 -3.1527 32 1 6.8538 -1.2161 -0.3566 33 1 5.9633 0.2677 1.4556 34 1 7.0003 1.0232 0.2223 35 1 4.8167 2.2694 0.7267 36 1 5.0780 1.8651 -0.9910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:31 Heat of formation + Delta-G solvation = 21.132599 kcal Electronic energy + Delta-G solvation = -16876.305023 eV Core-core repulsion = 14359.767673 eV Total energy + Delta-G solvation = -2516.537350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44514 -38.15195 -35.62025 -34.14848 -32.26070 -31.93481 -29.72176 -27.76348 -26.90585 -24.89417 -23.20794 -22.08898 -20.68588 -19.02158 -18.44058 -17.44887 -16.65246 -16.29346 -15.93350 -15.69511 -15.45645 -14.62222 -14.42486 -13.93780 -13.78385 -13.62786 -13.46176 -13.24024 -13.15217 -13.02778 -12.83854 -12.68785 -12.41996 -12.26373 -12.01782 -11.68844 -11.25989 -11.07957 -10.53860 -9.36587 -9.18398 -8.50051 -8.17644 -6.27673 1.36260 1.40761 1.41980 1.52521 2.09827 2.13160 2.41670 3.13646 3.43676 3.91296 3.99655 4.11811 4.24181 4.29686 4.38474 4.46886 4.53500 4.63061 4.66832 4.72396 4.84685 4.86287 5.00050 5.01452 5.12720 5.27116 5.38753 5.45518 5.55821 5.64493 5.80498 6.14071 6.26396 6.31771 6.45982 6.62115 6.70010 6.85062 7.39837 8.93411 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.007925 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.131857 B = 3532.275924 C = 4350.805921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.208 4.208 4 C -0.185 4.185 5 C -0.007 4.007 6 N -0.437 5.437 7 C 0.073 3.927 8 C 0.176 3.824 9 H 0.023 0.977 10 C 0.040 3.960 11 C -0.529 4.529 12 H 0.059 0.941 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.263 1.263 19 N -0.686 5.686 20 C 0.058 3.942 21 C -0.036 4.036 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.153 0.847 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.018 0.982 30 H -0.018 1.018 31 H 0.262 0.738 32 H 0.351 0.649 33 H 0.024 0.976 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 9.717 7.287 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.118 4.118 3 C -0.232 4.232 4 C -0.192 4.192 5 C -0.120 4.120 6 N -0.112 5.112 7 C -0.068 4.068 8 C 0.066 3.934 9 H 0.041 0.959 10 C 0.002 3.998 11 C -0.567 4.567 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.187 1.187 19 N -0.320 5.320 20 C -0.071 4.071 21 C -0.074 4.074 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.171 0.829 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.036 0.964 30 H 0.000 1.000 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.244 9.525 6.659 13.193 hybrid contribution 1.064 -1.399 0.387 1.800 sum -5.180 8.126 7.046 11.937 Atomic orbital electron populations 1.20336 0.85493 1.04150 1.03042 1.21093 0.94997 0.85051 1.10683 1.20544 0.91558 0.98263 1.12807 1.19664 0.96065 0.92322 1.11121 1.20437 0.85433 0.94971 1.11166 1.43636 1.05039 1.06750 1.55822 1.22143 1.01938 0.79635 1.03080 1.19802 0.86567 0.91102 0.95963 0.95901 1.19107 0.96708 0.91214 0.92748 1.21476 1.05233 1.08875 1.21155 0.92238 1.25865 0.99209 0.99439 0.94810 1.70090 1.34333 1.28157 1.24512 0.85489 0.79719 0.78784 0.77283 1.19930 1.21195 1.18702 1.60083 1.06090 1.07900 1.57910 1.22081 0.99762 0.91107 0.94176 1.20105 0.89678 0.96087 1.01501 0.90843 0.91010 0.88481 0.82949 0.92060 0.90800 0.87027 0.96424 0.99977 0.92936 0.82962 0.95733 0.88672 0.89212 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.11 71.24 0.72 -0.85 16 2 C -0.01 -0.22 6.90 41.11 0.28 0.06 16 3 C -0.21 -6.86 10.75 21.98 0.24 -6.63 16 4 C -0.19 -6.99 6.02 -20.03 -0.12 -7.11 16 5 C -0.01 -0.29 6.26 41.42 0.26 -0.03 16 6 N -0.44 -16.46 3.14 -518.02 -1.62 -18.09 16 7 C 0.07 2.47 9.15 127.77 1.17 3.64 16 8 C 0.18 7.99 2.59 44.15 0.11 8.10 16 9 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 10 C 0.04 2.12 4.43 29.85 0.13 2.25 16 11 C -0.53 -29.54 8.57 25.60 0.22 -29.32 16 12 H 0.06 3.16 7.19 -2.91 -0.02 3.14 16 13 C 0.00 0.26 5.46 84.66 0.46 0.73 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 19 N -0.69 -28.32 6.39 -493.23 -3.15 -31.47 16 20 C 0.06 1.87 6.52 86.47 0.56 2.44 16 21 C -0.04 -1.13 6.51 30.06 0.20 -0.94 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.07 1.35 7.06 -2.39 -0.02 1.33 16 24 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 26 H 0.06 2.23 7.96 -2.38 -0.02 2.22 16 27 H 0.07 2.73 6.67 -2.39 -0.02 2.71 16 28 H 0.11 2.75 7.03 -2.38 -0.02 2.73 16 29 H 0.02 0.96 4.69 -2.39 -0.01 0.95 16 30 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.35 14.32 7.81 -89.70 -0.70 13.62 16 33 H 0.02 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.00 286.79 2.14 -65.86 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.37 Total: 21.21 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.24 Total: -27.67 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.49 Total: -105.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.00 2.14 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.995 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds