Wall clock time and date at job start Mon Mar 30 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36940 * 120.00372 * 2 1 4 4 H 1.07996 * 120.00524 * 201.86634 * 3 2 1 5 5 C 1.38814 * 119.99508 * 21.86402 * 3 2 1 6 6 N 1.31619 * 120.00398 * 13.14018 * 5 3 2 7 7 Si 1.86806 * 119.99877 * 193.13414 * 5 3 2 8 8 H 1.48496 * 109.46824 * 90.00516 * 7 5 3 9 9 H 1.48499 * 109.46890 * 209.99993 * 7 5 3 10 10 H 1.48493 * 109.47110 * 330.00652 * 7 5 3 11 11 C 1.46500 * 120.00352 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.77232 * 179.33319 * 11 2 1 13 13 C 1.53426 * 109.73326 * 58.65917 * 11 2 1 14 14 C 1.53005 * 109.82356 * 189.70554 * 13 11 2 15 15 C 1.53420 * 109.82098 * 71.94457 * 14 13 11 16 16 C 1.50796 * 108.11956 * 309.35305 * 15 14 13 17 17 C 1.33976 * 128.95045 * 196.71474 * 16 15 14 18 18 N 1.36657 * 108.05397 * 179.68140 * 17 16 15 19 19 C 1.46502 * 125.59760 * 180.02562 * 18 17 16 20 20 C 1.36658 * 108.80139 * 0.27002 * 18 17 16 21 21 C 1.33975 * 108.05403 * 359.72192 * 20 18 17 22 22 H 1.09000 * 109.47140 * 274.36596 * 1 2 3 23 23 H 1.09001 * 109.47276 * 34.36140 * 1 2 3 24 24 H 1.08998 * 109.47495 * 154.36817 * 1 2 3 25 25 H 0.96993 * 120.00524 * 179.97438 * 6 5 3 26 26 H 1.09002 * 109.41109 * 309.81252 * 13 11 2 27 27 H 1.09003 * 109.40844 * 69.66716 * 13 11 2 28 28 H 1.08997 * 109.41014 * 192.05807 * 14 13 11 29 29 H 1.09002 * 109.40960 * 311.90770 * 14 13 11 30 30 H 1.08993 * 109.73333 * 69.01229 * 15 14 13 31 31 H 1.08996 * 109.73012 * 189.69927 * 15 14 13 32 32 H 1.07998 * 125.97299 * 359.64987 * 17 16 15 33 33 H 1.08999 * 109.46737 * 89.98401 * 19 18 17 34 34 H 1.09002 * 109.46979 * 209.97616 * 19 18 17 35 35 H 1.08993 * 109.46963 * 329.97973 * 19 18 17 36 36 H 1.07997 * 125.97504 * 179.85162 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1714 1.2196 -0.3483 5 6 1.5305 2.3448 0.4477 6 7 0.3938 2.2711 1.1071 7 14 2.3106 4.0091 0.1145 8 1 1.8119 4.5392 -1.1799 9 1 1.9531 4.9507 1.2057 10 1 3.7868 3.8603 0.0526 11 6 2.1975 -1.2687 -0.0006 12 1 3.2700 -1.0751 -0.0124 13 6 1.8060 -2.0924 -1.2344 14 6 2.3778 -3.5067 -1.1168 15 6 1.6092 -4.2911 -0.0454 16 6 1.5634 -3.4526 1.2071 17 6 1.2781 -3.8272 2.4614 18 7 1.3678 -2.7244 3.2635 19 6 1.1320 -2.7000 4.7092 20 6 1.7083 -1.6471 2.4947 21 6 1.8374 -2.0650 1.2283 22 1 -0.3633 0.0782 1.0247 23 1 -0.3634 0.8483 -0.5800 24 1 -0.3634 -0.9265 -0.4445 25 1 -0.0387 3.0808 1.4203 26 1 0.7196 -2.1455 -1.3047 27 1 2.2042 -1.6150 -2.1298 28 1 2.2841 -4.0161 -2.0758 29 1 3.4300 -3.4501 -0.8379 30 1 0.5953 -4.4908 -0.3919 31 1 2.1206 -5.2315 0.1598 32 1 1.0215 -4.8259 2.7824 33 1 2.0675 -2.8955 5.2332 34 1 0.7513 -1.7205 4.9988 35 1 0.4018 -3.4656 4.9712 36 1 1.8506 -0.6361 2.8467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260867577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:15 Heat of formation + Delta-G solvation = 70.746803 kcal Electronic energy + Delta-G solvation = -17085.509096 eV Core-core repulsion = 14571.123180 eV Total energy + Delta-G solvation = -2514.385916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72007 -36.67520 -34.40974 -31.43719 -31.33354 -28.96390 -26.58332 -26.21781 -25.74888 -23.08122 -21.14971 -20.48051 -19.15199 -17.52484 -16.57479 -16.09415 -14.94364 -14.63288 -14.03026 -13.90557 -13.53100 -13.29343 -12.59222 -12.40459 -12.20992 -12.11097 -11.93101 -11.39723 -11.30820 -10.97673 -10.88652 -10.70845 -10.33923 -10.28053 -10.14270 -9.85632 -9.65614 -9.39827 -8.41858 -7.56922 -7.32159 -6.59227 -5.58952 -3.02909 2.94039 3.44426 3.50781 3.51721 3.55148 3.73860 4.60946 5.06053 5.40139 5.42624 5.50412 5.55947 5.58234 5.59413 5.62423 5.93521 6.03421 6.20814 6.26093 6.30651 6.44651 6.47316 6.56638 6.68106 6.79327 7.02770 7.14279 7.22619 7.26734 7.58694 7.80511 7.87997 7.95513 8.02121 8.10369 8.54633 9.38719 10.04202 10.54861 11.45005 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.008911 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.385369 B = 3141.343463 C = 3863.601032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.592 5.592 3 C -0.246 4.246 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.909 5.909 7 Si 0.900 3.100 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.281 1.281 11 C 0.244 3.756 12 H 0.063 0.937 13 C -0.127 4.127 14 C -0.110 4.110 15 C -0.040 4.040 16 C -0.168 4.168 17 C -0.031 4.031 18 N -0.469 5.469 19 C 0.082 3.918 20 C 0.021 3.979 21 C -0.161 4.161 22 H 0.024 0.976 23 H 0.037 0.963 24 H -0.002 1.002 25 H 0.249 0.751 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -11.990 2.716 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.313 5.313 3 C -0.375 4.375 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.731 3.269 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.206 1.206 11 C 0.135 3.865 12 H 0.081 0.919 13 C -0.166 4.166 14 C -0.148 4.148 15 C -0.077 4.077 16 C -0.176 4.176 17 C -0.159 4.159 18 N -0.147 5.147 19 C -0.060 4.060 20 C -0.106 4.106 21 C -0.169 4.169 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.289 -11.806 3.159 12.289 hybrid contribution 0.186 1.016 0.140 1.042 sum 1.474 -10.790 3.300 11.379 Atomic orbital electron populations 1.20640 0.82790 0.95030 0.98894 1.43958 1.01775 1.00019 1.85529 1.19281 0.97598 0.85406 1.35258 0.91502 1.24961 0.97961 0.98144 0.98865 1.70094 1.18760 1.26532 1.40068 0.86307 0.78699 0.84562 0.77311 1.21706 1.22012 1.20628 1.18812 0.94953 0.84571 0.88161 0.91892 1.22024 1.01039 0.94186 0.99368 1.21496 0.99675 0.96309 0.97307 1.19939 0.99432 0.96139 0.92222 1.19422 1.09420 0.95213 0.93557 1.21005 1.12839 0.91415 0.90608 1.44012 1.55865 1.08154 1.06694 1.21819 1.01404 1.03650 0.79145 1.21438 1.06750 0.91605 0.90845 1.20370 1.07800 0.93322 0.95451 0.95738 0.94430 0.98379 0.94077 0.92186 0.92672 0.92986 0.92403 0.92278 0.92568 0.83467 0.91971 0.90260 0.90868 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.46 8.32 59.84 0.50 4.95 16 2 N -0.59 -15.29 2.72 -174.51 -0.47 -15.76 16 3 C -0.25 -6.85 9.61 -15.06 -0.14 -7.00 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 -0.05 5.09 -17.43 -0.09 -0.14 16 6 N -0.91 -26.78 10.65 55.49 0.59 -26.19 16 7 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.24 5.40 2.96 -68.81 -0.20 5.19 16 12 H 0.06 1.43 7.87 -51.93 -0.41 1.02 16 13 C -0.13 -2.41 5.28 -26.51 -0.14 -2.55 16 14 C -0.11 -1.71 5.86 -26.51 -0.16 -1.87 16 15 C -0.04 -0.61 6.30 -27.62 -0.17 -0.78 16 16 C -0.17 -3.05 5.92 -104.85 -0.62 -3.67 16 17 C -0.03 -0.51 11.41 -16.90 -0.19 -0.71 16 18 N -0.47 -8.01 3.16 -124.84 -0.39 -8.41 16 19 C 0.08 1.01 11.12 59.85 0.67 1.68 16 20 C 0.02 0.45 11.25 -16.90 -0.19 0.26 16 21 C -0.16 -3.39 5.08 -104.85 -0.53 -3.92 16 22 H 0.02 0.69 7.41 -51.93 -0.38 0.31 16 23 H 0.04 1.04 7.21 -51.93 -0.37 0.67 16 24 H 0.00 -0.05 6.24 -51.93 -0.32 -0.38 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.20 6.27 -51.93 -0.33 0.88 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.16 3.66 8.06 -52.49 -0.42 3.24 16 LS Contribution 287.96 15.07 4.34 4.34 Total: -1.00 -30.89 287.96 -7.83 -38.72 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.59 Total: -1.33 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.28 Total: -8.56 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.28 Total: -50.36 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.89 -7.83 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.470 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds