Wall clock time and date at job start Mon Mar 30 2020 04:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36940 * 120.00372 * 2 1 4 4 H 1.07996 * 120.00524 * 201.86634 * 3 2 1 5 5 C 1.38814 * 119.99508 * 21.86402 * 3 2 1 6 6 N 1.31619 * 120.00398 * 13.14018 * 5 3 2 7 7 Si 1.86806 * 119.99877 * 193.13414 * 5 3 2 8 8 H 1.48496 * 109.46824 * 90.00516 * 7 5 3 9 9 H 1.48499 * 109.46890 * 209.99993 * 7 5 3 10 10 H 1.48493 * 109.47110 * 330.00652 * 7 5 3 11 11 C 1.46500 * 120.00352 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.77232 * 179.33319 * 11 2 1 13 13 C 1.53426 * 109.73326 * 58.65917 * 11 2 1 14 14 C 1.53005 * 109.82356 * 189.70554 * 13 11 2 15 15 C 1.53420 * 109.82098 * 71.94457 * 14 13 11 16 16 C 1.50796 * 108.11956 * 309.35305 * 15 14 13 17 17 C 1.33976 * 128.95045 * 196.71474 * 16 15 14 18 18 N 1.36657 * 108.05397 * 179.68140 * 17 16 15 19 19 C 1.46502 * 125.59760 * 180.02562 * 18 17 16 20 20 C 1.36658 * 108.80139 * 0.27002 * 18 17 16 21 21 C 1.33975 * 108.05403 * 359.72192 * 20 18 17 22 22 H 1.09000 * 109.47140 * 274.36596 * 1 2 3 23 23 H 1.09001 * 109.47276 * 34.36140 * 1 2 3 24 24 H 1.08998 * 109.47495 * 154.36817 * 1 2 3 25 25 H 0.96993 * 120.00524 * 179.97438 * 6 5 3 26 26 H 1.09002 * 109.41109 * 309.81252 * 13 11 2 27 27 H 1.09003 * 109.40844 * 69.66716 * 13 11 2 28 28 H 1.08997 * 109.41014 * 192.05807 * 14 13 11 29 29 H 1.09002 * 109.40960 * 311.90770 * 14 13 11 30 30 H 1.08993 * 109.73333 * 69.01229 * 15 14 13 31 31 H 1.08996 * 109.73012 * 189.69927 * 15 14 13 32 32 H 1.07998 * 125.97299 * 359.64987 * 17 16 15 33 33 H 1.08999 * 109.46737 * 89.98401 * 19 18 17 34 34 H 1.09002 * 109.46979 * 209.97616 * 19 18 17 35 35 H 1.08993 * 109.46963 * 329.97973 * 19 18 17 36 36 H 1.07997 * 125.97504 * 179.85162 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1714 1.2196 -0.3483 5 6 1.5305 2.3448 0.4477 6 7 0.3938 2.2711 1.1071 7 14 2.3106 4.0091 0.1145 8 1 1.8119 4.5392 -1.1799 9 1 1.9531 4.9507 1.2057 10 1 3.7868 3.8603 0.0526 11 6 2.1975 -1.2687 -0.0006 12 1 3.2700 -1.0751 -0.0124 13 6 1.8060 -2.0924 -1.2344 14 6 2.3778 -3.5067 -1.1168 15 6 1.6092 -4.2911 -0.0454 16 6 1.5634 -3.4526 1.2071 17 6 1.2781 -3.8272 2.4614 18 7 1.3678 -2.7244 3.2635 19 6 1.1320 -2.7000 4.7092 20 6 1.7083 -1.6471 2.4947 21 6 1.8374 -2.0650 1.2283 22 1 -0.3633 0.0782 1.0247 23 1 -0.3634 0.8483 -0.5800 24 1 -0.3634 -0.9265 -0.4445 25 1 -0.0387 3.0808 1.4203 26 1 0.7196 -2.1455 -1.3047 27 1 2.2042 -1.6150 -2.1298 28 1 2.2841 -4.0161 -2.0758 29 1 3.4300 -3.4501 -0.8379 30 1 0.5953 -4.4908 -0.3919 31 1 2.1206 -5.2315 0.1598 32 1 1.0215 -4.8259 2.7824 33 1 2.0675 -2.8955 5.2332 34 1 0.7513 -1.7205 4.9988 35 1 0.4018 -3.4656 4.9712 36 1 1.8506 -0.6361 2.8467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:14 Heat of formation + Delta-G solvation = 53.868397 kcal Electronic energy + Delta-G solvation = -17086.240999 eV Core-core repulsion = 14571.123180 eV Total energy + Delta-G solvation = -2515.117819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.12409 -38.32212 -36.14424 -33.30222 -32.64804 -30.69054 -28.08297 -27.94223 -27.44263 -24.83842 -22.60944 -22.09780 -20.61934 -19.02562 -18.64461 -17.53271 -16.80502 -16.04283 -15.60113 -15.37922 -15.13115 -14.72571 -14.40742 -14.10999 -13.66249 -13.42039 -13.22282 -12.95058 -12.80367 -12.77193 -12.76580 -12.43340 -12.25019 -12.04699 -11.98139 -11.50418 -11.37910 -11.02316 -10.57432 -8.99739 -8.78789 -8.66077 -7.76320 -5.22724 1.45751 1.47294 1.55090 1.56417 2.20788 2.30961 2.55594 3.35429 3.77105 4.02686 4.21523 4.29173 4.34149 4.43960 4.48192 4.50866 4.69590 4.76093 4.82563 4.85509 4.96989 5.06997 5.12562 5.20971 5.24536 5.37521 5.39722 5.61339 5.68800 5.72291 5.77528 5.81826 6.34375 6.36999 6.54052 6.78376 7.21479 7.96232 8.42233 9.26234 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.008911 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.385369 B = 3141.343463 C = 3863.601032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.296 1.296 10 H -0.270 1.270 11 C 0.236 3.764 12 H 0.047 0.953 13 C -0.118 4.118 14 C -0.103 4.103 15 C -0.035 4.035 16 C -0.189 4.189 17 C -0.012 4.012 18 N -0.467 5.467 19 C 0.075 3.925 20 C -0.009 4.009 21 C -0.182 4.182 22 H -0.006 1.006 23 H 0.011 0.989 24 H 0.018 0.982 25 H 0.245 0.755 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.192 0.808 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -14.453 2.726 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.325 5.325 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.215 1.215 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.129 3.871 12 H 0.065 0.935 13 C -0.157 4.157 14 C -0.141 4.141 15 C -0.073 4.073 16 C -0.196 4.196 17 C -0.141 4.141 18 N -0.144 5.144 19 C -0.066 4.066 20 C -0.138 4.138 21 C -0.191 4.191 22 H 0.013 0.987 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.209 0.791 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.704 -14.302 3.178 14.750 hybrid contribution 0.087 1.728 0.199 1.741 sum 1.791 -12.574 3.377 13.142 Atomic orbital electron populations 1.20247 0.83261 0.94749 0.96663 1.44125 1.01683 1.01021 1.85663 1.19582 0.97749 0.86627 1.34714 0.91507 1.25709 0.98684 1.01458 0.99036 1.70267 1.20115 1.26940 1.41222 0.85274 0.78343 0.80127 0.76773 1.21453 1.22266 1.19471 1.18982 0.93676 0.83797 0.90651 0.93531 1.21896 1.00350 0.96155 0.97304 1.21462 0.99381 0.94027 0.99251 1.20003 1.00191 0.96628 0.90460 1.19783 1.10208 0.93955 0.95684 1.21694 1.09988 0.92551 0.89862 1.44250 1.54567 1.07198 1.08387 1.22130 1.03399 1.04520 0.76536 1.21053 1.09369 0.91503 0.91923 1.20327 1.08873 0.95146 0.94725 0.98728 0.97034 0.96318 0.94604 0.93283 0.93091 0.90019 0.92454 0.91491 0.89531 0.79074 0.90000 0.91000 0.87627 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.60 8.32 127.77 1.06 11.67 16 2 N -0.60 -32.30 2.72 -706.03 -1.92 -34.22 16 3 C -0.26 -14.78 9.61 84.03 0.81 -13.98 16 4 H 0.07 3.77 7.82 -2.91 -0.02 3.74 16 5 C -0.05 -3.16 5.09 84.86 0.43 -2.72 16 6 N -0.94 -57.47 10.65 21.65 0.23 -57.24 16 7 Si 0.97 46.76 29.57 68.60 2.03 48.79 16 8 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 C 0.24 10.68 2.96 44.42 0.13 10.81 16 12 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 13 C -0.12 -4.41 5.28 30.74 0.16 -4.24 16 14 C -0.10 -2.94 5.86 30.74 0.18 -2.76 16 15 C -0.04 -0.95 6.30 30.02 0.19 -0.76 16 16 C -0.19 -6.43 5.92 -20.01 -0.12 -6.55 16 17 C -0.01 -0.37 11.41 82.97 0.95 0.58 16 18 N -0.47 -15.29 3.16 -548.88 -1.74 -17.03 16 19 C 0.07 1.68 11.12 127.77 1.42 3.10 16 20 C -0.01 -0.39 11.25 82.97 0.93 0.55 16 21 C -0.18 -7.71 5.08 -20.01 -0.10 -7.81 16 22 H -0.01 -0.33 7.41 -2.39 -0.02 -0.35 16 23 H 0.01 0.64 7.21 -2.39 -0.02 0.62 16 24 H 0.02 0.91 6.24 -2.39 -0.01 0.89 16 25 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.05 1.92 6.27 -2.39 -0.01 1.91 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.13 6.18 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -69.28 287.96 5.69 -63.59 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.04 Total: 8.23 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 6.05 Total: -12.13 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.42 Total: -108.48 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -69.28 5.69 -63.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.458 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds