Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31920 * 120.53263 * 2 1 4 4 C 1.32818 * 121.23184 * 179.97438 * 3 2 1 5 5 N 1.37971 * 118.85400 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00232 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.50367 * 223.75074 * 6 5 4 8 8 C 1.52999 * 117.50062 * 155.08704 * 6 5 4 9 9 N 1.32611 * 122.29110 * 359.97438 * 4 3 2 10 10 C 1.32588 * 120.89149 * 359.70683 * 9 4 3 11 11 N 1.37817 * 120.66090 * 180.31019 * 10 9 4 12 12 C 1.40917 * 120.52810 * 179.97438 * 2 1 3 13 13 C 1.40986 * 121.01748 * 0.02562 * 12 2 1 14 14 H 1.07996 * 120.00067 * 313.88198 * 13 12 2 15 15 C 1.39867 * 119.99868 * 134.16226 * 13 12 2 16 16 N 1.30948 * 119.99860 * 341.45627 * 15 13 12 17 17 Si 1.86796 * 119.99917 * 161.45364 * 15 13 12 18 18 H 1.48507 * 109.47229 * 60.00145 * 17 15 13 19 19 H 1.48508 * 109.47139 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47474 * 300.00053 * 17 15 13 21 21 H 1.09000 * 109.47032 * 270.02425 * 1 2 3 22 22 H 1.08997 * 109.47261 * 30.01836 * 1 2 3 23 23 H 1.08997 * 109.47708 * 150.02478 * 1 2 3 24 24 H 0.97004 * 120.00161 * 0.02562 * 5 4 3 25 25 H 1.09010 * 115.54735 * 9.42697 * 6 5 4 26 26 H 1.08998 * 117.49371 * 359.97438 * 7 6 5 27 27 H 1.08996 * 117.50123 * 145.02169 * 7 6 5 28 28 H 1.08998 * 117.49893 * 214.98526 * 8 6 5 29 29 H 1.09005 * 117.49782 * 0.02562 * 8 6 5 30 30 H 0.97003 * 120.00364 * 171.26908 * 11 10 9 31 31 H 0.97010 * 120.00146 * 351.26452 * 11 10 9 32 32 H 0.97006 * 119.99629 * 175.06928 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1771 1.1363 0.0000 4 6 3.5052 1.1525 0.0005 5 7 4.1562 2.3689 -0.0001 6 6 5.6204 2.4162 0.0010 7 6 6.2942 3.4196 0.9391 8 6 6.2873 3.6686 -0.5712 9 7 4.2273 0.0402 0.0015 10 6 3.6436 -1.1503 0.0079 11 7 4.3986 -2.3032 0.0154 12 6 2.2227 -1.2138 0.0005 13 6 1.5510 -2.4534 0.0006 14 1 0.7234 -2.6191 0.6744 15 6 1.9601 -3.4705 -0.8680 16 7 2.6973 -3.1832 -1.9115 17 14 1.4549 -5.2386 -0.5395 18 1 -0.0268 -5.3388 -0.5424 19 1 2.0120 -6.1176 -1.5989 20 1 1.9772 -5.6650 0.7836 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5134 24 1 3.6444 3.1930 -0.0004 25 1 6.1217 1.4615 -0.1588 26 1 5.6481 4.0449 1.5552 27 1 7.2389 3.1252 1.3962 28 1 7.2274 3.5380 -1.1071 29 1 5.6365 4.4577 -0.9482 30 1 3.9697 -3.1631 0.1475 31 1 5.3592 -2.2548 -0.1116 32 1 3.0406 -3.8954 -2.4735 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260875739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 56.301950 kcal Electronic energy + Delta-G solvation = -16255.505674 eV Core-core repulsion = 13636.953038 eV Total energy + Delta-G solvation = -2618.552636 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07439 -38.60775 -36.60401 -35.37435 -34.16537 -32.14830 -31.04888 -29.18012 -26.25814 -23.48565 -23.24311 -23.13565 -21.50858 -19.43148 -18.61510 -18.31758 -16.81117 -16.66017 -16.11121 -15.66707 -15.44202 -15.07725 -15.06140 -13.81489 -13.65409 -13.55125 -13.38765 -13.05851 -12.79879 -12.69109 -12.52896 -12.33674 -12.18097 -11.69580 -11.28714 -11.17386 -10.81317 -10.23923 -9.52563 -9.14816 -8.54557 -8.11883 -6.07667 0.92737 1.18149 1.48861 1.53313 1.57511 2.28148 2.34199 2.87642 3.11173 3.18912 3.75339 3.95746 4.10767 4.22381 4.24775 4.42720 4.74689 4.81182 4.93684 5.00879 5.03167 5.10864 5.28949 5.31105 5.47965 5.57068 5.82870 6.25227 6.42202 6.47587 6.75755 6.97000 7.07797 7.13366 7.50049 8.15781 8.59688 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.037727 B = 0.007248 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.003073 B = 3862.306691 C = 4381.947653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.089 3.911 3 N -0.609 5.609 4 C 0.508 3.492 5 N -0.680 5.680 6 C 0.086 3.914 7 C -0.189 4.189 8 C -0.180 4.180 9 N -0.632 5.632 10 C 0.419 3.581 11 N -0.810 5.810 12 C -0.089 4.089 13 C -0.490 4.490 14 H 0.073 0.927 15 C 0.039 3.961 16 N -0.844 5.844 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.259 1.259 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.408 0.592 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.407 0.593 31 H 0.391 0.609 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 4.399 2.864 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 N -0.337 5.337 4 C 0.150 3.850 5 N -0.319 5.319 6 C -0.022 4.022 7 C -0.228 4.228 8 C -0.219 4.219 9 N -0.366 5.366 10 C 0.169 3.831 11 N -0.354 5.354 12 C -0.101 4.101 13 C -0.524 4.524 14 H 0.091 0.909 15 C -0.172 4.172 16 N -0.474 5.474 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.183 1.183 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.245 0.755 25 H 0.132 0.868 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.240 0.760 31 H 0.220 0.780 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.131 5.112 2.622 7.703 hybrid contribution -0.521 -1.594 -0.135 1.682 sum 4.611 3.518 2.487 6.310 Atomic orbital electron populations 1.20228 0.88073 1.01879 1.01749 1.21757 0.97023 0.86926 0.99466 1.67150 1.07245 1.31865 1.27419 1.18723 0.85040 0.86038 0.95157 1.42810 1.04242 1.02710 1.82182 1.21389 0.79662 0.95824 1.05286 1.23487 1.03047 1.03151 0.93159 1.23456 1.03035 0.99083 0.96277 1.66813 1.41126 0.97422 1.31288 1.18852 0.89169 0.85565 0.89469 1.41528 1.08652 1.05432 1.79786 1.18525 0.91204 0.95554 1.04774 1.18833 1.17221 0.96786 1.19554 0.90937 1.26284 0.94667 1.03564 0.92642 1.69999 1.30599 1.35608 1.11215 0.85584 0.79435 0.77940 0.78747 1.19350 1.20431 1.18329 0.91191 0.91823 0.91269 0.75513 0.86768 0.88611 0.87221 0.86849 0.88141 0.76029 0.78021 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.60 9.82 71.23 0.70 -1.90 16 2 C 0.09 4.50 6.89 43.20 0.30 4.80 16 3 N -0.61 -30.38 10.35 -184.52 -1.91 -32.29 16 4 C 0.51 24.36 8.41 261.51 2.20 26.56 16 5 N -0.68 -25.86 5.70 -330.48 -1.88 -27.74 16 6 C 0.09 2.72 6.43 44.99 0.29 3.01 16 7 C -0.19 -4.49 10.46 30.62 0.32 -4.17 16 8 C -0.18 -4.13 10.46 30.62 0.32 -3.81 16 9 N -0.63 -31.27 9.05 -194.21 -1.76 -33.03 16 10 C 0.42 21.39 7.36 134.18 0.99 22.38 16 11 N -0.81 -35.79 7.89 -54.05 -0.43 -36.21 16 12 C -0.09 -4.74 5.26 -20.96 -0.11 -4.85 16 13 C -0.49 -24.97 7.28 23.34 0.17 -24.80 16 14 H 0.07 3.61 7.86 -2.91 -0.02 3.58 16 15 C 0.04 1.87 3.52 85.22 0.30 2.17 16 16 N -0.84 -42.93 11.76 21.82 0.26 -42.67 16 17 Si 0.96 36.75 29.60 68.60 2.03 38.78 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.07 2.96 7.21 -2.39 -0.02 2.94 16 24 H 0.41 13.93 8.93 -92.71 -0.83 13.10 16 25 H 0.11 4.11 7.26 -2.38 -0.02 4.09 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.41 17.80 6.25 -92.71 -0.58 17.22 16 31 H 0.39 15.25 8.95 -92.70 -0.83 14.42 16 32 H 0.28 13.17 8.31 -92.70 -0.77 12.40 16 Total: -1.00 -61.02 275.18 0.72 -60.30 By element: Atomic # 1 Polarization: 54.53 SS G_CDS: -1.06 Total: 53.47 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 5.47 Total: 19.39 kcal Atomic # 7 Polarization: -166.22 SS G_CDS: -5.72 Total: -171.94 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -61.02 0.72 -60.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260875739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.600 kcal (2) G-P(sol) polarization free energy of solvation -61.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds