Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00371 * 2 1 4 4 H 1.48500 * 109.47284 * 239.99700 * 3 2 1 5 5 H 1.48490 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47104 * 120.00287 * 3 2 1 7 7 C 1.37890 * 119.99428 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99382 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00002 * 359.97438 * 7 2 1 10 10 H 1.08997 * 108.86907 * 61.41095 * 9 7 2 11 11 C 1.51455 * 108.89147 * 302.91612 * 9 7 2 12 12 C 1.50105 * 112.28523 * 294.16756 * 11 9 7 13 13 C 1.48731 * 116.27357 * 316.10856 * 12 11 9 14 14 H 1.09002 * 105.80268 * 146.76901 * 13 12 11 15 15 N 1.46175 * 114.21089 * 261.82655 * 13 12 11 16 16 C 1.28775 * 108.99962 * 140.10609 * 15 13 12 17 17 C 1.50698 * 122.78317 * 179.01461 * 16 15 13 18 18 C 1.52998 * 117.49761 * 43.61739 * 17 16 15 19 19 C 1.53001 * 60.00333 * 252.51348 * 18 17 16 20 20 N 1.36441 * 114.43643 * 359.00842 * 16 15 13 21 21 C 1.48548 * 107.88687 * 354.65091 * 20 16 15 22 22 H 1.09000 * 110.65239 * 125.85007 * 21 20 16 23 23 C 1.50718 * 108.89169 * 180.02562 * 9 7 2 24 24 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 25 25 H 1.09003 * 108.99895 * 55.49724 * 11 9 7 26 26 H 1.09002 * 109.00001 * 174.25122 * 11 9 7 27 27 H 1.08999 * 108.37871 * 193.97601 * 12 11 9 28 28 H 1.08998 * 107.47388 * 77.52761 * 12 11 9 29 29 H 1.08997 * 115.55028 * 189.32621 * 17 16 15 30 30 H 1.09001 * 117.50520 * 0.02562 * 18 17 16 31 31 H 1.09006 * 117.49998 * 145.02897 * 18 17 16 32 32 H 1.09000 * 117.50175 * 252.51696 * 19 18 17 33 33 H 1.08993 * 117.50098 * 107.48848 * 19 18 17 34 34 H 0.96998 * 126.06026 * 174.63019 * 20 16 15 35 35 H 1.09004 * 108.34199 * 309.05722 * 23 9 7 36 36 H 1.08991 * 108.20594 * 191.89500 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6468 -2.5574 -0.9060 11 6 0.3318 -2.5347 1.2027 12 6 1.0903 -2.5643 2.4977 13 6 2.2569 -3.4850 2.5565 14 1 2.9862 -2.9990 3.2046 15 7 1.9757 -4.7688 3.1965 16 6 2.5770 -5.7026 2.5448 17 6 2.5142 -7.1522 2.9518 18 6 1.1525 -7.7099 3.3711 19 6 2.2344 -7.4611 4.4240 20 7 3.2755 -5.2709 1.4552 21 6 3.0077 -3.8194 1.2873 22 1 3.9413 -3.2582 1.2485 23 6 2.2417 -3.6349 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 -0.3139 -1.6567 1.1822 26 1 -0.2877 -3.4300 1.1498 27 1 0.3990 -2.8381 3.2947 28 1 1.4444 -1.5521 2.6928 29 1 3.1889 -7.8204 2.4167 30 1 0.3020 -7.0284 3.3522 31 1 0.9312 -8.7453 3.1119 32 1 2.7249 -8.3328 4.8574 33 1 2.0958 -6.6159 5.0981 34 1 3.8462 -5.8151 0.8904 35 1 2.9585 -3.4648 -0.8040 36 1 1.7021 -4.5575 -0.2139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = 52.335827 kcal Electronic energy + Delta-G solvation = -16973.581702 eV Core-core repulsion = 14458.397425 eV Total energy + Delta-G solvation = -2515.184276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29235 -37.19360 -35.28980 -32.25114 -31.79347 -28.82649 -28.60540 -24.89992 -23.52062 -22.29985 -21.58128 -21.12286 -18.96973 -17.96360 -16.74554 -15.77345 -15.25252 -14.89959 -14.58766 -14.10440 -13.57232 -13.14100 -12.80549 -12.13818 -11.93305 -11.71222 -11.46222 -11.39094 -11.17043 -10.93266 -10.86231 -10.54190 -10.40048 -10.18339 -9.77778 -9.71354 -9.47580 -9.38729 -8.82687 -8.57518 -8.28111 -7.36133 -5.92171 -4.00748 2.82422 3.32956 3.38308 3.40420 3.74014 4.11753 4.46064 4.71798 4.95187 4.98512 5.08677 5.35274 5.43243 5.63310 5.68357 5.79085 6.02596 6.13104 6.15587 6.27388 6.35425 6.40169 6.48163 6.69243 6.83991 6.88528 6.98284 7.10468 7.30928 7.47230 7.68611 7.77500 7.96972 8.27109 8.33340 8.50011 8.57235 9.02065 9.63598 11.10524 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.049024 B = 0.006600 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.012449 B = 4241.583147 C = 4335.084465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.051 0.949 9 C 0.046 3.954 10 H 0.026 0.974 11 C -0.106 4.106 12 C -0.074 4.074 13 C 0.079 3.921 14 H 0.048 0.952 15 N -0.565 5.565 16 C 0.379 3.621 17 C -0.110 4.110 18 C -0.154 4.154 19 C -0.154 4.154 20 N -0.761 5.761 21 C 0.141 3.859 22 H 0.073 0.927 23 C -0.103 4.103 24 H 0.260 0.740 25 H 0.106 0.894 26 H 0.006 0.994 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.403 0.597 35 H 0.047 0.953 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -12.416 4.693 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.027 3.973 10 H 0.044 0.956 11 C -0.144 4.144 12 C -0.112 4.112 13 C -0.031 4.031 14 H 0.066 0.934 15 N -0.294 5.294 16 C 0.101 3.899 17 C -0.130 4.130 18 C -0.192 4.192 19 C -0.192 4.192 20 N -0.404 5.404 21 C 0.036 3.964 22 H 0.091 0.909 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.124 0.876 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.240 0.760 35 H 0.066 0.934 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.939 -11.922 5.478 13.698 hybrid contribution 1.416 0.867 -1.090 1.986 sum 5.355 -11.055 4.387 13.044 Atomic orbital electron populations 1.69783 1.05831 1.26295 1.51049 1.24936 0.94779 0.98851 0.95372 0.86748 0.79685 0.83598 0.78511 1.20440 1.21343 1.20369 1.21193 0.92566 0.90626 1.50007 0.93058 1.17899 0.92601 0.91854 0.94900 0.95589 1.20679 0.98815 1.00917 0.93967 1.19679 0.95176 0.97160 0.99183 1.20672 0.97885 0.92396 0.92172 0.93421 1.74377 1.27475 0.99002 1.28523 1.21968 0.88803 0.93747 0.85382 1.20555 1.02054 0.90585 0.99849 1.22977 0.92260 1.01470 1.02504 1.22963 1.02161 1.03316 0.90728 1.46543 1.51875 1.10708 1.31288 1.21278 0.98655 0.79381 0.97077 0.90888 1.21020 0.98818 0.99538 0.94836 0.92998 0.87641 0.97557 0.93469 0.92250 0.86857 0.87788 0.88606 0.88739 0.87482 0.76003 0.93427 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 11.03 55.43 0.61 -24.57 16 2 C 0.06 1.67 5.27 -17.82 -0.09 1.57 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.52 7.66 -34.44 -0.26 -13.78 16 8 H 0.05 1.35 7.72 -52.49 -0.41 0.95 16 9 C 0.05 1.16 2.42 -93.70 -0.23 0.93 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.11 -2.62 5.15 -28.95 -0.15 -2.77 16 12 C -0.07 -1.68 5.11 -30.26 -0.15 -1.83 16 13 C 0.08 1.65 3.27 -71.10 -0.23 1.42 16 14 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 15 N -0.57 -10.97 10.86 -54.90 -0.60 -11.56 16 16 C 0.38 6.31 7.40 -155.54 -1.15 5.16 16 17 C -0.11 -1.37 6.33 -91.77 -0.58 -1.96 16 18 C -0.15 -1.77 10.19 -26.73 -0.27 -2.04 16 19 C -0.15 -1.72 10.08 -26.73 -0.27 -1.99 16 20 N -0.76 -12.25 5.98 -52.37 -0.31 -12.56 16 21 C 0.14 2.75 3.79 -68.72 -0.26 2.49 16 22 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 23 C -0.10 -2.19 4.79 -28.89 -0.14 -2.33 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.11 2.88 5.58 -51.93 -0.29 2.59 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 28 H 0.06 1.42 7.94 -51.93 -0.41 1.01 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.39 7.94 -51.93 -0.41 0.98 16 34 H 0.40 5.23 8.96 -40.82 -0.37 4.86 16 35 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 36 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 LS Contribution 285.63 15.07 4.30 4.30 Total: -1.00 -29.01 285.63 -10.45 -39.46 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.64 Total: 3.94 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.79 Total: -15.13 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.30 Total: -48.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.01 -10.45 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.793 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds