Wall clock time and date at job start Mon Mar 30 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00092 * 2 1 4 4 H 1.48505 * 109.47482 * 270.00407 * 3 2 1 5 5 H 1.48496 * 109.47235 * 30.00465 * 3 2 1 6 6 H 1.48504 * 109.47223 * 150.00409 * 3 2 1 7 7 C 1.37885 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99304 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99877 * 179.97438 * 7 2 1 10 10 H 1.08997 * 108.86495 * 61.29294 * 9 7 2 11 11 C 1.52504 * 108.88025 * 302.51849 * 9 7 2 12 12 C 1.54208 * 111.83188 * 292.54302 * 11 9 7 13 13 C 1.51078 * 106.29773 * 302.78459 * 12 11 9 14 14 H 1.09010 * 108.92803 * 308.40303 * 13 12 11 15 15 N 1.44802 * 120.62477 * 180.84235 * 13 12 11 16 16 C 1.30425 * 107.42692 * 217.49442 * 15 13 12 17 17 C 1.50703 * 123.20519 * 184.36344 * 16 15 13 18 18 C 1.52995 * 117.50380 * 43.76150 * 17 16 15 19 19 C 1.53001 * 117.49912 * 335.10096 * 17 16 15 20 20 N 1.38333 * 113.58612 * 4.37369 * 16 15 13 21 21 C 1.45532 * 104.50856 * 20.19765 * 20 16 15 22 22 H 1.08997 * 109.95594 * 83.04052 * 21 20 16 23 23 C 1.51121 * 119.74129 * 211.74760 * 21 20 16 24 24 H 0.96998 * 119.99994 * 359.97438 * 1 2 3 25 25 H 1.09000 * 108.93882 * 171.96542 * 11 9 7 26 26 H 1.08996 * 109.03154 * 53.18897 * 11 9 7 27 27 H 1.09004 * 110.07944 * 183.58387 * 12 11 9 28 28 H 1.09004 * 110.17346 * 62.03141 * 12 11 9 29 29 H 1.09005 * 115.54763 * 189.44030 * 17 16 15 30 30 H 1.09002 * 117.49409 * 0.02562 * 18 17 16 31 31 H 1.09002 * 117.49858 * 145.01683 * 18 17 16 32 32 H 1.09000 * 117.50050 * 214.98590 * 19 17 16 33 33 H 1.09001 * 117.49864 * 359.97438 * 19 17 16 34 34 H 0.97001 * 127.74747 * 200.21201 * 20 16 15 35 35 H 1.09002 * 109.98438 * 295.83706 * 23 21 20 36 36 H 1.09004 * 109.98706 * 57.10020 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8643 -0.6988 0.9035 11 6 4.0045 -0.4181 -1.2179 12 6 3.6703 -1.1454 -2.5359 13 6 4.3023 -2.5141 -2.4369 14 1 5.3511 -2.4003 -2.1624 15 7 4.1925 -3.4581 -3.5294 16 6 4.0478 -4.6446 -3.0074 17 6 3.9954 -5.9069 -3.8290 18 6 5.0108 -6.0539 -4.9639 19 6 3.5384 -5.7843 -5.2840 20 7 3.9468 -4.6338 -1.6278 21 6 3.5549 -3.2707 -1.3016 22 1 2.4761 -3.1581 -1.4085 23 6 4.0116 -2.6501 -0.0015 24 1 -0.4850 0.8400 0.0004 25 1 5.0850 -0.2942 -1.1445 26 1 3.5353 0.5657 -1.2261 27 1 4.0897 -0.5998 -3.3812 28 1 2.5904 -1.2392 -2.6502 29 1 3.7123 -6.8092 -3.2869 30 1 5.7171 -5.2377 -5.1161 31 1 5.3956 -7.0529 -5.1687 32 1 2.9551 -6.6061 -5.6993 33 1 3.2753 -4.7907 -5.6469 34 1 4.1025 -5.3696 -1.0152 35 1 3.5819 -3.1919 0.8411 36 1 5.0998 -2.6702 0.0589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:01 Heat of formation + Delta-G solvation = 65.354082 kcal Electronic energy + Delta-G solvation = -16967.248274 eV Core-core repulsion = 14452.628511 eV Total energy + Delta-G solvation = -2514.619762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43432 -37.36493 -35.53200 -32.20232 -31.67912 -28.90091 -28.71150 -24.79211 -23.47448 -22.35051 -21.36372 -20.84220 -19.31958 -18.61592 -16.88501 -16.24550 -15.37185 -15.04467 -14.69003 -14.24116 -13.65529 -13.07278 -12.70240 -12.64078 -12.16471 -11.88910 -11.61862 -11.43898 -11.29325 -11.13940 -10.97976 -10.58933 -10.47988 -10.11543 -10.02326 -9.89972 -9.61793 -9.15216 -8.89514 -8.82754 -8.49578 -7.50060 -6.07101 -4.05589 2.58787 3.27504 3.37406 3.39965 3.74280 4.03079 4.40467 4.58048 4.91506 4.92849 5.03298 5.23144 5.30955 5.59911 5.64088 5.76224 5.78143 6.06297 6.07898 6.11881 6.16094 6.21752 6.24562 6.34840 6.41423 6.51020 6.71356 6.83727 6.91205 7.07211 7.19299 7.24327 7.38218 7.76910 8.25528 8.41053 8.50327 8.94768 9.55125 11.05826 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.042517 B = 0.006904 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.404387 B = 4054.472569 C = 4068.390058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.012 3.988 10 H 0.032 0.968 11 C -0.115 4.115 12 C -0.083 4.083 13 C 0.052 3.948 14 H 0.061 0.939 15 N -0.555 5.555 16 C 0.385 3.615 17 C -0.110 4.110 18 C -0.157 4.157 19 C -0.151 4.151 20 N -0.761 5.761 21 C 0.106 3.894 22 H 0.092 0.908 23 C -0.088 4.088 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -10.101 -5.959 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.008 4.008 10 H 0.050 0.950 11 C -0.152 4.152 12 C -0.121 4.121 13 C -0.059 4.059 14 H 0.079 0.921 15 N -0.282 5.282 16 C 0.108 3.892 17 C -0.131 4.131 18 C -0.195 4.195 19 C -0.189 4.189 20 N -0.406 5.406 21 C 0.000 4.000 22 H 0.109 0.891 23 C -0.127 4.127 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.151 -9.333 -6.760 14.716 hybrid contribution 0.326 0.490 1.257 1.389 sum 9.477 -8.843 -5.503 14.082 Atomic orbital electron populations 1.69891 1.06258 1.26900 1.50765 1.25016 0.94673 0.98970 0.94509 0.86846 0.79733 0.83724 0.77744 1.20566 1.22796 1.19296 1.21015 0.88589 0.94349 1.50925 0.90803 1.19198 0.97475 0.90544 0.93553 0.95025 1.21988 0.97858 0.99124 0.96267 1.21069 1.01748 0.92661 0.96605 1.22194 0.98543 0.95052 0.90095 0.92113 1.74398 1.26264 0.99032 1.28486 1.22911 0.90160 0.93794 0.82364 1.20603 1.07692 0.94529 0.90276 1.22991 0.93081 1.02931 1.00525 1.22987 0.96931 1.04061 0.94885 1.45646 1.76899 1.13105 1.04993 1.22205 1.00459 0.79744 0.97545 0.89063 1.21296 0.98089 0.97980 0.95312 0.92697 0.94654 0.93178 0.93048 0.90274 0.86541 0.88033 0.88571 0.88516 0.87339 0.75410 0.92208 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.98 5.44 -17.82 -0.10 1.88 16 3 Si 0.89 21.98 24.32 -169.99 -4.13 17.85 16 4 H -0.28 -6.76 6.83 56.52 0.39 -6.38 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.33 6.51 56.52 0.37 -5.96 16 7 C -0.51 -13.84 7.56 -34.44 -0.26 -14.10 16 8 H 0.07 2.17 7.14 -52.49 -0.37 1.80 16 9 C 0.01 0.27 2.13 -91.53 -0.20 0.07 16 10 H 0.03 0.74 7.27 -51.93 -0.38 0.36 16 11 C -0.11 -2.51 4.64 -26.35 -0.12 -2.63 16 12 C -0.08 -1.76 5.86 -27.07 -0.16 -1.92 16 13 C 0.05 1.04 3.14 -68.45 -0.21 0.82 16 14 H 0.06 1.21 7.70 -51.92 -0.40 0.81 16 15 N -0.56 -10.47 11.30 -51.59 -0.58 -11.05 16 16 C 0.38 6.27 7.23 -152.38 -1.10 5.17 16 17 C -0.11 -1.35 6.33 -91.77 -0.58 -1.93 16 18 C -0.16 -1.65 10.20 -26.70 -0.27 -1.92 16 19 C -0.15 -1.69 10.10 -26.69 -0.27 -1.96 16 20 N -0.76 -12.24 6.70 -51.21 -0.34 -12.58 16 21 C 0.11 2.07 3.06 -68.04 -0.21 1.86 16 22 H 0.09 2.12 6.27 -51.93 -0.33 1.79 16 23 C -0.09 -1.73 5.45 -27.18 -0.15 -1.88 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 26 H 0.05 1.17 2.74 -51.93 -0.14 1.03 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 29 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.44 7.95 -51.93 -0.41 1.02 16 34 H 0.41 5.35 8.96 -40.82 -0.37 4.98 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.78 7.91 -51.93 -0.41 0.37 16 LS Contribution 276.62 15.07 4.17 4.17 Total: -1.00 -30.19 276.62 -9.09 -39.28 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.34 Total: 5.36 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.63 Total: -16.53 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.15 Total: -50.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.13 Total: 17.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.19 -9.09 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.632 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds