Wall clock time and date at job start Mon Mar 30 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00092 * 2 1 4 4 H 1.48505 * 109.47482 * 270.00407 * 3 2 1 5 5 H 1.48496 * 109.47235 * 30.00465 * 3 2 1 6 6 H 1.48504 * 109.47223 * 150.00409 * 3 2 1 7 7 C 1.37885 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99304 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99877 * 179.97438 * 7 2 1 10 10 H 1.08997 * 108.86495 * 61.29294 * 9 7 2 11 11 C 1.52504 * 108.88025 * 302.51849 * 9 7 2 12 12 C 1.54208 * 111.83188 * 292.54302 * 11 9 7 13 13 C 1.51078 * 106.29773 * 302.78459 * 12 11 9 14 14 H 1.09010 * 108.92803 * 308.40303 * 13 12 11 15 15 N 1.44802 * 120.62477 * 180.84235 * 13 12 11 16 16 C 1.30425 * 107.42692 * 217.49442 * 15 13 12 17 17 C 1.50703 * 123.20519 * 184.36344 * 16 15 13 18 18 C 1.52995 * 117.50380 * 43.76150 * 17 16 15 19 19 C 1.53001 * 117.49912 * 335.10096 * 17 16 15 20 20 N 1.38333 * 113.58612 * 4.37369 * 16 15 13 21 21 C 1.45532 * 104.50856 * 20.19765 * 20 16 15 22 22 H 1.08997 * 109.95594 * 83.04052 * 21 20 16 23 23 C 1.51121 * 119.74129 * 211.74760 * 21 20 16 24 24 H 0.96998 * 119.99994 * 359.97438 * 1 2 3 25 25 H 1.09000 * 108.93882 * 171.96542 * 11 9 7 26 26 H 1.08996 * 109.03154 * 53.18897 * 11 9 7 27 27 H 1.09004 * 110.07944 * 183.58387 * 12 11 9 28 28 H 1.09004 * 110.17346 * 62.03141 * 12 11 9 29 29 H 1.09005 * 115.54763 * 189.44030 * 17 16 15 30 30 H 1.09002 * 117.49409 * 0.02562 * 18 17 16 31 31 H 1.09002 * 117.49858 * 145.01683 * 18 17 16 32 32 H 1.09000 * 117.50050 * 214.98590 * 19 17 16 33 33 H 1.09001 * 117.49864 * 359.97438 * 19 17 16 34 34 H 0.97001 * 127.74747 * 200.21201 * 20 16 15 35 35 H 1.09002 * 109.98438 * 295.83706 * 23 21 20 36 36 H 1.09004 * 109.98706 * 57.10020 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8643 -0.6988 0.9035 11 6 4.0045 -0.4181 -1.2179 12 6 3.6703 -1.1454 -2.5359 13 6 4.3023 -2.5141 -2.4369 14 1 5.3511 -2.4003 -2.1624 15 7 4.1925 -3.4581 -3.5294 16 6 4.0478 -4.6446 -3.0074 17 6 3.9954 -5.9069 -3.8290 18 6 5.0108 -6.0539 -4.9639 19 6 3.5384 -5.7843 -5.2840 20 7 3.9468 -4.6338 -1.6278 21 6 3.5549 -3.2707 -1.3016 22 1 2.4761 -3.1581 -1.4085 23 6 4.0116 -2.6501 -0.0015 24 1 -0.4850 0.8400 0.0004 25 1 5.0850 -0.2942 -1.1445 26 1 3.5353 0.5657 -1.2261 27 1 4.0897 -0.5998 -3.3812 28 1 2.5904 -1.2392 -2.6502 29 1 3.7123 -6.8092 -3.2869 30 1 5.7171 -5.2377 -5.1161 31 1 5.3956 -7.0529 -5.1687 32 1 2.9551 -6.6061 -5.6993 33 1 3.2753 -4.7907 -5.6469 34 1 4.1025 -5.3696 -1.0152 35 1 3.5819 -3.1919 0.8411 36 1 5.0998 -2.6702 0.0589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:01 Heat of formation + Delta-G solvation = 43.984356 kcal Electronic energy + Delta-G solvation = -16968.174935 eV Core-core repulsion = 14452.628511 eV Total energy + Delta-G solvation = -2515.546423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90929 -38.61319 -36.93969 -34.23657 -33.25945 -30.54849 -30.32968 -26.64590 -24.87294 -23.20875 -22.92814 -22.38747 -21.06862 -20.00190 -18.43700 -17.96900 -16.86006 -16.77215 -16.20052 -15.46374 -15.19754 -14.72144 -14.62188 -14.23374 -13.83013 -13.39825 -13.15950 -12.87575 -12.68109 -12.64973 -12.29051 -12.19404 -11.96264 -11.81354 -11.66233 -11.28531 -11.10086 -10.90985 -10.73652 -10.71330 -10.27804 -8.94680 -8.27114 -6.28667 1.30782 1.32968 1.35029 1.45343 2.32737 2.45241 3.08410 3.09351 3.27445 3.69721 3.96242 3.96688 4.07743 4.14954 4.20127 4.41272 4.48318 4.55535 4.59599 4.65039 4.79002 4.84809 4.86654 4.99975 5.07715 5.13922 5.21286 5.28446 5.36233 5.38032 5.48590 5.60434 5.63898 5.73429 6.30505 6.75570 6.92055 7.17260 7.34960 8.89504 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.042517 B = 0.006904 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.404387 B = 4054.472569 C = 4068.390058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.304 1.304 6 H -0.242 1.242 7 C -0.502 4.502 8 H 0.033 0.967 9 C 0.008 3.992 10 H 0.036 0.964 11 C -0.115 4.115 12 C -0.079 4.079 13 C 0.056 3.944 14 H 0.069 0.931 15 N -0.589 5.589 16 C 0.388 3.612 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.153 4.153 20 N -0.749 5.749 21 C 0.114 3.886 22 H 0.043 0.957 23 C -0.080 4.080 24 H 0.263 0.737 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.424 0.576 35 H 0.059 0.941 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -11.299 -6.367 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.166 1.166 7 C -0.540 4.540 8 H 0.051 0.949 9 C -0.011 4.011 10 H 0.054 0.946 11 C -0.152 4.152 12 C -0.118 4.118 13 C -0.055 4.055 14 H 0.087 0.913 15 N -0.316 5.316 16 C 0.112 3.888 17 C -0.146 4.146 18 C -0.175 4.175 19 C -0.191 4.191 20 N -0.396 5.396 21 C 0.007 3.993 22 H 0.061 0.939 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.162 0.838 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.965 -10.571 -7.156 17.497 hybrid contribution -0.604 0.733 1.355 1.655 sum 11.361 -9.839 -5.801 16.110 Atomic orbital electron populations 1.70047 1.08208 1.27731 1.53293 1.25846 0.95342 1.02833 0.94612 0.85875 0.79323 0.79084 0.78195 1.19918 1.23256 1.16578 1.21258 0.91126 0.92596 1.49006 0.94868 1.19231 0.94357 0.93175 0.94354 0.94558 1.21944 0.99742 0.97981 0.95559 1.20969 0.99409 0.94315 0.97069 1.22077 0.98437 0.94448 0.90551 0.91320 1.74405 1.29095 0.99825 1.28319 1.23617 0.87884 0.94713 0.82565 1.20857 1.09742 0.93424 0.90537 1.23056 0.92120 1.04196 0.98088 1.23035 0.98332 1.03745 0.93952 1.45495 1.76363 1.12254 1.05468 1.21808 0.97751 0.81887 0.97871 0.93894 1.21182 0.99734 0.95747 0.95179 0.92833 0.91245 0.94548 0.91771 0.94219 0.83802 0.89590 0.85143 0.85740 0.90016 0.73466 0.92247 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.58 5.44 84.66 0.46 1.04 16 3 Si 0.95 45.46 24.32 68.60 1.67 47.12 16 4 H -0.27 -12.71 6.83 99.48 0.68 -12.03 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.24 -10.53 6.51 99.48 0.65 -9.88 16 7 C -0.50 -28.03 7.56 25.60 0.19 -27.84 16 8 H 0.03 2.07 7.14 -2.91 -0.02 2.05 16 9 C 0.01 0.37 2.13 -11.38 -0.02 0.35 16 10 H 0.04 1.62 7.27 -2.39 -0.02 1.60 16 11 C -0.11 -4.81 4.64 30.84 0.14 -4.67 16 12 C -0.08 -3.36 5.86 30.38 0.18 -3.18 16 13 C 0.06 2.18 3.14 45.56 0.14 2.32 16 14 H 0.07 2.55 7.70 -2.38 -0.02 2.53 16 15 N -0.59 -21.82 11.30 -317.12 -3.58 -25.41 16 16 C 0.39 12.10 7.23 137.07 0.99 13.09 16 17 C -0.13 -2.72 6.33 -11.54 -0.07 -2.80 16 18 C -0.14 -2.42 10.20 30.62 0.31 -2.11 16 19 C -0.15 -3.09 10.10 30.62 0.31 -2.78 16 20 N -0.75 -22.97 6.70 -315.94 -2.12 -25.08 16 21 C 0.11 4.42 3.06 45.44 0.14 4.56 16 22 H 0.04 2.10 6.27 -2.39 -0.01 2.09 16 23 C -0.08 -3.03 5.45 30.30 0.17 -2.86 16 24 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 26 H 0.04 1.63 2.74 -2.39 -0.01 1.63 16 27 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.04 1.96 7.54 -2.38 -0.02 1.94 16 29 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.12 7.95 -2.39 -0.02 2.10 16 34 H 0.42 10.14 8.96 -92.71 -0.83 9.31 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.40 7.91 -2.39 -0.02 2.38 16 Total: -1.00 -68.29 276.62 -0.63 -68.92 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.16 Total: 19.19 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 2.94 Total: -24.88 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.40 Total: -110.36 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.12 kcal Total: -68.29 -0.63 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.907 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds