Wall clock time and date at job start Mon Mar 30 2020 03:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48499 * 109.46839 * 239.99775 * 3 2 1 5 5 H 1.48495 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47342 * 119.99920 * 3 2 1 7 7 C 1.37881 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99750 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.75086 * 60.70375 * 9 7 2 11 11 C 1.53462 * 109.75586 * 300.00007 * 9 7 2 12 12 C 1.52525 * 107.57458 * 171.74649 * 11 9 7 13 13 C 1.49402 * 113.32229 * 54.65872 * 12 11 9 14 14 H 1.09001 * 106.36523 * 209.69245 * 13 12 11 15 15 C 1.51195 * 119.62407 * 328.60402 * 13 12 11 16 16 H 1.09005 * 109.77869 * 255.13536 * 15 13 12 17 17 C 1.51557 * 116.22503 * 20.50871 * 15 13 12 18 18 N 1.48202 * 103.09887 * 138.20387 * 15 13 12 19 19 C 1.28414 * 109.82349 * 353.63027 * 18 15 13 20 20 N 1.36732 * 114.41970 * 1.02552 * 19 18 15 21 21 C 1.46499 * 126.42066 * 185.06484 * 20 19 18 22 22 C 1.53000 * 117.49923 * 8.72652 * 21 20 19 23 23 C 1.52996 * 117.50412 * 300.06544 * 21 20 19 24 24 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.83883 * 52.22935 * 11 9 7 26 26 H 1.08994 * 109.88575 * 291.29147 * 11 9 7 27 27 H 1.09003 * 108.71562 * 293.66527 * 12 11 9 28 28 H 1.08996 * 108.71275 * 175.64937 * 12 11 9 29 29 H 1.09004 * 108.80712 * 205.09624 * 17 15 13 30 30 H 1.09000 * 108.71543 * 86.78677 * 17 15 13 31 31 H 1.07997 * 122.78553 * 180.98537 * 19 18 15 32 32 H 1.09010 * 115.55284 * 154.39406 * 21 20 19 33 33 H 1.08996 * 117.49814 * 359.97438 * 22 21 20 34 34 H 1.09009 * 117.49755 * 145.01871 * 22 21 20 35 35 H 1.08999 * 117.50001 * 214.98149 * 23 21 20 36 36 H 1.09002 * 117.49651 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6325 -2.5674 -0.8944 11 6 0.3658 -2.5870 1.2510 12 6 -0.5227 -3.8176 1.1007 13 6 0.2448 -5.0739 0.8465 14 1 -0.4057 -5.7165 0.2532 15 6 1.5484 -5.0118 0.0831 16 1 1.4008 -5.3859 -0.9300 17 6 2.2341 -3.6609 0.0375 18 7 2.4240 -5.9394 0.8377 19 6 1.8241 -6.3360 1.9015 20 7 0.5602 -5.8382 2.0567 21 6 -0.3150 -6.0325 3.2154 22 6 0.2904 -6.6946 4.4548 23 6 -0.6979 -7.4686 3.5788 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2517 -1.6924 1.3307 26 1 0.9886 -2.6869 2.1399 27 1 -1.2099 -3.6536 0.2706 28 1 -1.1049 -3.9422 2.0137 29 1 2.8640 -3.6164 -0.8510 30 1 2.8652 -3.5591 0.9203 31 1 2.2799 -7.0075 2.6141 32 1 -1.0638 -5.2565 3.3745 33 1 1.3396 -6.9861 4.4079 34 1 -0.0604 -6.3544 5.4292 35 1 -1.6984 -7.6372 3.9771 36 1 -0.2983 -8.2689 2.9559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:13 Heat of formation + Delta-G solvation = 60.913121 kcal Electronic energy + Delta-G solvation = -16942.051723 eV Core-core repulsion = 14427.239386 eV Total energy + Delta-G solvation = -2514.812337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46608 -37.09013 -35.29057 -32.44260 -31.70792 -28.85191 -28.46710 -24.80927 -22.93610 -22.50262 -21.97864 -20.81281 -19.35617 -17.96304 -16.80960 -16.23117 -15.38951 -15.20499 -14.53118 -13.76052 -13.43922 -13.20735 -12.90349 -12.58065 -12.17099 -11.76683 -11.68215 -11.51782 -11.33506 -10.87868 -10.74195 -10.57320 -10.48871 -10.26665 -10.12641 -9.79795 -9.56281 -9.38083 -9.00765 -8.57364 -8.28057 -7.34659 -5.95169 -4.00898 2.90993 3.25506 3.34637 3.38593 3.42277 3.84531 4.46605 4.68841 4.79746 4.86627 4.90155 5.20712 5.33010 5.40737 5.51586 5.64745 5.73764 5.80621 5.97865 6.03084 6.12766 6.18455 6.40631 6.54515 6.68432 6.77857 6.90280 7.02046 7.22678 7.26576 7.49846 7.78014 7.90255 8.04074 8.15314 8.34910 8.51372 9.02408 9.63257 11.10305 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.006711 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.534707 B = 4171.307995 C = 4447.759314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.105 4.105 12 C -0.114 4.114 13 C 0.135 3.865 14 H 0.037 0.963 15 C 0.062 3.938 16 H 0.082 0.918 17 C -0.091 4.091 18 N -0.567 5.567 19 C 0.330 3.670 20 N -0.614 5.614 21 C 0.112 3.888 22 C -0.188 4.188 23 C -0.200 4.200 24 H 0.259 0.741 25 H 0.096 0.904 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.172 0.828 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -12.068 6.853 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.044 0.956 11 C -0.143 4.143 12 C -0.153 4.153 13 C 0.030 3.970 14 H 0.055 0.945 15 C -0.048 4.048 16 H 0.099 0.901 17 C -0.129 4.129 18 N -0.292 5.292 19 C 0.031 3.969 20 N -0.335 5.335 21 C 0.006 3.994 22 C -0.227 4.227 23 C -0.240 4.240 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.189 0.811 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.207 -11.984 6.308 13.722 hybrid contribution -0.351 0.965 0.384 1.096 sum -2.558 -11.019 6.692 13.143 Atomic orbital electron populations 1.69862 1.05823 1.26371 1.51060 1.24944 0.94845 0.98929 0.95237 0.86692 0.79632 0.83266 0.78615 1.20298 1.21352 1.20374 1.21156 0.92875 0.90572 1.50062 0.92838 1.18582 0.92769 0.91295 0.94134 0.95558 1.21576 0.98242 0.95864 0.98636 1.20959 0.98602 0.94883 1.00811 1.20589 0.97458 0.94117 0.84789 0.94509 1.22051 0.89645 0.95935 0.97159 0.90050 1.21193 0.98982 0.91728 1.00989 1.74791 1.29011 1.16945 1.08431 1.24504 0.83402 0.93665 0.95301 1.47774 1.14478 1.53379 1.17857 1.21217 0.96493 0.95362 0.86300 1.23322 0.99395 1.04477 0.95463 1.23515 1.00150 0.96502 1.03820 0.93068 0.88619 0.95148 0.91634 0.93412 0.93215 0.93159 0.81112 0.85506 0.88541 0.87988 0.88378 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 2 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.18 8.58 -34.44 -0.30 -14.48 16 8 H 0.05 1.50 7.75 -52.49 -0.41 1.09 16 9 C 0.05 1.28 2.12 -91.92 -0.19 1.09 16 10 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 11 C -0.11 -2.47 5.21 -26.73 -0.14 -2.61 16 12 C -0.11 -2.19 5.49 -28.75 -0.16 -2.35 16 13 C 0.13 2.43 3.14 -70.58 -0.22 2.20 16 14 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 15 C 0.06 1.22 3.93 -68.63 -0.27 0.95 16 16 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 17 C -0.09 -2.05 4.69 -27.85 -0.13 -2.18 16 18 N -0.57 -10.69 11.06 -56.53 -0.63 -11.31 16 19 C 0.33 5.18 11.59 -90.51 -1.05 4.13 16 20 N -0.61 -9.50 3.30 -164.23 -0.54 -10.05 16 21 C 0.11 1.38 6.55 -67.93 -0.44 0.94 16 22 C -0.19 -1.83 9.99 -26.69 -0.27 -2.09 16 23 C -0.20 -1.94 10.41 -26.70 -0.28 -2.22 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.10 2.51 5.97 -51.93 -0.31 2.20 16 26 H 0.03 0.73 8.11 -51.93 -0.42 0.30 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.82 6.13 -51.93 -0.32 0.51 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.17 2.05 6.93 -52.49 -0.36 1.69 16 32 H 0.13 1.55 6.65 -51.92 -0.35 1.20 16 33 H 0.10 0.90 6.80 -51.93 -0.35 0.55 16 34 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 283.13 15.07 4.27 4.27 Total: -1.00 -29.44 283.13 -10.28 -39.72 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.44 Total: 0.61 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -3.54 Total: -15.02 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.54 Total: -46.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.44 -10.28 -39.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.635 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds